Wall clock time and date at job start Tue Mar 31 2020 19:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 N 1.46500 * 109.46989 * 119.99977 * 2 1 3 5 5 C 1.36936 * 120.00220 * 294.90222 * 4 2 1 6 6 H 1.08003 * 120.00199 * 37.14550 * 5 4 2 7 7 C 1.38812 * 120.00283 * 217.14985 * 5 4 2 8 8 N 1.31618 * 119.99897 * 21.25978 * 7 5 4 9 9 Si 1.86800 * 120.00096 * 201.26706 * 7 5 4 10 10 H 1.48503 * 109.46900 * 89.99612 * 9 7 5 11 11 H 1.48497 * 109.47212 * 209.99376 * 9 7 5 12 12 H 1.48495 * 109.46983 * 329.99709 * 9 7 5 13 13 C 1.46497 * 120.00115 * 114.90245 * 4 2 1 14 14 C 1.52993 * 109.47504 * 270.00204 * 13 4 2 15 15 C 1.52995 * 109.47609 * 179.97438 * 14 13 4 16 16 N 1.46505 * 109.47506 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00408 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99557 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00323 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47019 * 180.02562 * 19 17 16 21 21 N 1.46505 * 109.46716 * 180.02562 * 20 19 17 22 22 C 1.35760 * 119.62765 * 90.00163 * 21 20 19 23 23 C 1.35346 * 120.70599 * 180.27079 * 22 21 20 24 24 C 1.40198 * 119.94356 * 359.44218 * 23 22 21 25 25 C 1.36392 * 119.26873 * 0.57167 * 24 23 22 26 26 C 1.34657 * 119.62298 * 270.02327 * 21 20 19 27 27 O 1.22058 * 119.98981 * 0.02562 * 26 21 20 28 28 H 1.09004 * 109.47216 * 303.30646 * 1 2 3 29 29 H 1.08996 * 109.47232 * 63.30735 * 1 2 3 30 30 H 1.09001 * 109.47543 * 183.31157 * 1 2 3 31 31 H 1.08995 * 109.47204 * 240.00041 * 2 1 3 32 32 H 1.08998 * 109.47411 * 181.61699 * 3 2 1 33 33 H 1.08998 * 109.47206 * 301.62350 * 3 2 1 34 34 H 1.09007 * 109.46836 * 61.62082 * 3 2 1 35 35 H 0.97000 * 120.00274 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47784 * 149.99380 * 13 4 2 37 37 H 1.09006 * 109.46910 * 30.00022 * 13 4 2 38 38 H 1.09004 * 109.47519 * 59.99108 * 14 13 4 39 39 H 1.09006 * 109.46888 * 299.99831 * 14 13 4 40 40 H 1.08994 * 109.47280 * 59.99912 * 15 14 13 41 41 H 1.08998 * 109.47264 * 299.99796 * 15 14 13 42 42 H 0.97007 * 119.99763 * 359.97438 * 16 15 14 43 43 H 1.09002 * 109.46908 * 60.00441 * 19 17 16 44 44 H 1.08998 * 109.47039 * 300.00595 * 19 17 16 45 45 H 1.08994 * 109.47274 * 60.00535 * 20 19 17 46 46 H 1.08994 * 109.47245 * 299.99960 * 20 19 17 47 47 H 1.08000 * 119.64519 * 0.02562 * 22 21 20 48 48 H 1.08001 * 120.02798 * 179.69735 * 23 22 21 49 49 H 1.08005 * 120.36564 * 180.31177 * 24 23 22 50 50 H 1.07996 * 120.35323 * 179.74184 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7757 -0.1651 2.4372 6 1 0.8339 0.3219 2.6428 7 6 2.7404 -0.2581 3.4310 8 7 4.0013 -0.4530 3.1080 9 14 2.2488 -0.1070 5.2269 10 1 1.9207 -1.4516 5.7651 11 1 3.3747 0.4748 6.0009 12 1 1.0604 0.7759 5.3421 13 6 2.7661 -1.9435 1.0647 14 6 1.7930 -3.1237 1.0929 15 6 2.5739 -4.4321 0.9549 16 7 1.6421 -5.5623 0.9825 17 6 2.1078 -6.8224 0.8753 18 8 3.2983 -7.0208 0.7564 19 6 1.1493 -7.9850 0.9042 20 6 1.9304 -9.2934 0.7661 21 7 0.9985 -10.4235 0.7937 22 6 0.4644 -10.8814 -0.3674 23 6 -0.4029 -11.9205 -0.3668 24 6 -0.7487 -12.5426 0.8411 25 6 -0.2115 -12.0810 2.0067 26 6 0.6811 -10.9960 1.9704 27 8 1.1688 -10.5725 3.0061 28 1 -0.3634 0.5643 0.8589 29 1 -0.3633 0.4616 -0.9181 30 1 -0.3634 -1.0259 0.0594 31 1 1.8933 -0.5138 -0.8899 32 1 3.1296 1.4427 -0.0290 33 1 1.6531 1.9647 -0.8750 34 1 1.7005 1.9478 0.9042 35 1 4.6754 -0.5184 3.8025 36 1 3.4713 -2.0342 1.8908 37 1 3.3108 -1.9441 0.1205 38 1 1.0878 -3.0330 0.2667 39 1 1.2483 -3.1231 2.0371 40 1 3.2793 -4.5231 1.7809 41 1 3.1182 -4.4325 0.0106 42 1 0.6899 -5.4036 1.0779 43 1 0.4431 -7.8942 0.0789 44 1 0.6060 -7.9845 1.8491 45 1 2.6363 -9.3840 1.5916 46 1 2.4739 -9.2941 -0.1786 47 1 0.7313 -10.4089 -1.3012 48 1 -0.8250 -12.2727 -1.2964 49 1 -1.4363 -13.3755 0.8490 50 1 -0.4690 -12.5445 2.9475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481351301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:33 Heat of formation + Delta-G solvation = -30.392055 kcal Electronic energy + Delta-G solvation = -28278.125862 eV Core-core repulsion = 24306.187324 eV Total energy + Delta-G solvation = -3971.938538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.67784 -39.62563 -37.18976 -36.82505 -35.50852 -34.94693 -32.55008 -31.91086 -31.07893 -30.13781 -28.78155 -26.22371 -26.05261 -24.89200 -24.03507 -23.13720 -22.29662 -20.93592 -20.14494 -19.51834 -18.07194 -17.64838 -16.98175 -16.50801 -16.37251 -16.01079 -15.84100 -15.34392 -15.03866 -14.86533 -14.53916 -14.39222 -14.12607 -13.69053 -13.42242 -13.11273 -12.98602 -12.84075 -12.69309 -12.42196 -12.33506 -12.09931 -11.74975 -11.53769 -11.50206 -11.41850 -11.31483 -10.97325 -10.77387 -10.65729 -10.55422 -10.43364 -10.22799 -10.20652 -9.97308 -9.81911 -9.59214 -9.50082 -8.90681 -8.46851 -8.33278 -6.55727 -5.77061 -3.35160 0.46356 1.52800 2.23512 2.61830 3.22757 3.36128 3.39935 3.44834 3.45316 4.17811 4.28505 4.43128 4.47941 4.52788 4.69728 4.78976 4.86709 4.94465 5.08492 5.22212 5.36570 5.38994 5.52704 5.61195 5.64272 5.72292 5.78007 5.90138 5.93128 6.01664 6.15127 6.16288 6.29703 6.38278 6.39322 6.43175 6.65630 6.71424 6.72584 6.74769 6.78003 6.79023 7.10719 7.20497 7.33403 7.55928 7.68832 7.74101 7.84946 8.22914 8.54065 9.21068 9.83865 10.42182 11.22700 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002039 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.387743 B =13730.889935 C =14552.584121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.145 4.145 4 N -0.579 5.579 5 C -0.252 4.252 6 H 0.060 0.940 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.287 1.287 11 H -0.292 1.292 12 H -0.278 1.278 13 C 0.150 3.850 14 C -0.145 4.145 15 C 0.120 3.880 16 N -0.723 5.723 17 C 0.515 3.485 18 O -0.544 6.544 19 C -0.156 4.156 20 C 0.106 3.894 21 N -0.496 5.496 22 C 0.136 3.864 23 C -0.237 4.237 24 C -0.018 4.018 25 C -0.244 4.244 26 C 0.509 3.491 27 O -0.546 6.546 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.029 0.971 34 H 0.057 0.943 35 H 0.254 0.746 36 H 0.097 0.903 37 H 0.024 0.976 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.400 0.600 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.101 0.899 47 H 0.162 0.838 48 H 0.145 0.855 49 H 0.133 0.867 50 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -20.741 -11.143 25.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.077 0.923 7 C -0.189 4.189 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.214 1.214 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.023 3.977 14 C -0.186 4.186 15 C -0.003 4.003 16 N -0.373 5.373 17 C 0.300 3.700 18 O -0.422 6.422 19 C -0.197 4.197 20 C -0.016 4.016 21 N -0.206 5.206 22 C 0.008 3.992 23 C -0.260 4.260 24 C -0.040 4.040 25 C -0.266 4.266 26 C 0.311 3.689 27 O -0.428 6.428 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.115 0.885 37 H 0.042 0.958 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.129 0.871 46 H 0.119 0.881 47 H 0.180 0.820 48 H 0.162 0.838 49 H 0.151 0.849 50 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.041 -20.524 -10.441 24.739 hybrid contribution -0.874 0.095 0.964 1.305 sum -9.915 -20.430 -9.477 24.607 Atomic orbital electron populations 1.22206 0.98948 1.00444 0.99717 1.20410 0.91928 0.92331 0.89831 1.22037 1.00834 0.97842 0.99715 1.43855 1.64337 1.20482 1.01226 1.18903 0.97463 1.34585 0.87236 0.92266 1.25161 0.94537 1.00494 0.98680 1.69976 0.99393 1.51575 1.31921 0.86451 0.77677 0.77891 0.85711 1.21373 1.21804 1.20379 1.20818 0.93090 0.82891 1.00911 1.22500 1.00402 0.94170 1.01500 1.21508 0.92307 0.84612 1.01905 1.46178 1.11440 1.06027 1.73674 1.20214 0.89099 0.84087 0.76610 1.90727 1.16570 1.85250 1.49650 1.21948 0.99226 0.93107 1.05434 1.21737 0.91053 0.82361 1.06429 1.45653 1.38554 1.28961 1.07473 1.22035 0.92554 0.94528 0.90079 1.20665 1.05032 1.00688 0.99639 1.21450 0.94259 0.96314 0.91931 1.22162 1.03472 1.00570 1.00423 1.17241 0.83989 0.84990 0.82684 1.91006 1.55507 1.65435 1.30880 0.92964 0.94647 0.93820 0.93762 0.93330 0.95220 0.92356 0.93577 0.88523 0.95759 0.93294 0.91664 0.91403 0.91918 0.76660 0.88507 0.88014 0.87108 0.88065 0.82034 0.83774 0.84861 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.19 37.16 0.34 -2.39 16 2 C 0.16 3.26 3.37 -67.93 -0.23 3.04 16 3 C -0.15 -2.90 9.11 37.16 0.34 -2.56 16 4 N -0.58 -13.49 2.37 -165.67 -0.39 -13.88 16 5 C -0.25 -6.52 8.04 -15.06 -0.12 -6.64 16 6 H 0.06 1.56 7.14 -52.48 -0.37 1.18 16 7 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 8 N -0.89 -24.91 11.43 55.49 0.63 -24.28 16 9 Si 0.89 21.35 29.60 -169.99 -5.03 16.32 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.15 3.30 5.28 -4.05 -0.02 3.28 16 14 C -0.15 -2.59 5.65 -26.74 -0.15 -2.74 16 15 C 0.12 1.95 5.67 -4.04 -0.02 1.92 16 16 N -0.72 -9.55 5.56 -60.30 -0.33 -9.89 16 17 C 0.52 6.89 7.83 -10.99 -0.09 6.81 16 18 O -0.54 -9.34 15.98 5.55 0.09 -9.25 16 19 C -0.16 -1.48 6.02 -27.88 -0.17 -1.65 16 20 C 0.11 1.03 4.62 -4.04 -0.02 1.01 16 21 N -0.50 -4.41 2.58 -119.77 -0.31 -4.72 16 22 C 0.14 0.73 10.28 -16.84 -0.17 0.56 16 23 C -0.24 -1.11 10.01 -39.88 -0.40 -1.51 16 24 C -0.02 -0.10 10.09 -39.51 -0.40 -0.50 16 25 C -0.24 -2.16 9.99 -39.38 -0.39 -2.55 16 26 C 0.51 6.00 7.41 -15.44 -0.11 5.88 16 27 O -0.55 -8.85 16.64 4.87 0.08 -8.77 16 28 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.85 7.77 -51.93 -0.40 0.44 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 1.25 7.50 -51.92 -0.39 0.86 16 35 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.10 2.46 5.48 -51.93 -0.28 2.18 16 37 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.40 4.28 8.47 -40.82 -0.35 3.94 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.11 1.40 7.35 -51.93 -0.38 1.02 16 46 H 0.10 0.80 7.97 -51.93 -0.41 0.39 16 47 H 0.16 0.36 8.04 -52.49 -0.42 -0.07 16 48 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 49 H 0.13 0.40 8.06 -52.48 -0.42 -0.02 16 50 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 411.84 15.07 6.21 6.21 Total: -1.00 -33.71 411.84 -9.20 -42.91 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -8.44 Total: 3.17 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.70 Total: 2.17 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.40 Total: -52.76 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.71 -9.20 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481351301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.517 kcal (2) G-P(sol) polarization free energy of solvation -33.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds