Wall clock time and date at job start Tue Mar 31 2020 18:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 O 1.42895 * 109.47000 * 295.00282 * 3 2 1 7 7 C 1.35691 * 116.99982 * 149.99763 * 6 3 2 8 8 C 1.38892 * 119.62322 * 179.97438 * 7 6 3 9 9 C 1.39576 * 118.94419 * 179.97438 * 8 7 6 10 10 C 1.48167 * 120.89291 * 179.97438 * 9 8 7 11 11 O 1.21510 * 119.99754 * 0.02562 * 10 9 8 12 12 N 1.34766 * 120.00164 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00183 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47450 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.47385 * 179.97438 * 14 13 12 16 16 H 1.09005 * 109.47436 * 305.00057 * 15 14 13 17 17 C 1.53004 * 109.47533 * 184.99786 * 15 14 13 18 18 N 1.46506 * 109.47398 * 64.99661 * 15 14 13 19 19 C 1.36928 * 120.00087 * 205.00038 * 18 15 14 20 20 H 1.07998 * 120.00419 * 0.02562 * 19 18 15 21 21 C 1.38821 * 119.99798 * 179.97438 * 19 18 15 22 22 N 1.31621 * 119.99748 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99831 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.46883 * 90.00254 * 23 21 19 25 25 H 1.48498 * 109.46652 * 209.99709 * 23 21 19 26 26 H 1.48490 * 109.47168 * 329.99706 * 23 21 19 27 27 C 1.39961 * 118.21856 * 359.97438 * 9 8 7 28 28 C 1.37976 * 119.13671 * 0.02562 * 27 9 8 29 29 N 1.31912 * 120.97390 * 359.73950 * 28 27 9 30 30 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 31 31 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 32 32 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 34 34 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 37 37 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 38 38 H 1.07996 * 120.52847 * 359.95485 * 8 7 6 39 39 H 0.97003 * 120.00255 * 359.97438 * 12 10 9 40 40 H 1.09004 * 109.46927 * 300.00194 * 13 12 10 41 41 H 1.08998 * 109.46988 * 59.99420 * 13 12 10 42 42 H 1.09004 * 109.47169 * 299.99991 * 14 13 12 43 43 H 1.08998 * 109.47543 * 59.99705 * 14 13 12 44 44 H 1.09001 * 109.47124 * 59.99782 * 17 15 14 45 45 H 1.08996 * 109.47128 * 179.97438 * 17 15 14 46 46 H 1.08996 * 109.47022 * 299.99915 * 17 15 14 47 47 H 0.97003 * 119.99360 * 25.00141 * 18 15 14 48 48 H 0.96998 * 119.99468 * 180.02562 * 22 21 19 49 49 H 1.07999 * 120.43487 * 179.97438 * 27 9 8 50 50 H 1.07998 * 119.51649 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.4504 3.4210 -1.1755 8 6 1.0813 4.0973 -2.3311 9 6 0.8668 5.4751 -2.2681 10 6 0.4724 6.2395 -3.4745 11 8 0.3309 5.6672 -4.5371 12 7 0.2704 7.5695 -3.3934 13 6 -0.1202 8.3253 -4.5861 14 6 -0.2831 9.8026 -4.2231 15 6 -0.6904 10.5919 -5.4688 16 1 0.0353 10.4170 -6.2632 17 6 -0.7321 12.0847 -5.1358 18 7 -2.0158 10.1535 -5.9132 19 6 -2.3822 10.3018 -7.2242 20 1 -1.6940 10.7416 -7.9308 21 6 -3.6379 9.8859 -7.6452 22 7 -3.9899 10.0281 -8.9055 23 14 -4.8280 9.1246 -6.4231 24 1 -5.6601 10.1920 -5.8120 25 1 -5.7055 8.1543 -7.1257 26 1 -4.0646 8.4225 -5.3605 27 6 1.0344 6.1152 -1.0348 28 6 1.4029 5.3682 0.0652 29 7 1.5927 4.0664 -0.0309 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9281 2.4721 0.1262 36 1 3.9994 0.9054 -0.7161 37 1 3.8532 0.9570 1.0571 38 1 0.9623 3.5657 -3.2636 39 1 0.3829 8.0263 -2.5451 40 1 0.6504 8.2220 -5.3501 41 1 -1.0648 7.9383 -4.9682 42 1 -1.0534 9.9062 -3.4589 43 1 0.6617 10.1893 -3.8412 44 1 0.2541 12.4109 -4.8053 45 1 -1.0218 12.6470 -6.0234 46 1 -1.4577 12.2596 -4.3416 47 1 -2.6338 9.7582 -5.2785 48 1 -4.8674 9.7378 -9.1996 49 1 0.8781 7.1801 -0.9454 50 1 1.5336 5.8558 1.0199 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485000958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:56 Heat of formation + Delta-G solvation = -63.999815 kcal Electronic energy + Delta-G solvation = -28159.942472 eV Core-core repulsion = 24186.546592 eV Total energy + Delta-G solvation = -3973.395880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.99521 -40.77083 -39.20709 -38.27864 -36.05513 -35.22912 -34.31012 -33.71922 -31.79264 -31.37846 -30.73150 -29.72770 -26.38595 -25.48936 -24.94559 -24.27756 -23.76586 -22.47245 -21.76465 -21.24804 -20.01231 -19.49218 -18.34995 -17.61179 -17.10722 -16.92218 -16.79803 -16.63211 -16.38488 -15.85826 -15.60249 -15.33677 -15.20399 -14.98138 -14.83548 -14.78197 -14.56340 -14.31206 -14.15817 -13.70495 -13.61255 -13.56000 -13.04644 -12.91521 -12.89243 -12.71051 -12.60402 -12.29582 -12.24489 -12.08054 -12.06321 -11.80408 -11.77710 -11.66548 -11.60694 -11.34674 -11.09884 -10.98798 -10.68236 -10.22366 -9.59412 -9.28665 -8.00950 -5.32335 -0.44783 0.06848 1.34843 1.39396 1.45568 1.71122 1.73043 2.15319 2.48361 2.73345 3.21977 3.31315 3.44273 3.64074 3.73931 3.85813 3.90744 3.94317 3.97169 4.04840 4.16240 4.17935 4.27758 4.40487 4.56102 4.60886 4.65499 4.65936 4.68717 4.76629 4.78089 4.84594 4.96310 4.98588 5.01755 5.02331 5.08423 5.09809 5.14765 5.19372 5.30765 5.33875 5.37657 5.39110 5.61145 5.81404 6.21843 6.23843 6.39488 6.71075 7.05216 7.11228 7.88716 8.05640 9.21061 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016650 B = 0.002111 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.306120 B =13262.561818 C =14250.740827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C 0.080 3.920 4 H 0.088 0.912 5 C -0.164 4.164 6 O -0.314 6.314 7 C 0.315 3.685 8 C -0.161 4.161 9 C -0.058 4.058 10 C 0.549 3.451 11 O -0.577 6.577 12 N -0.696 5.696 13 C 0.125 3.875 14 C -0.118 4.118 15 C 0.166 3.834 16 H 0.042 0.958 17 C -0.154 4.154 18 N -0.751 5.751 19 C -0.219 4.219 20 H 0.056 0.944 21 C -0.070 4.070 22 N -0.987 5.987 23 Si 0.952 3.048 24 H -0.275 1.275 25 H -0.303 1.303 26 H -0.255 1.255 27 C -0.167 4.167 28 C 0.146 3.854 29 N -0.531 5.531 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.421 0.579 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.027 0.973 46 H 0.055 0.945 47 H 0.364 0.636 48 H 0.255 0.745 49 H 0.181 0.819 50 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.356 -13.040 30.134 36.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C 0.024 3.976 4 H 0.106 0.894 5 C -0.222 4.222 6 O -0.221 6.221 7 C 0.137 3.863 8 C -0.183 4.183 9 C -0.069 4.069 10 C 0.335 3.665 11 O -0.457 6.457 12 N -0.349 5.349 13 C 0.001 3.999 14 C -0.156 4.156 15 C 0.059 3.941 16 H 0.060 0.940 17 C -0.214 4.214 18 N -0.395 5.395 19 C -0.351 4.351 20 H 0.074 0.926 21 C -0.261 4.261 22 N -0.638 5.638 23 Si 0.780 3.220 24 H -0.201 1.201 25 H -0.231 1.231 26 H -0.180 1.180 27 C -0.187 4.187 28 C -0.010 4.010 29 N -0.255 5.255 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.149 0.851 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.131 0.869 44 H 0.097 0.903 45 H 0.046 0.954 46 H 0.074 0.926 47 H 0.197 0.803 48 H 0.064 0.936 49 H 0.198 0.802 50 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 16.514 -14.041 29.672 36.746 hybrid contribution -1.366 0.111 -0.880 1.629 sum 15.148 -13.930 28.792 35.391 Atomic orbital electron populations 1.21758 0.95685 1.02364 1.01355 1.21736 0.96354 0.93367 1.04178 1.22675 0.96045 0.93697 0.85185 0.89361 1.22194 0.94025 1.02390 1.03574 1.86307 1.82350 1.15838 1.37639 1.19598 0.92179 0.85168 0.89335 1.21086 1.04492 0.93977 0.98781 1.20024 0.99473 0.93034 0.94355 1.18563 0.77161 0.82847 0.87889 1.90813 1.52735 1.70419 1.31737 1.45712 1.68574 1.06670 1.13967 1.21287 0.99509 0.92294 0.86812 1.21978 1.04271 0.91336 0.98059 1.20453 0.85662 0.93323 0.94710 0.94013 1.22241 1.01889 0.96696 1.00568 1.42857 1.15343 1.74833 1.06458 1.19027 0.98158 1.31582 0.86294 0.92554 1.25484 0.99828 1.03106 0.97667 1.69885 1.21596 1.55620 1.16701 0.85449 0.79238 0.78243 0.79067 1.20085 1.23084 1.17973 1.22539 1.01697 1.03504 0.90996 1.23163 0.90813 0.86871 1.00173 1.67252 1.19718 1.12971 1.25592 0.92504 0.94344 0.91235 0.91205 0.87529 0.93105 0.92209 0.88839 0.85138 0.74018 0.92634 0.93944 0.89618 0.86864 0.90281 0.95416 0.92556 0.80286 0.93620 0.80166 0.77306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.81 71.98 0.71 -1.39 16 2 C -0.12 -1.42 5.64 30.60 0.17 -1.25 16 3 C 0.08 1.22 2.49 30.60 0.08 1.30 16 4 H 0.09 1.38 6.97 -2.39 -0.02 1.36 16 5 C -0.16 -2.08 9.53 71.98 0.69 -1.39 16 6 O -0.31 -6.87 9.30 -90.10 -0.84 -7.71 16 7 C 0.32 7.00 7.45 84.80 0.63 7.63 16 8 C -0.16 -4.05 9.61 22.75 0.22 -3.83 16 9 C -0.06 -1.27 5.91 -19.90 -0.12 -1.39 16 10 C 0.55 15.44 7.80 86.88 0.68 16.12 16 11 O -0.58 -22.71 16.44 -3.75 -0.06 -22.77 16 12 N -0.70 -15.18 5.51 -465.68 -2.57 -17.75 16 13 C 0.12 3.58 5.56 86.38 0.48 4.06 16 14 C -0.12 -2.70 4.87 30.59 0.15 -2.55 16 15 C 0.17 5.59 2.89 44.99 0.13 5.72 16 16 H 0.04 1.54 8.08 -2.38 -0.02 1.52 16 17 C -0.15 -4.53 9.49 71.98 0.68 -3.85 16 18 N -0.75 -33.49 4.38 -322.92 -1.41 -34.90 16 19 C -0.22 -12.46 10.41 84.04 0.87 -11.58 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 22 N -0.99 -64.77 13.97 21.65 0.30 -64.47 16 23 Si 0.95 46.77 27.74 68.60 1.90 48.67 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.30 -15.44 7.11 99.48 0.71 -14.74 16 26 H -0.25 -11.39 6.52 99.48 0.65 -10.74 16 27 C -0.17 -2.04 9.61 22.63 0.22 -1.82 16 28 C 0.15 1.63 11.17 84.62 0.94 2.58 16 29 N -0.53 -9.31 8.61 -309.13 -2.66 -11.97 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.69 7.82 -2.39 -0.02 0.67 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.13 3.76 7.74 -2.91 -0.02 3.73 16 39 H 0.42 5.03 6.61 -92.71 -0.61 4.41 16 40 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 41 H 0.04 1.58 7.75 -2.39 -0.02 1.56 16 42 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.36 15.67 5.66 -92.71 -0.52 15.15 16 48 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 49 H 0.18 0.70 6.53 -2.91 -0.02 0.68 16 50 H 0.21 0.47 8.06 -2.91 -0.02 0.45 16 Total: -1.00 -82.51 411.86 1.40 -81.11 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.26 Total: 25.18 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: 7.00 Total: 4.61 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -6.34 Total: -129.09 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.90 Total: -30.48 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.90 Total: 48.67 kcal Total: -82.51 1.40 -81.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485000958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.106 kcal (2) G-P(sol) polarization free energy of solvation -82.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds