Wall clock time and date at job start Tue Mar 31 2020 19:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.34775 * 120.00337 * 89.99693 * 4 3 2 6 6 O 1.21282 * 120.00258 * 179.97438 * 5 4 3 7 7 C 1.50707 * 119.99977 * 0.02562 * 5 4 3 8 8 C 1.53001 * 109.46986 * 180.02562 * 7 5 4 9 9 C 1.50701 * 109.46723 * 180.02562 * 8 7 5 10 10 C 1.41373 * 126.80264 * 125.00141 * 9 8 7 11 11 C 1.35462 * 103.98630 * 179.97438 * 10 9 8 12 12 C 1.50695 * 126.77747 * 180.02562 * 11 10 9 13 13 O 1.34042 * 106.44288 * 359.97438 * 11 10 9 14 14 N 1.20919 * 111.56621 * 359.70709 * 13 11 10 15 15 C 1.46497 * 119.99929 * 269.99768 * 4 3 2 16 16 H 1.09002 * 110.64361 * 359.29773 * 15 4 3 17 17 C 1.55154 * 110.72494 * 122.44261 * 15 4 3 18 18 C 1.55119 * 101.49032 * 153.73360 * 17 15 4 19 19 N 1.47425 * 104.94262 * 323.22283 * 18 17 15 20 20 C 1.36937 * 125.64976 * 204.03738 * 19 18 17 21 21 H 1.07996 * 120.00414 * 179.97438 * 20 19 18 22 22 C 1.38812 * 119.99686 * 359.95844 * 20 19 18 23 23 N 1.31614 * 120.00296 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99706 * 179.97438 * 22 20 19 25 25 H 1.48510 * 109.47185 * 90.00152 * 24 22 20 26 26 H 1.48503 * 109.47472 * 210.00141 * 24 22 20 27 27 H 1.48494 * 109.47535 * 330.00216 * 24 22 20 28 28 C 1.47025 * 108.70178 * 24.00433 * 19 18 17 29 29 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 31 31 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 35 35 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 36 36 H 1.08999 * 109.46394 * 300.00002 * 7 5 4 37 37 H 1.08997 * 109.47055 * 59.99479 * 7 5 4 38 38 H 1.09002 * 109.47043 * 299.99300 * 8 7 5 39 39 H 1.08992 * 109.46986 * 60.00032 * 8 7 5 40 40 H 1.07994 * 128.01166 * 359.95580 * 10 9 8 41 41 H 1.09005 * 109.46694 * 90.00226 * 12 11 10 42 42 H 1.09001 * 109.47054 * 209.99895 * 12 11 10 43 43 H 1.08999 * 109.47077 * 330.00761 * 12 11 10 44 44 H 1.08998 * 111.00613 * 271.94357 * 17 15 4 45 45 H 1.09000 * 111.00283 * 35.78810 * 17 15 4 46 46 H 1.08997 * 110.41832 * 204.29390 * 18 17 15 47 47 H 1.09005 * 110.20673 * 82.04529 * 18 17 15 48 48 H 0.97007 * 120.00196 * 179.97438 * 23 22 20 49 49 H 1.09006 * 109.87788 * 239.52246 * 28 19 18 50 50 H 1.09001 * 110.00915 * 118.43148 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1784 1.4425 -1.1680 6 8 5.3912 1.4430 -1.1685 7 6 3.4244 1.4433 -2.4729 8 6 4.4182 1.4426 -3.6362 9 6 3.6642 1.4439 -4.9410 10 6 3.8037 2.3714 -5.9988 11 6 2.9180 1.9422 -6.9295 12 6 2.6477 2.5673 -8.2738 13 8 2.3302 0.8510 -6.4191 14 7 2.7605 0.5872 -5.3203 15 6 4.2380 1.4423 1.2678 16 1 3.5471 1.4547 2.1108 17 6 5.1866 0.2176 1.3535 18 6 6.2810 0.7415 2.3200 19 7 6.4452 2.1648 1.9726 20 6 7.5654 2.9182 2.2019 21 1 7.5868 3.9574 1.9084 22 6 8.6735 2.3464 2.8118 23 7 8.6473 1.0803 3.1702 24 14 10.2019 3.3740 3.1240 25 1 10.1049 4.0119 4.4616 26 1 11.4029 2.5018 3.0775 27 1 10.3131 4.4253 2.0812 28 6 5.2072 2.6411 1.3385 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3635 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.7974 0.5535 -2.5306 37 1 2.7980 2.3335 -2.5301 38 1 5.0456 2.3321 -3.5786 39 1 5.0441 0.5521 -3.5787 40 1 4.4633 3.2248 -6.0524 41 1 3.3110 2.1277 -9.0188 42 1 1.6112 2.3851 -8.5575 43 1 2.8257 3.6412 -8.2175 44 1 4.6720 -0.6467 1.7733 45 1 5.6097 -0.0180 0.3770 46 1 7.2156 0.2027 2.1641 47 1 5.9509 0.6389 3.3537 48 1 9.4218 0.6806 3.5961 49 1 5.4216 3.0043 0.3333 50 1 4.7661 3.4398 1.9349 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481409310.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:10 Heat of formation + Delta-G solvation = 26.332812 kcal Electronic energy + Delta-G solvation = -29634.685993 eV Core-core repulsion = 25665.207230 eV Total energy + Delta-G solvation = -3969.478763 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.90384 -41.45339 -38.63507 -37.12207 -36.32397 -34.64841 -34.36287 -33.28201 -32.48164 -30.98153 -29.12130 -28.61543 -27.16987 -26.84841 -25.60629 -24.00976 -22.84707 -22.31586 -21.99799 -20.65259 -19.73452 -18.95455 -18.62588 -18.25690 -17.92049 -17.22190 -16.70813 -16.65191 -16.00087 -15.61866 -15.44149 -15.27977 -15.01901 -14.70015 -14.44006 -14.31927 -13.97648 -13.92769 -13.79811 -13.59903 -13.47350 -13.34081 -13.09146 -13.01311 -12.95050 -12.77645 -12.72522 -12.57265 -12.39129 -12.20055 -12.03756 -12.02173 -11.88008 -11.81915 -11.61662 -11.34845 -11.02415 -10.74453 -10.48260 -10.22017 -9.58652 -8.86077 -7.76914 -5.20532 0.54524 1.23252 1.42713 1.46482 1.54986 1.67818 1.96621 2.27529 2.49974 3.12587 3.31834 3.43292 3.63502 3.74838 3.89373 3.91943 3.98540 4.04099 4.10186 4.17201 4.21450 4.25846 4.39586 4.44299 4.47302 4.56266 4.58938 4.67529 4.72893 4.76385 4.76715 4.84286 4.90881 4.96849 4.97228 4.99318 4.99761 5.06450 5.12245 5.24587 5.27152 5.28876 5.42265 5.47712 5.62403 5.76305 5.80280 6.30184 6.48651 7.10425 7.28252 7.33714 7.78532 8.42924 9.25195 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011760 B = 0.002892 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.343129 B = 9678.240779 C =11539.077502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.104 3.896 4 N -0.601 5.601 5 C 0.502 3.498 6 O -0.563 6.563 7 C -0.117 4.117 8 C -0.023 4.023 9 C 0.014 3.986 10 C -0.244 4.244 11 C -0.025 4.025 12 C -0.073 4.073 13 O 0.088 5.912 14 N -0.391 5.391 15 C 0.153 3.847 16 H 0.115 0.885 17 C -0.138 4.138 18 C 0.162 3.838 19 N -0.618 5.618 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.071 4.071 23 N -0.951 5.951 24 Si 0.983 3.017 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.272 1.272 28 C 0.130 3.870 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.190 0.810 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.080 0.920 45 H 0.056 0.944 46 H 0.065 0.935 47 H -0.005 1.005 48 H 0.246 0.754 49 H 0.022 0.978 50 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.495 2.105 -20.005 29.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.179 4.179 3 C -0.017 4.017 4 N -0.333 5.333 5 C 0.291 3.709 6 O -0.441 6.441 7 C -0.157 4.157 8 C -0.061 4.061 9 C -0.144 4.144 10 C -0.265 4.265 11 C -0.088 4.088 12 C -0.130 4.130 13 O 0.023 5.977 14 N -0.097 5.097 15 C 0.049 3.951 16 H 0.133 0.867 17 C -0.178 4.178 18 C 0.037 3.963 19 N -0.344 5.344 20 C -0.364 4.364 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.601 5.601 24 Si 0.811 3.189 25 H -0.208 1.208 26 H -0.219 1.219 27 H -0.197 1.197 28 C 0.004 3.996 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.207 0.793 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.128 0.872 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.083 0.917 47 H 0.013 0.987 48 H 0.056 0.944 49 H 0.040 0.960 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -21.233 1.026 -19.372 28.761 hybrid contribution 1.788 0.817 0.510 2.031 sum -19.445 1.843 -18.863 27.154 Atomic orbital electron populations 1.21659 0.93371 1.02388 1.02723 1.21933 0.97430 0.96456 1.02070 1.21989 0.76820 0.97874 1.05026 1.48039 1.07782 1.72917 1.04562 1.21134 0.87793 0.75618 0.86332 1.90817 1.15899 1.49588 1.87791 1.21582 0.98600 1.05875 0.89612 1.19611 0.95704 1.04253 0.86572 1.23627 0.97636 0.93792 0.99372 1.22767 1.05489 1.04831 0.93460 1.25262 0.94776 0.88843 0.99949 1.20580 1.05066 1.01166 0.86182 1.84775 1.51150 1.38459 1.23354 1.73818 1.15185 1.23217 0.97493 1.21893 0.92863 0.94353 0.86027 0.86719 1.23184 0.97166 0.97290 1.00122 1.21613 0.97099 0.84844 0.92779 1.44570 1.11699 1.08394 1.69705 1.19410 0.91524 0.93489 1.31999 0.90723 1.25667 1.01343 0.97736 1.01542 1.70074 1.29976 1.12424 1.47614 0.85008 0.78479 0.77370 0.78046 1.20796 1.21864 1.19743 1.21616 0.87090 0.95384 0.95504 0.91678 0.91719 0.92347 0.92657 0.92392 0.88393 0.88637 0.87735 0.86769 0.89118 0.91143 0.79307 0.88033 0.88529 0.87195 0.90152 0.92559 0.91687 0.98738 0.94385 0.96032 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.14 -2.42 6.26 30.59 0.19 -2.23 16 3 C 0.10 1.92 5.20 86.38 0.45 2.36 16 4 N -0.60 -17.30 2.54 -791.26 -2.01 -19.31 16 5 C 0.50 16.23 6.77 87.66 0.59 16.83 16 6 O -0.56 -24.62 12.34 -3.04 -0.04 -24.66 16 7 C -0.12 -2.73 4.23 29.85 0.13 -2.60 16 8 C -0.02 -0.58 5.10 29.85 0.15 -0.43 16 9 C 0.01 0.31 6.59 43.58 0.29 0.60 16 10 C -0.24 -4.24 11.05 22.40 0.25 -3.99 16 11 C -0.02 -0.36 7.49 25.04 0.19 -0.17 16 12 C -0.07 -0.34 10.45 71.23 0.74 0.40 16 13 O 0.09 1.80 11.20 71.62 0.80 2.61 16 14 N -0.39 -9.58 12.06 -49.55 -0.60 -10.18 16 15 C 0.15 5.54 3.43 46.18 0.16 5.70 16 16 H 0.11 3.54 7.86 -2.39 -0.02 3.52 16 17 C -0.14 -5.89 6.44 32.06 0.21 -5.69 16 18 C 0.16 8.78 5.89 86.93 0.51 9.30 16 19 N -0.62 -35.11 3.40 -691.55 -2.35 -37.46 16 20 C -0.24 -14.38 10.27 84.03 0.86 -13.51 16 21 H 0.07 4.42 7.83 -2.91 -0.02 4.39 16 22 C -0.07 -4.31 5.49 84.86 0.47 -3.85 16 23 N -0.95 -60.42 10.09 21.65 0.22 -60.20 16 24 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 25 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 26 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 27 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 28 C 0.13 6.02 6.48 86.73 0.56 6.58 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 1.06 7.22 -2.39 -0.02 1.04 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.39 6.44 -2.39 -0.02 1.38 16 35 H 0.10 1.50 7.95 -2.39 -0.02 1.48 16 36 H 0.10 2.27 7.19 -2.39 -0.02 2.26 16 37 H 0.11 2.12 7.40 -2.39 -0.02 2.10 16 38 H 0.09 2.35 8.09 -2.39 -0.02 2.33 16 39 H 0.07 2.07 8.10 -2.39 -0.02 2.05 16 40 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.11 0.16 8.14 -2.39 -0.02 0.15 16 44 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 45 H 0.06 2.68 6.04 -2.39 -0.01 2.66 16 46 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 47 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 48 H 0.25 15.10 8.31 -92.70 -0.77 14.33 16 49 H 0.02 1.08 6.07 -2.38 -0.01 1.06 16 50 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -81.97 397.38 5.44 -76.53 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.92 Total: 13.80 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.46 Total: 8.21 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -4.74 Total: -127.14 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.76 Total: -22.05 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -81.97 5.44 -76.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481409310.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.861 kcal (2) G-P(sol) polarization free energy of solvation -81.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds