Wall clock time and date at job start Tue Mar 31 2020 18:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46723 * 2 1 4 4 N 1.46498 * 109.47149 * 119.99585 * 2 1 3 5 5 C 1.35534 * 125.68239 * 308.11871 * 4 2 1 6 6 C 1.35457 * 108.87028 * 179.83011 * 5 4 2 7 7 C 1.39829 * 107.86618 * 0.42919 * 6 5 4 8 8 C 1.37657 * 125.67289 * 128.42405 * 4 2 1 9 9 C 1.46672 * 126.23520 * 0.02711 * 8 4 2 10 10 O 1.21698 * 120.00063 * 201.19021 * 9 8 4 11 11 N 1.34773 * 120.00088 * 21.19002 * 9 8 4 12 12 C 1.46505 * 120.00150 * 186.06917 * 11 9 8 13 13 C 1.53005 * 109.54287 * 297.63983 * 12 11 9 14 14 N 1.46495 * 109.46630 * 305.49215 * 13 12 11 15 15 C 1.36944 * 119.99695 * 185.04863 * 14 13 12 16 16 H 1.08002 * 120.00113 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99987 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99925 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47068 * 120.00146 * 19 17 15 22 22 H 1.48498 * 109.47419 * 240.00163 * 19 17 15 23 23 C 1.53178 * 109.54397 * 177.45950 * 12 11 9 24 24 C 1.53281 * 109.06345 * 297.02695 * 23 12 11 25 25 O 1.42894 * 109.46368 * 302.44775 * 24 23 12 26 26 C 1.42905 * 114.10134 * 61.15642 * 25 24 23 27 27 C 1.53093 * 109.41415 * 298.84372 * 26 25 24 28 28 H 1.08997 * 109.47253 * 299.99357 * 1 2 3 29 29 H 1.09002 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47460 * 60.00018 * 1 2 3 31 31 H 1.08995 * 109.47758 * 240.00520 * 2 1 3 32 32 H 1.09000 * 109.47138 * 300.00179 * 3 2 1 33 33 H 1.09007 * 109.47203 * 60.00071 * 3 2 1 34 34 H 1.08997 * 109.47211 * 179.97438 * 3 2 1 35 35 H 1.07996 * 125.55956 * 359.97438 * 5 4 2 36 36 H 1.08000 * 126.06458 * 180.15009 * 6 5 4 37 37 H 1.07998 * 126.45793 * 179.77107 * 7 6 5 38 38 H 0.97000 * 120.00496 * 6.06977 * 11 9 8 39 39 H 1.08998 * 109.46996 * 65.49306 * 13 12 11 40 40 H 1.08993 * 109.46884 * 185.49271 * 13 12 11 41 41 H 0.96997 * 120.00907 * 5.04344 * 14 13 12 42 42 H 0.97001 * 119.99634 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.52343 * 57.02260 * 23 12 11 44 44 H 1.09003 * 109.51757 * 177.20737 * 23 12 11 45 45 H 1.09006 * 109.45362 * 182.44636 * 24 23 12 46 46 H 1.08999 * 109.46634 * 62.45276 * 24 23 12 47 47 H 1.09000 * 109.48457 * 178.85896 * 26 25 24 48 48 H 1.09003 * 109.48534 * 58.83113 * 26 25 24 49 49 H 1.08995 * 109.52403 * 297.70191 * 27 26 25 50 50 H 1.09004 * 109.57397 * 177.53925 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6411 -0.4263 2.4709 6 6 2.2985 -1.2666 3.3054 7 6 3.1263 -2.0825 2.5281 8 6 2.9411 -1.7118 1.2131 9 6 3.6066 -2.2983 0.0450 10 8 4.0913 -3.4123 0.1164 11 7 3.6814 -1.6036 -1.1075 12 6 4.2261 -2.2373 -2.3108 13 6 5.6872 -2.6222 -2.0699 14 7 6.4367 -1.4426 -1.6306 15 6 7.7923 -1.5200 -1.4526 16 1 8.3087 -2.4507 -1.6356 17 6 8.5026 -0.4023 -1.0368 18 7 7.8732 0.7318 -0.8131 19 14 10.3516 -0.5080 -0.7932 20 1 10.8145 -1.8834 -1.1082 21 1 11.0259 0.4595 -1.6958 22 1 10.6846 -0.1840 0.6172 23 6 4.1408 -1.2605 -3.4877 24 6 2.6678 -0.9438 -3.7697 25 8 1.9630 -2.1574 -4.0390 26 6 1.9703 -3.0892 -2.9556 27 6 3.4132 -3.4929 -2.6414 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1298 1.4427 0.0005 35 1 0.9305 0.3292 2.7718 36 1 2.2038 -1.2976 4.3808 37 1 3.7860 -2.8575 2.8895 38 1 3.3746 -0.6840 -1.1402 39 1 5.7378 -3.3924 -1.3003 40 1 6.1196 -3.0037 -2.9948 41 1 5.9729 -0.6068 -1.4658 42 1 8.3696 1.5128 -0.5222 43 1 4.6717 -0.3419 -3.2379 44 1 4.5911 -1.7139 -4.3707 45 1 2.5975 -0.2831 -4.6339 46 1 2.2288 -0.4537 -2.9008 47 1 1.3975 -3.9740 -3.2332 48 1 1.5222 -2.6274 -2.0758 49 1 3.8489 -3.9912 -3.5073 50 1 3.4253 -4.1699 -1.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484872067.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:08 Heat of formation + Delta-G solvation = -10.645910 kcal Electronic energy + Delta-G solvation = -31921.706772 eV Core-core repulsion = 27950.624491 eV Total energy + Delta-G solvation = -3971.082281 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.55577 -40.19764 -38.08850 -35.97336 -35.43406 -33.62418 -31.89696 -31.11437 -30.41113 -29.78357 -28.84438 -27.60816 -26.52896 -23.78675 -23.63616 -23.15117 -22.22306 -21.43872 -20.24581 -19.65799 -19.10830 -17.51337 -17.22982 -16.22572 -15.99856 -15.69544 -15.50756 -15.28944 -14.80181 -14.66095 -14.33331 -14.24909 -14.00427 -13.75808 -13.40293 -13.23184 -12.85410 -12.76897 -12.65304 -12.50925 -12.40521 -12.32322 -12.18796 -12.06016 -11.75643 -11.60564 -11.56911 -11.33225 -11.19127 -10.90589 -10.80875 -10.53366 -10.36596 -10.02037 -9.73395 -9.60791 -9.40814 -8.79299 -8.65366 -8.61764 -8.02446 -6.83438 -5.73241 -2.99134 1.73109 2.73017 2.92885 3.32144 3.46068 3.52313 3.54277 3.71981 3.87824 4.23758 4.57665 4.61000 4.65423 4.70934 4.83525 4.96022 5.03315 5.08552 5.11036 5.18458 5.22829 5.28545 5.36283 5.40416 5.49252 5.58263 5.61780 5.64036 5.68698 5.71068 5.77145 5.90239 5.92796 6.03065 6.07114 6.20989 6.26049 6.30191 6.32728 6.44560 6.49886 6.82757 6.95224 7.06604 7.13468 7.18399 7.30359 7.75757 7.80138 8.46170 8.54368 9.57871 10.15177 10.50820 11.50195 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.005096 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.038203 B = 5493.284345 C = 6825.736655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.106 3.894 3 C -0.171 4.171 4 N -0.420 5.420 5 C 0.014 3.986 6 C -0.211 4.211 7 C -0.113 4.113 8 C -0.046 4.046 9 C 0.597 3.403 10 O -0.518 6.518 11 N -0.718 5.718 12 C 0.173 3.827 13 C 0.143 3.857 14 N -0.724 5.724 15 C -0.229 4.229 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.936 5.936 19 Si 0.905 3.095 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.155 4.155 24 C 0.061 3.939 25 O -0.383 6.383 26 C 0.066 3.934 27 C -0.165 4.165 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.161 0.839 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.392 0.608 39 H 0.045 0.955 40 H 0.026 0.974 41 H 0.380 0.620 42 H 0.252 0.748 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.040 0.960 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.081 0.919 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.629 0.037 -0.220 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.004 3.996 3 C -0.229 4.229 4 N -0.098 5.098 5 C -0.120 4.120 6 C -0.235 4.235 7 C -0.140 4.140 8 C -0.158 4.158 9 C 0.384 3.616 10 O -0.393 6.393 11 N -0.374 5.374 12 C 0.087 3.913 13 C 0.014 3.986 14 N -0.368 5.368 15 C -0.360 4.360 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.586 5.586 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.194 4.194 24 C -0.016 4.016 25 O -0.302 6.302 26 C -0.011 4.011 27 C -0.204 4.204 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.179 0.821 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.231 0.769 39 H 0.063 0.937 40 H 0.044 0.956 41 H 0.214 0.786 42 H 0.062 0.938 43 H 0.109 0.891 44 H 0.108 0.892 45 H 0.114 0.886 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.061 0.939 49 H 0.100 0.900 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.308 -0.738 -0.726 19.336 hybrid contribution 1.065 0.988 0.639 1.588 sum -18.243 0.251 -0.087 18.245 Atomic orbital electron populations 1.22148 0.92888 1.03287 1.03441 1.21856 0.96026 0.94527 0.87189 1.22292 1.03292 0.93792 1.03509 1.44282 1.32353 1.26756 1.06366 1.21747 1.04297 1.03274 0.82717 1.20790 1.02878 1.00688 0.99157 1.21252 1.01086 1.01274 0.90354 1.20590 1.01566 0.97581 0.96044 1.16924 0.78631 0.85094 0.80919 1.90772 1.46540 1.19447 1.82571 1.46358 1.65102 1.15903 1.09994 1.20645 0.95051 0.92240 0.83375 1.21103 0.87259 0.92172 0.98034 1.42178 1.04803 1.08487 1.81375 1.19280 0.83739 0.95990 1.37001 0.91255 1.24671 0.97871 0.95871 1.02706 1.69652 1.34401 1.00849 1.53705 0.86123 0.85722 0.77119 0.77318 1.20610 1.22034 1.21988 1.22486 0.96927 1.01396 0.98543 1.22659 0.91429 0.86677 1.00840 1.87904 1.74495 1.28046 1.39716 1.22516 0.96409 0.92635 0.89502 1.22550 0.95557 0.98533 1.03719 0.91433 0.91633 0.90362 0.87927 0.90285 0.91309 0.90705 0.82119 0.84292 0.83806 0.76943 0.93698 0.95619 0.78635 0.93815 0.89088 0.89189 0.88599 0.94203 0.89060 0.93900 0.90019 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.12 37.16 0.34 -0.86 16 2 C 0.11 1.07 2.80 -67.93 -0.19 0.88 16 3 C -0.17 -1.61 9.22 37.16 0.34 -1.26 16 4 N -0.42 -5.39 2.64 -105.81 -0.28 -5.67 16 5 C 0.01 0.16 10.39 -16.91 -0.18 -0.02 16 6 C -0.21 -2.76 10.81 -39.98 -0.43 -3.19 16 7 C -0.11 -1.83 10.72 -39.12 -0.42 -2.25 16 8 C -0.05 -0.76 6.81 -81.98 -0.56 -1.32 16 9 C 0.60 10.92 7.04 -12.86 -0.09 10.83 16 10 O -0.52 -10.96 13.27 5.19 0.07 -10.89 16 11 N -0.72 -11.60 2.73 -48.72 -0.13 -11.73 16 12 C 0.17 2.85 0.32 -131.63 -0.04 2.80 16 13 C 0.14 3.05 4.90 -4.04 -0.02 3.03 16 14 N -0.72 -18.43 5.17 -59.91 -0.31 -18.74 16 15 C -0.23 -6.56 9.99 -15.06 -0.15 -6.71 16 16 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 18 N -0.94 -28.25 13.06 55.49 0.72 -27.52 16 19 Si 0.91 23.02 29.55 -169.99 -5.02 18.00 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 23 C -0.16 -2.27 4.81 -26.49 -0.13 -2.40 16 24 C 0.06 0.72 6.67 37.30 0.25 0.97 16 25 O -0.38 -4.98 10.77 -35.23 -0.38 -5.36 16 26 C 0.07 0.83 6.68 37.21 0.25 1.08 16 27 C -0.16 -2.41 4.73 -26.59 -0.13 -2.54 16 28 H 0.07 0.44 7.57 -51.93 -0.39 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.11 3.67 -51.93 -0.19 0.92 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.16 1.33 7.78 -52.49 -0.41 0.92 16 36 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 38 H 0.39 5.73 4.57 -40.82 -0.19 5.55 16 39 H 0.05 1.08 6.32 -51.93 -0.33 0.75 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.38 9.92 6.65 -40.82 -0.27 9.65 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.09 1.48 7.43 -51.93 -0.39 1.09 16 44 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.04 0.42 6.02 -51.93 -0.31 0.11 16 47 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 49 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 50 H 0.10 1.56 6.15 -51.93 -0.32 1.24 16 LS Contribution 386.54 15.07 5.83 5.83 Total: -1.00 -33.95 386.54 -8.57 -42.52 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -7.81 Total: 15.10 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.25 Total: -1.52 kcal Atomic # 7 Polarization: -63.67 SS G_CDS: 0.00 Total: -63.66 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.31 Total: -16.25 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 18.00 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.95 -8.57 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484872067.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.871 kcal (2) G-P(sol) polarization free energy of solvation -33.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds