Wall clock time and date at job start Tue Mar 31 2020 18:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46723 * 2 1 4 4 N 1.46498 * 109.47149 * 119.99585 * 2 1 3 5 5 C 1.35534 * 125.68239 * 308.11871 * 4 2 1 6 6 C 1.35457 * 108.87028 * 179.83011 * 5 4 2 7 7 C 1.39829 * 107.86618 * 0.42919 * 6 5 4 8 8 C 1.37657 * 125.67289 * 128.42405 * 4 2 1 9 9 C 1.46672 * 126.23520 * 0.02711 * 8 4 2 10 10 O 1.21698 * 120.00063 * 201.19021 * 9 8 4 11 11 N 1.34773 * 120.00088 * 21.19002 * 9 8 4 12 12 C 1.46505 * 120.00150 * 186.06917 * 11 9 8 13 13 C 1.53005 * 109.54287 * 297.63983 * 12 11 9 14 14 N 1.46495 * 109.46630 * 305.49215 * 13 12 11 15 15 C 1.36944 * 119.99695 * 185.04863 * 14 13 12 16 16 H 1.08002 * 120.00113 * 359.97438 * 15 14 13 17 17 C 1.38810 * 119.99987 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99925 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47068 * 120.00146 * 19 17 15 22 22 H 1.48498 * 109.47419 * 240.00163 * 19 17 15 23 23 C 1.53178 * 109.54397 * 177.45950 * 12 11 9 24 24 C 1.53281 * 109.06345 * 297.02695 * 23 12 11 25 25 O 1.42894 * 109.46368 * 302.44775 * 24 23 12 26 26 C 1.42905 * 114.10134 * 61.15642 * 25 24 23 27 27 C 1.53093 * 109.41415 * 298.84372 * 26 25 24 28 28 H 1.08997 * 109.47253 * 299.99357 * 1 2 3 29 29 H 1.09002 * 109.46636 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47460 * 60.00018 * 1 2 3 31 31 H 1.08995 * 109.47758 * 240.00520 * 2 1 3 32 32 H 1.09000 * 109.47138 * 300.00179 * 3 2 1 33 33 H 1.09007 * 109.47203 * 60.00071 * 3 2 1 34 34 H 1.08997 * 109.47211 * 179.97438 * 3 2 1 35 35 H 1.07996 * 125.55956 * 359.97438 * 5 4 2 36 36 H 1.08000 * 126.06458 * 180.15009 * 6 5 4 37 37 H 1.07998 * 126.45793 * 179.77107 * 7 6 5 38 38 H 0.97000 * 120.00496 * 6.06977 * 11 9 8 39 39 H 1.08998 * 109.46996 * 65.49306 * 13 12 11 40 40 H 1.08993 * 109.46884 * 185.49271 * 13 12 11 41 41 H 0.96997 * 120.00907 * 5.04344 * 14 13 12 42 42 H 0.97001 * 119.99634 * 179.97438 * 18 17 15 43 43 H 1.08998 * 109.52343 * 57.02260 * 23 12 11 44 44 H 1.09003 * 109.51757 * 177.20737 * 23 12 11 45 45 H 1.09006 * 109.45362 * 182.44636 * 24 23 12 46 46 H 1.08999 * 109.46634 * 62.45276 * 24 23 12 47 47 H 1.09000 * 109.48457 * 178.85896 * 26 25 24 48 48 H 1.09003 * 109.48534 * 58.83113 * 26 25 24 49 49 H 1.08995 * 109.52403 * 297.70191 * 27 26 25 50 50 H 1.09004 * 109.57397 * 177.53925 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6411 -0.4263 2.4709 6 6 2.2985 -1.2666 3.3054 7 6 3.1263 -2.0825 2.5281 8 6 2.9411 -1.7118 1.2131 9 6 3.6066 -2.2983 0.0450 10 8 4.0913 -3.4123 0.1164 11 7 3.6814 -1.6036 -1.1075 12 6 4.2261 -2.2373 -2.3108 13 6 5.6872 -2.6222 -2.0699 14 7 6.4367 -1.4426 -1.6306 15 6 7.7923 -1.5200 -1.4526 16 1 8.3087 -2.4507 -1.6356 17 6 8.5026 -0.4023 -1.0368 18 7 7.8732 0.7318 -0.8131 19 14 10.3516 -0.5080 -0.7932 20 1 10.8145 -1.8834 -1.1082 21 1 11.0259 0.4595 -1.6958 22 1 10.6846 -0.1840 0.6172 23 6 4.1408 -1.2605 -3.4877 24 6 2.6678 -0.9438 -3.7697 25 8 1.9630 -2.1574 -4.0390 26 6 1.9703 -3.0892 -2.9556 27 6 3.4132 -3.4929 -2.6414 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1298 1.4427 0.0005 35 1 0.9305 0.3292 2.7718 36 1 2.2038 -1.2976 4.3808 37 1 3.7860 -2.8575 2.8895 38 1 3.3746 -0.6840 -1.1402 39 1 5.7378 -3.3924 -1.3003 40 1 6.1196 -3.0037 -2.9948 41 1 5.9729 -0.6068 -1.4658 42 1 8.3696 1.5128 -0.5222 43 1 4.6717 -0.3419 -3.2379 44 1 4.5911 -1.7139 -4.3707 45 1 2.5975 -0.2831 -4.6339 46 1 2.2288 -0.4537 -2.9008 47 1 1.3975 -3.9740 -3.2332 48 1 1.5222 -2.6274 -2.0758 49 1 3.8489 -3.9912 -3.5073 50 1 3.4253 -4.1699 -1.7872 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484872067.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:06 Heat of formation + Delta-G solvation = -32.753442 kcal Electronic energy + Delta-G solvation = -31922.665426 eV Core-core repulsion = 27950.624491 eV Total energy + Delta-G solvation = -3972.040935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -42.67243 -41.41167 -39.34594 -37.31384 -36.52128 -35.43173 -33.41908 -32.38855 -32.10634 -30.75555 -29.96802 -28.24726 -28.20752 -25.52275 -24.86500 -24.27243 -23.41912 -22.85926 -21.35765 -20.78406 -20.42851 -19.31284 -18.51876 -17.39423 -17.09425 -17.00470 -16.83661 -16.46392 -16.35554 -15.75568 -15.69171 -15.42698 -15.19452 -15.09779 -14.96333 -14.73543 -14.22123 -13.94514 -13.76769 -13.59160 -13.51378 -13.28818 -13.17484 -13.13012 -13.03842 -12.97343 -12.86240 -12.82279 -12.38809 -12.32221 -12.14597 -12.08580 -11.97953 -11.68021 -11.46688 -11.11691 -10.82708 -10.61004 -10.05775 -9.67901 -9.13652 -8.98211 -7.98637 -5.24898 0.52918 1.41908 1.43476 1.53131 1.76607 1.85199 2.01459 2.41786 2.52363 2.88592 3.33476 3.42102 3.50051 3.68158 3.73930 3.80412 3.87472 3.93564 3.95286 4.14959 4.19263 4.24681 4.38945 4.43709 4.51081 4.59238 4.64340 4.67647 4.71245 4.71600 4.78093 4.78890 4.79954 4.86636 4.97488 5.05537 5.07737 5.10797 5.13186 5.21618 5.24364 5.30728 5.43727 5.53264 5.82510 5.98033 6.16621 6.23812 6.36703 6.49466 7.16746 7.31257 8.04204 8.32435 9.24563 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009590 B = 0.005096 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.038203 B = 5493.284345 C = 6825.736655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.099 3.901 3 C -0.167 4.167 4 N -0.413 5.413 5 C 0.036 3.964 6 C -0.222 4.222 7 C -0.139 4.139 8 C -0.084 4.084 9 C 0.591 3.409 10 O -0.561 6.561 11 N -0.707 5.707 12 C 0.176 3.824 13 C 0.143 3.857 14 N -0.728 5.728 15 C -0.244 4.244 16 H 0.064 0.936 17 C -0.069 4.069 18 N -0.962 5.962 19 Si 0.970 3.030 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.295 1.295 23 C -0.150 4.150 24 C 0.065 3.935 25 O -0.384 6.384 26 C 0.074 3.926 27 C -0.159 4.159 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.039 0.961 35 H 0.207 0.793 36 H 0.162 0.838 37 H 0.125 0.875 38 H 0.401 0.599 39 H 0.016 0.984 40 H 0.026 0.974 41 H 0.375 0.625 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.088 0.912 45 H 0.122 0.878 46 H 0.056 0.944 47 H 0.113 0.887 48 H 0.045 0.955 49 H 0.086 0.914 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.121 1.819 -0.670 22.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.002 4.002 3 C -0.225 4.225 4 N -0.089 5.089 5 C -0.099 4.099 6 C -0.245 4.245 7 C -0.166 4.166 8 C -0.196 4.196 9 C 0.380 3.620 10 O -0.439 6.439 11 N -0.362 5.362 12 C 0.090 3.910 13 C 0.015 3.985 14 N -0.370 5.370 15 C -0.376 4.376 16 H 0.082 0.918 17 C -0.261 4.261 18 N -0.613 5.613 19 Si 0.799 3.201 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.222 1.222 23 C -0.188 4.188 24 C -0.011 4.011 25 O -0.303 6.303 26 C -0.003 4.003 27 C -0.198 4.198 28 H 0.102 0.898 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.224 0.776 36 H 0.180 0.820 37 H 0.143 0.857 38 H 0.241 0.759 39 H 0.034 0.966 40 H 0.044 0.956 41 H 0.208 0.792 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.140 0.860 46 H 0.074 0.926 47 H 0.131 0.869 48 H 0.064 0.936 49 H 0.105 0.895 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.825 1.052 -1.214 21.884 hybrid contribution 1.839 0.425 0.825 2.060 sum -19.986 1.477 -0.389 20.044 Atomic orbital electron populations 1.22145 0.90107 1.03375 1.05429 1.22121 0.98073 0.94329 0.85645 1.22295 1.01006 0.93580 1.05616 1.44506 1.31035 1.25540 1.07863 1.22462 1.03207 1.02578 0.81692 1.21094 1.02526 1.00457 1.00460 1.21412 1.01990 1.01916 0.91328 1.20382 1.03918 1.00000 0.95278 1.17305 0.78243 0.84725 0.81763 1.90737 1.48571 1.21267 1.83364 1.46273 1.64351 1.16097 1.09449 1.20555 0.92111 0.93952 0.84344 1.21142 0.90480 0.90214 0.96624 1.42227 1.04156 1.09346 1.81314 1.19579 0.85321 0.95893 1.36801 0.91771 1.25427 1.02094 0.95643 1.02946 1.69783 1.35795 1.01251 1.54490 0.85130 0.80700 0.77426 0.76846 1.19780 1.21348 1.22217 1.22426 0.99355 0.99744 0.97248 1.22746 0.88900 0.86732 1.02748 1.87916 1.74235 1.28332 1.39785 1.22504 0.94570 0.93505 0.89730 1.22486 0.97177 0.97125 1.03014 0.89763 0.92463 0.88099 0.89109 0.87636 0.89842 0.94188 0.77628 0.82011 0.85666 0.75940 0.96638 0.95624 0.79214 0.94029 0.90885 0.89352 0.86040 0.92598 0.86934 0.93634 0.89533 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.12 71.98 0.66 -1.04 16 2 C 0.10 1.77 2.80 44.99 0.13 1.90 16 3 C -0.17 -2.71 9.22 71.98 0.66 -2.05 16 4 N -0.41 -10.08 2.64 -488.68 -1.29 -11.37 16 5 C 0.04 0.74 10.39 83.48 0.87 1.61 16 6 C -0.22 -5.57 10.81 22.01 0.24 -5.33 16 7 C -0.14 -4.70 10.72 22.57 0.24 -4.45 16 8 C -0.08 -2.84 6.81 40.35 0.27 -2.57 16 9 C 0.59 22.82 7.04 86.45 0.61 23.43 16 10 O -0.56 -25.62 13.27 -4.34 -0.06 -25.68 16 11 N -0.71 -23.57 2.73 -426.28 -1.16 -24.73 16 12 C 0.18 5.98 0.32 3.73 0.00 5.99 16 13 C 0.14 6.44 4.90 86.38 0.42 6.87 16 14 N -0.73 -38.58 5.17 -343.46 -1.77 -40.35 16 15 C -0.24 -14.42 9.99 84.03 0.84 -13.58 16 16 H 0.06 3.77 7.83 -2.91 -0.02 3.75 16 17 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 18 N -0.96 -59.04 13.06 21.65 0.28 -58.76 16 19 Si 0.97 48.02 29.55 68.60 2.03 50.05 16 20 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 23 C -0.15 -4.32 4.81 30.75 0.15 -4.18 16 24 C 0.07 1.39 6.67 72.08 0.48 1.87 16 25 O -0.38 -9.00 10.77 -148.98 -1.60 -10.61 16 26 C 0.07 1.73 6.68 72.01 0.48 2.21 16 27 C -0.16 -4.73 4.73 30.69 0.15 -4.59 16 28 H 0.08 0.68 7.57 -2.39 -0.02 0.66 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.82 3.67 -2.39 -0.01 1.82 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.08 1.11 8.07 -2.38 -0.02 1.09 16 34 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 35 H 0.21 2.32 7.78 -2.91 -0.02 2.29 16 36 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.40 11.85 4.57 -92.71 -0.42 11.42 16 39 H 0.02 0.81 6.32 -2.39 -0.02 0.79 16 40 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.38 20.37 6.65 -92.71 -0.62 19.75 16 42 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 43 H 0.07 2.39 7.43 -2.39 -0.02 2.38 16 44 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 45 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.06 1.03 6.02 -2.39 -0.01 1.02 16 47 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.05 1.06 7.75 -2.39 -0.02 1.04 16 49 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 50 H 0.07 2.58 6.15 -2.39 -0.01 2.57 16 Total: -1.00 -77.29 386.54 3.00 -74.29 By element: Atomic # 1 Polarization: 44.73 SS G_CDS: -0.08 Total: 44.65 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 6.66 Total: 2.51 kcal Atomic # 7 Polarization: -131.26 SS G_CDS: -3.94 Total: -135.21 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -1.66 Total: -36.28 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 2.03 Total: 50.05 kcal Total: -77.29 3.00 -74.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484872067.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.533 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds