Wall clock time and date at job start Tue Mar 31 2020 19:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47153 * 2 1 4 4 N 1.46500 * 109.46989 * 119.99977 * 2 1 3 5 5 C 1.36936 * 120.00220 * 294.90222 * 4 2 1 6 6 H 1.08003 * 120.00199 * 37.14550 * 5 4 2 7 7 C 1.38812 * 120.00283 * 217.14985 * 5 4 2 8 8 N 1.31618 * 119.99897 * 21.25978 * 7 5 4 9 9 Si 1.86800 * 120.00096 * 201.26706 * 7 5 4 10 10 H 1.48503 * 109.46900 * 89.99612 * 9 7 5 11 11 H 1.48497 * 109.47212 * 209.99376 * 9 7 5 12 12 H 1.48495 * 109.46983 * 329.99709 * 9 7 5 13 13 C 1.46497 * 120.00115 * 114.90245 * 4 2 1 14 14 C 1.52993 * 109.47504 * 270.00204 * 13 4 2 15 15 C 1.52995 * 109.47609 * 179.97438 * 14 13 4 16 16 N 1.46505 * 109.47506 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00408 * 179.97438 * 16 15 14 18 18 O 1.21283 * 119.99557 * 0.02562 * 17 16 15 19 19 C 1.50696 * 120.00323 * 179.97438 * 17 16 15 20 20 C 1.53002 * 109.47019 * 180.02562 * 19 17 16 21 21 N 1.46505 * 109.46716 * 180.02562 * 20 19 17 22 22 C 1.35760 * 119.62765 * 90.00163 * 21 20 19 23 23 C 1.35346 * 120.70599 * 180.27079 * 22 21 20 24 24 C 1.40198 * 119.94356 * 359.44218 * 23 22 21 25 25 C 1.36392 * 119.26873 * 0.57167 * 24 23 22 26 26 C 1.34657 * 119.62298 * 270.02327 * 21 20 19 27 27 O 1.22058 * 119.98981 * 0.02562 * 26 21 20 28 28 H 1.09004 * 109.47216 * 303.30646 * 1 2 3 29 29 H 1.08996 * 109.47232 * 63.30735 * 1 2 3 30 30 H 1.09001 * 109.47543 * 183.31157 * 1 2 3 31 31 H 1.08995 * 109.47204 * 240.00041 * 2 1 3 32 32 H 1.08998 * 109.47411 * 181.61699 * 3 2 1 33 33 H 1.08998 * 109.47206 * 301.62350 * 3 2 1 34 34 H 1.09007 * 109.46836 * 61.62082 * 3 2 1 35 35 H 0.97000 * 120.00274 * 180.02562 * 8 7 5 36 36 H 1.08996 * 109.47784 * 149.99380 * 13 4 2 37 37 H 1.09006 * 109.46910 * 30.00022 * 13 4 2 38 38 H 1.09004 * 109.47519 * 59.99108 * 14 13 4 39 39 H 1.09006 * 109.46888 * 299.99831 * 14 13 4 40 40 H 1.08994 * 109.47280 * 59.99912 * 15 14 13 41 41 H 1.08998 * 109.47264 * 299.99796 * 15 14 13 42 42 H 0.97007 * 119.99763 * 359.97438 * 16 15 14 43 43 H 1.09002 * 109.46908 * 60.00441 * 19 17 16 44 44 H 1.08998 * 109.47039 * 300.00595 * 19 17 16 45 45 H 1.08994 * 109.47274 * 60.00535 * 20 19 17 46 46 H 1.08994 * 109.47245 * 299.99960 * 20 19 17 47 47 H 1.08000 * 119.64519 * 0.02562 * 22 21 20 48 48 H 1.08001 * 120.02798 * 179.69735 * 23 22 21 49 49 H 1.08005 * 120.36564 * 180.31177 * 24 23 22 50 50 H 1.07996 * 120.35323 * 179.74184 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7757 -0.1651 2.4372 6 1 0.8339 0.3219 2.6428 7 6 2.7404 -0.2581 3.4310 8 7 4.0013 -0.4530 3.1080 9 14 2.2488 -0.1070 5.2269 10 1 1.9207 -1.4516 5.7651 11 1 3.3747 0.4748 6.0009 12 1 1.0604 0.7759 5.3421 13 6 2.7661 -1.9435 1.0647 14 6 1.7930 -3.1237 1.0929 15 6 2.5739 -4.4321 0.9549 16 7 1.6421 -5.5623 0.9825 17 6 2.1078 -6.8224 0.8753 18 8 3.2983 -7.0208 0.7564 19 6 1.1493 -7.9850 0.9042 20 6 1.9304 -9.2934 0.7661 21 7 0.9985 -10.4235 0.7937 22 6 0.4644 -10.8814 -0.3674 23 6 -0.4029 -11.9205 -0.3668 24 6 -0.7487 -12.5426 0.8411 25 6 -0.2115 -12.0810 2.0067 26 6 0.6811 -10.9960 1.9704 27 8 1.1688 -10.5725 3.0061 28 1 -0.3634 0.5643 0.8589 29 1 -0.3633 0.4616 -0.9181 30 1 -0.3634 -1.0259 0.0594 31 1 1.8933 -0.5138 -0.8899 32 1 3.1296 1.4427 -0.0290 33 1 1.6531 1.9647 -0.8750 34 1 1.7005 1.9478 0.9042 35 1 4.6754 -0.5184 3.8025 36 1 3.4713 -2.0342 1.8908 37 1 3.3108 -1.9441 0.1205 38 1 1.0878 -3.0330 0.2667 39 1 1.2483 -3.1231 2.0371 40 1 3.2793 -4.5231 1.7809 41 1 3.1182 -4.4325 0.0106 42 1 0.6899 -5.4036 1.0779 43 1 0.4431 -7.8942 0.0789 44 1 0.6060 -7.9845 1.8491 45 1 2.6363 -9.3840 1.5916 46 1 2.4739 -9.2941 -0.1786 47 1 0.7313 -10.4089 -1.3012 48 1 -0.8250 -12.2727 -1.2964 49 1 -1.4363 -13.3755 0.8490 50 1 -0.4690 -12.5445 2.9475 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481351301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:32 Heat of formation + Delta-G solvation = -51.847307 kcal Electronic energy + Delta-G solvation = -28279.056232 eV Core-core repulsion = 24306.187324 eV Total energy + Delta-G solvation = -3972.868907 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.36613 -40.75876 -38.52524 -37.98244 -36.50808 -35.95238 -34.29309 -33.32651 -32.13616 -30.76566 -30.38393 -27.72561 -27.41252 -26.17685 -24.80828 -24.42657 -23.10624 -22.38980 -21.37570 -21.22620 -18.82726 -18.28984 -18.20474 -17.80582 -17.15389 -17.11833 -16.99161 -16.76316 -16.41306 -15.96336 -15.77363 -15.45593 -15.26214 -15.05654 -14.58478 -14.50331 -14.27489 -14.04104 -13.82386 -13.32450 -13.25846 -13.23003 -13.13937 -12.86314 -12.82609 -12.73326 -12.68932 -12.52687 -12.35666 -12.28587 -12.13770 -11.90499 -11.70286 -11.32095 -11.28102 -11.20137 -11.02004 -10.91458 -10.47400 -10.13823 -8.96371 -8.49522 -7.76866 -5.38140 -0.05690 0.94026 1.43168 1.47382 1.51100 1.53153 1.55363 2.23770 2.52183 2.70941 3.29036 3.55875 3.62260 3.65073 3.76698 3.93015 4.00701 4.17305 4.20305 4.29201 4.31588 4.37035 4.39043 4.49809 4.53272 4.64716 4.68352 4.74260 4.76336 4.81987 4.97377 4.99248 5.09954 5.10683 5.16757 5.21889 5.22460 5.24171 5.41806 5.42950 5.50112 5.64287 5.69280 5.69341 5.75727 5.90868 6.11801 6.49047 6.53213 6.99449 7.16792 7.23778 7.95324 8.46280 9.17895 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015705 B = 0.002039 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.387743 B =13730.889935 C =14552.584121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 C -0.138 4.138 4 N -0.593 5.593 5 C -0.241 4.241 6 H 0.056 0.944 7 C -0.039 4.039 8 N -0.918 5.918 9 Si 0.944 3.056 10 H -0.291 1.291 11 H -0.300 1.300 12 H -0.268 1.268 13 C 0.148 3.852 14 C -0.121 4.121 15 C 0.133 3.867 16 N -0.714 5.714 17 C 0.514 3.486 18 O -0.585 6.585 19 C -0.140 4.140 20 C 0.108 3.892 21 N -0.492 5.492 22 C 0.130 3.870 23 C -0.228 4.228 24 C 0.008 3.992 25 C -0.284 4.284 26 C 0.490 3.510 27 O -0.616 6.616 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.247 0.753 36 H 0.059 0.941 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.415 0.585 43 H 0.141 0.859 44 H 0.094 0.906 45 H 0.070 0.930 46 H 0.124 0.876 47 H 0.203 0.797 48 H 0.184 0.816 49 H 0.167 0.833 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.643 -22.075 -14.712 29.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.197 4.197 4 N -0.314 5.314 5 C -0.372 4.372 6 H 0.074 0.926 7 C -0.236 4.236 8 N -0.562 5.562 9 Si 0.774 3.226 10 H -0.218 1.218 11 H -0.227 1.227 12 H -0.193 1.193 13 C 0.021 3.979 14 C -0.161 4.161 15 C 0.008 3.992 16 N -0.366 5.366 17 C 0.301 3.699 18 O -0.466 6.466 19 C -0.180 4.180 20 C -0.014 4.014 21 N -0.201 5.201 22 C 0.004 3.996 23 C -0.249 4.249 24 C -0.014 4.014 25 C -0.306 4.306 26 C 0.295 3.705 27 O -0.504 6.504 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.251 0.749 43 H 0.158 0.842 44 H 0.112 0.888 45 H 0.088 0.912 46 H 0.142 0.858 47 H 0.220 0.780 48 H 0.202 0.798 49 H 0.184 0.816 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.327 -21.871 -14.068 28.779 hybrid contribution 0.074 0.469 1.872 1.932 sum -12.253 -21.403 -12.196 27.513 Atomic orbital electron populations 1.22050 0.96534 1.00901 1.00612 1.20673 0.93674 0.92063 0.88991 1.21961 0.99256 0.98162 1.00291 1.44089 1.64398 1.21334 1.01574 1.19038 0.96779 1.32957 0.88398 0.92632 1.25732 0.94603 1.01626 1.01609 1.70108 1.00109 1.53798 1.32227 0.85624 0.77242 0.77525 0.82239 1.21780 1.22667 1.19315 1.20723 0.93478 0.84207 0.99502 1.22123 0.99427 0.93108 1.01485 1.21142 0.92145 0.85087 1.00828 1.46001 1.11811 1.05348 1.73443 1.20852 0.89104 0.84707 0.75227 1.90714 1.18641 1.85805 1.51437 1.21861 0.98547 0.90905 1.06727 1.21618 0.90903 0.82955 1.05900 1.45579 1.38152 1.28373 1.08014 1.22822 0.92032 0.94826 0.89912 1.21219 1.03726 0.99444 1.00556 1.21896 0.92528 0.95899 0.91031 1.22099 1.05294 1.01302 1.01896 1.17743 0.84323 0.85743 0.82696 1.90954 1.58503 1.67749 1.33232 0.94612 0.91466 0.93273 0.92255 0.95755 0.91533 0.94589 0.94386 0.92300 0.95364 0.90958 0.93269 0.94389 0.91653 0.74850 0.84162 0.88794 0.91182 0.85788 0.77991 0.79832 0.81562 0.84157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.19 71.98 0.66 -3.95 16 2 C 0.15 5.85 3.37 44.99 0.15 6.00 16 3 C -0.14 -5.34 9.11 71.98 0.66 -4.68 16 4 N -0.59 -27.50 2.37 -678.06 -1.61 -29.11 16 5 C -0.24 -12.54 8.04 84.03 0.68 -11.87 16 6 H 0.06 2.91 7.14 -2.91 -0.02 2.89 16 7 C -0.04 -2.12 4.96 84.86 0.42 -1.70 16 8 N -0.92 -53.51 11.43 21.65 0.25 -53.27 16 9 Si 0.94 44.91 29.60 68.60 2.03 46.94 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 12 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 13 C 0.15 6.56 5.28 86.38 0.46 7.02 16 14 C -0.12 -4.24 5.65 30.59 0.17 -4.07 16 15 C 0.13 4.30 5.67 86.38 0.49 4.79 16 16 N -0.71 -18.13 5.56 -463.08 -2.57 -20.70 16 17 C 0.51 13.45 7.83 87.66 0.69 14.13 16 18 O -0.59 -20.42 15.98 -3.04 -0.05 -20.47 16 19 C -0.14 -2.45 6.02 29.85 0.18 -2.27 16 20 C 0.11 2.06 4.62 86.38 0.40 2.45 16 21 N -0.49 -8.17 2.58 -650.98 -1.68 -9.85 16 22 C 0.13 0.88 10.28 83.42 0.86 1.74 16 23 C -0.23 -1.02 10.01 22.08 0.22 -0.80 16 24 C 0.01 0.07 10.09 22.32 0.23 0.29 16 25 C -0.28 -4.99 9.99 22.40 0.22 -4.77 16 26 C 0.49 12.01 7.41 84.82 0.63 12.64 16 27 O -0.62 -21.95 16.64 -5.50 -0.09 -22.04 16 28 H 0.03 1.27 7.32 -2.39 -0.02 1.25 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 2.11 7.77 -2.39 -0.02 2.09 16 32 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 1.52 7.50 -2.38 -0.02 1.50 16 35 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 36 H 0.06 3.13 5.48 -2.39 -0.01 3.11 16 37 H 0.03 1.20 7.88 -2.38 -0.02 1.18 16 38 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 39 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.41 8.01 8.47 -92.70 -0.79 7.23 16 43 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.94 7.35 -2.39 -0.02 1.92 16 46 H 0.12 1.74 7.97 -2.39 -0.02 1.72 16 47 H 0.20 -0.31 8.04 -2.91 -0.02 -0.33 16 48 H 0.18 -0.51 8.06 -2.91 -0.02 -0.53 16 49 H 0.17 0.26 8.06 -2.91 -0.02 0.24 16 50 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -80.46 411.84 3.52 -76.95 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.13 Total: 16.59 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 7.11 Total: 14.96 kcal Atomic # 7 Polarization: -107.31 SS G_CDS: -5.61 Total: -112.92 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.14 Total: -42.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -80.46 3.52 -76.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481351301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.101 kcal (2) G-P(sol) polarization free energy of solvation -80.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds