Wall clock time and date at job start Tue Mar 31 2020 19:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00337 * 89.99693 * 4 3 2 6 6 O 1.21282 * 120.00258 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.53001 * 109.46986 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46723 * 180.02562 * 8 7 5 10 10 C 1.41373 * 126.80264 * 125.00141 * 9 8 7 11 11 C 1.35462 * 103.98630 * 179.97438 * 10 9 8 12 12 C 1.50695 * 126.77747 * 180.02562 * 11 10 9 13 13 O 1.34042 * 106.44288 * 359.97438 * 11 10 9 14 14 N 1.20919 * 111.56621 * 359.70709 * 13 11 10 15 15 C 1.46497 * 119.99929 * 269.99768 * 4 3 2 16 16 H 1.09002 * 110.64361 * 359.29773 * 15 4 3 17 17 C 1.55154 * 110.72494 * 122.44261 * 15 4 3 18 18 C 1.55119 * 101.49032 * 153.73360 * 17 15 4 19 19 N 1.47425 * 104.94262 * 323.22283 * 18 17 15 20 20 C 1.36937 * 125.64976 * 204.03738 * 19 18 17 21 21 H 1.07996 * 120.00414 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99686 * 359.95844 * 20 19 18 23 23 N 1.31614 * 120.00296 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99706 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47185 * 90.00152 * 24 22 20 26 26 H 1.48503 * 109.47472 * 210.00141 * 24 22 20 27 27 H 1.48494 * 109.47535 * 330.00216 * 24 22 20 28 28 C 1.47025 * 108.70178 * 24.00433 * 19 18 17 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 35 35 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 36 36 H 1.08999 * 109.46394 * 300.00002 * 7 5 4 37 37 H 1.08997 * 109.47055 * 59.99479 * 7 5 4 38 38 H 1.09002 * 109.47043 * 299.99300 * 8 7 5 39 39 H 1.08992 * 109.46986 * 60.00032 * 8 7 5 40 40 H 1.07994 * 128.01166 * 359.95580 * 10 9 8 41 41 H 1.09005 * 109.46694 * 90.00226 * 12 11 10 42 42 H 1.09001 * 109.47054 * 209.99895 * 12 11 10 43 43 H 1.08999 * 109.47077 * 330.00761 * 12 11 10 44 44 H 1.08998 * 111.00613 * 271.94357 * 17 15 4 45 45 H 1.09000 * 111.00283 * 35.78810 * 17 15 4 46 46 H 1.08997 * 110.41832 * 204.29390 * 18 17 15 47 47 H 1.09005 * 110.20673 * 82.04529 * 18 17 15 48 48 H 0.97007 * 120.00196 * 179.97438 * 23 22 20 49 49 H 1.09006 * 109.87788 * 239.52246 * 28 19 18 50 50 H 1.09001 * 110.00915 * 118.43148 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.4425 -1.1680 6 8 5.3912 1.4430 -1.1685 7 6 3.4244 1.4433 -2.4729 8 6 4.4182 1.4426 -3.6362 9 6 3.6642 1.4439 -4.9410 10 6 3.8037 2.3714 -5.9988 11 6 2.9180 1.9422 -6.9295 12 6 2.6477 2.5673 -8.2738 13 8 2.3302 0.8510 -6.4191 14 7 2.7605 0.5872 -5.3203 15 6 4.2380 1.4423 1.2678 16 1 3.5471 1.4547 2.1108 17 6 5.1866 0.2176 1.3535 18 6 6.2810 0.7415 2.3200 19 7 6.4452 2.1648 1.9726 20 6 7.5654 2.9182 2.2019 21 1 7.5868 3.9574 1.9084 22 6 8.6735 2.3464 2.8118 23 7 8.6473 1.0803 3.1702 24 14 10.2019 3.3740 3.1240 25 1 10.1049 4.0119 4.4616 26 1 11.4029 2.5018 3.0775 27 1 10.3131 4.4253 2.0812 28 6 5.2072 2.6411 1.3385 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.7974 0.5535 -2.5306 37 1 2.7980 2.3335 -2.5301 38 1 5.0456 2.3321 -3.5786 39 1 5.0441 0.5521 -3.5787 40 1 4.4633 3.2248 -6.0524 41 1 3.3110 2.1277 -9.0188 42 1 1.6112 2.3851 -8.5575 43 1 2.8257 3.6412 -8.2175 44 1 4.6720 -0.6467 1.7733 45 1 5.6097 -0.0180 0.3770 46 1 7.2156 0.2027 2.1641 47 1 5.9509 0.6389 3.3537 48 1 9.4218 0.6806 3.5961 49 1 5.4216 3.0043 0.3333 50 1 4.7661 3.4398 1.9349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481409310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:11 Heat of formation + Delta-G solvation = 47.730860 kcal Electronic energy + Delta-G solvation = -29633.758104 eV Core-core repulsion = 25665.207230 eV Total energy + Delta-G solvation = -3968.550874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.10033 -40.10183 -36.94393 -35.89099 -35.33906 -33.78496 -32.99177 -31.93981 -31.28065 -29.04589 -28.10384 -27.41503 -26.23172 -25.22887 -24.02764 -23.19995 -21.89741 -20.90844 -20.03978 -19.77761 -18.45653 -17.78783 -17.43817 -16.87847 -16.71843 -15.84239 -15.52191 -14.88335 -14.62985 -14.51711 -14.17671 -14.12290 -13.85363 -13.74125 -13.62044 -13.18386 -13.05134 -12.86982 -12.60239 -12.44878 -12.28978 -12.20833 -11.96340 -11.76354 -11.53697 -11.46906 -11.32744 -11.03274 -10.90444 -10.80629 -10.74581 -10.66201 -10.38105 -10.16381 -10.01630 -9.72131 -9.54093 -9.44630 -9.02514 -8.52471 -8.23521 -6.66696 -5.51839 -2.91815 1.25247 2.04272 2.88812 2.95056 3.19422 3.47905 3.52393 3.55117 4.00674 4.19425 4.60015 4.63629 4.75787 4.77142 4.86460 4.87282 4.98383 5.00739 5.06019 5.18321 5.19064 5.30313 5.38973 5.41506 5.49040 5.51962 5.55623 5.56943 5.64637 5.70606 5.79792 5.86345 5.88009 5.89586 5.92948 6.00085 6.06336 6.17241 6.37900 6.62781 6.67766 6.71985 6.85245 7.28274 7.61244 7.73745 7.75956 7.99561 8.10489 8.49705 8.55625 9.35560 9.96937 10.62455 11.52281 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.002892 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.343129 B = 9678.240779 C =11539.077502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.144 4.144 3 C 0.110 3.890 4 N -0.606 5.606 5 C 0.506 3.494 6 O -0.506 6.506 7 C -0.133 4.133 8 C -0.028 4.028 9 C 0.027 3.973 10 C -0.230 4.230 11 C -0.038 4.038 12 C -0.073 4.073 13 O 0.096 5.904 14 N -0.365 5.365 15 C 0.135 3.865 16 H 0.086 0.914 17 C -0.154 4.154 18 C 0.159 3.841 19 N -0.595 5.595 20 C -0.212 4.212 21 H 0.075 0.925 22 C -0.014 4.014 23 N -0.924 5.924 24 Si 0.913 3.087 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.133 3.867 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.171 0.829 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.078 0.922 46 H 0.106 0.894 47 H 0.008 0.992 48 H 0.250 0.750 49 H 0.039 0.961 50 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.975 0.805 -18.537 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C -0.014 4.014 4 N -0.339 5.339 5 C 0.293 3.707 6 O -0.381 6.381 7 C -0.174 4.174 8 C -0.066 4.066 9 C -0.132 4.132 10 C -0.252 4.252 11 C -0.101 4.101 12 C -0.131 4.131 13 O 0.030 5.970 14 N -0.069 5.069 15 C 0.032 3.968 16 H 0.104 0.896 17 C -0.193 4.193 18 C 0.033 3.967 19 N -0.321 5.321 20 C -0.341 4.341 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.574 5.574 24 Si 0.744 3.256 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.006 3.994 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.189 0.811 41 H 0.105 0.895 42 H 0.101 0.899 43 H 0.109 0.891 44 H 0.070 0.930 45 H 0.097 0.903 46 H 0.124 0.876 47 H 0.026 0.974 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -18.636 -0.281 -17.889 25.834 hybrid contribution 1.035 1.214 0.132 1.601 sum -17.601 0.933 -17.757 25.019 Atomic orbital electron populations 1.21699 0.95299 1.01891 1.01778 1.21991 0.95873 0.97414 1.03015 1.21642 0.80033 0.96767 1.02973 1.48001 1.05944 1.73799 1.06200 1.20422 0.88250 0.77060 0.84925 1.90833 1.13260 1.47043 1.86945 1.21668 0.99061 1.04323 0.92328 1.19769 0.95735 1.05568 0.85540 1.23656 0.97406 0.92868 0.99239 1.22488 1.04502 1.04319 0.93878 1.24504 0.96314 0.90380 0.98931 1.20323 1.03845 1.00383 0.88525 1.84818 1.50946 1.37492 1.23776 1.73832 1.14290 1.22362 0.96465 1.22182 0.93202 0.98086 0.83294 0.89622 1.23434 0.97960 0.95265 1.02672 1.21866 0.97255 0.85279 0.92273 1.44276 1.10592 1.07802 1.69450 1.19050 0.90164 0.93033 1.31819 0.90729 1.24755 0.98279 0.96424 1.01472 1.69800 1.29475 1.10931 1.47151 0.86079 0.82785 0.78869 0.77832 1.21805 1.21739 1.20793 1.21483 0.87662 0.93338 0.96933 0.92565 0.92728 0.92544 0.91773 0.91261 0.90739 0.90351 0.88789 0.89281 0.88584 0.88898 0.81128 0.89466 0.89905 0.89071 0.93020 0.90307 0.87610 0.97383 0.93913 0.94356 0.96830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 37.16 0.37 -0.80 16 2 C -0.14 -1.43 6.26 -26.73 -0.17 -1.60 16 3 C 0.11 1.17 5.20 -4.04 -0.02 1.15 16 4 N -0.61 -9.16 2.54 -164.03 -0.42 -9.58 16 5 C 0.51 8.23 6.77 -10.98 -0.07 8.16 16 6 O -0.51 -10.66 12.34 5.56 0.07 -10.59 16 7 C -0.13 -1.63 4.23 -27.88 -0.12 -1.74 16 8 C -0.03 -0.35 5.10 -27.88 -0.14 -0.49 16 9 C 0.03 0.32 6.59 -82.10 -0.54 -0.22 16 10 C -0.23 -2.17 11.05 -39.38 -0.44 -2.60 16 11 C -0.04 -0.31 7.49 -35.30 -0.26 -0.58 16 12 C -0.07 -0.29 10.45 36.00 0.38 0.09 16 13 O 0.10 1.04 11.20 17.17 0.19 1.24 16 14 N -0.36 -4.60 12.06 33.42 0.40 -4.20 16 15 C 0.14 2.51 3.43 -66.10 -0.23 2.29 16 16 H 0.09 1.43 7.86 -51.93 -0.41 1.03 16 17 C -0.15 -3.24 6.44 -24.47 -0.16 -3.40 16 18 C 0.16 4.13 5.89 -2.42 -0.01 4.12 16 19 N -0.60 -16.40 3.40 -169.93 -0.58 -16.98 16 20 C -0.21 -6.30 10.27 -15.06 -0.15 -6.45 16 21 H 0.07 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 23 N -0.92 -28.32 10.09 55.49 0.56 -27.76 16 24 Si 0.91 23.17 29.55 -169.99 -5.02 18.15 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.13 3.04 6.48 -3.06 -0.02 3.02 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.68 7.22 -51.93 -0.38 0.30 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.68 6.44 -51.93 -0.33 0.34 16 35 H 0.08 0.77 7.95 -51.93 -0.41 0.36 16 36 H 0.09 1.09 7.19 -51.93 -0.37 0.72 16 37 H 0.09 0.94 7.40 -51.93 -0.38 0.55 16 38 H 0.10 1.20 8.09 -51.93 -0.42 0.78 16 39 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 40 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.81 6.04 -51.93 -0.31 1.50 16 46 H 0.11 3.13 5.87 -51.93 -0.31 2.82 16 47 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.04 0.93 6.07 -51.93 -0.32 0.62 16 50 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 397.38 15.07 5.99 5.99 Total: -1.00 -35.57 397.38 -8.75 -44.32 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.26 Total: -1.00 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.69 Total: 0.41 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.03 Total: -58.51 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.26 Total: -9.36 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.57 -8.75 -44.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481409310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.055 kcal (2) G-P(sol) polarization free energy of solvation -35.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds