Wall clock time and date at job start Tue Mar 31 2020 19:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 N 1.46502 * 109.46872 * 119.99889 * 2 1 3 5 5 C 1.46503 * 119.99825 * 294.87647 * 4 2 1 6 6 C 1.53004 * 109.47116 * 263.13041 * 5 4 2 7 7 N 1.46502 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.46502 * 119.99793 * 90.00506 * 7 6 5 9 9 C 1.36930 * 120.00341 * 269.99695 * 7 6 5 10 10 H 1.08007 * 119.99821 * 30.27565 * 9 7 6 11 11 C 1.38810 * 120.00444 * 210.27703 * 9 7 6 12 12 N 1.31624 * 119.99739 * 7.05871 * 11 9 7 13 13 Si 1.86794 * 120.00233 * 187.06403 * 11 9 7 14 14 H 1.48503 * 109.47605 * 89.99968 * 13 11 9 15 15 H 1.48499 * 109.47375 * 209.99671 * 13 11 9 16 16 H 1.48503 * 109.47102 * 329.99765 * 13 11 9 17 17 C 1.34775 * 119.99930 * 114.87990 * 4 2 1 18 18 O 1.21585 * 119.99797 * 3.71579 * 17 4 2 19 19 C 1.47512 * 120.00015 * 183.98276 * 17 4 2 20 20 O 1.35189 * 127.15035 * 354.62248 * 19 17 4 21 21 N 1.21481 * 111.55395 * 179.91232 * 20 19 17 22 22 C 1.29078 * 111.68177 * 359.90676 * 21 20 19 23 23 C 1.35240 * 127.15377 * 174.30205 * 19 17 4 24 24 C 1.50109 * 131.33977 * 0.41009 * 23 19 17 25 25 C 1.53567 * 108.01687 * 163.70969 * 24 23 19 26 26 C 1.53007 * 109.80610 * 50.04629 * 25 24 23 27 27 C 1.50647 * 130.33643 * 180.41893 * 22 21 20 28 28 H 1.09002 * 109.46840 * 300.00316 * 1 2 3 29 29 H 1.09002 * 109.47062 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47356 * 239.99791 * 2 1 3 32 32 H 1.09001 * 109.47325 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47129 * 299.99873 * 3 2 1 34 34 H 1.09002 * 109.47222 * 59.99709 * 3 2 1 35 35 H 1.08996 * 109.47283 * 23.13178 * 5 4 2 36 36 H 1.09001 * 109.46706 * 143.13433 * 5 4 2 37 37 H 1.08996 * 109.47156 * 300.00215 * 6 5 4 38 38 H 1.09001 * 109.47013 * 60.00580 * 6 5 4 39 39 H 1.09003 * 109.47175 * 94.39771 * 8 7 6 40 40 H 1.08990 * 109.47052 * 214.39879 * 8 7 6 41 41 H 1.09003 * 109.46848 * 334.40329 * 8 7 6 42 42 H 0.96997 * 119.99808 * 180.02562 * 12 11 9 43 43 H 1.08999 * 109.74977 * 283.34421 * 24 23 19 44 44 H 1.09001 * 109.74907 * 44.02624 * 24 23 19 45 45 H 1.08999 * 109.41656 * 170.14746 * 25 24 23 46 46 H 1.09003 * 109.41882 * 289.93891 * 25 24 23 47 47 H 1.08995 * 109.37661 * 48.42542 * 26 25 24 48 48 H 1.08993 * 109.38156 * 168.20860 * 26 25 24 49 49 H 1.09004 * 109.73556 * 282.81845 * 27 22 21 50 50 H 1.09001 * 109.73952 * 43.52080 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7593 -0.1280 2.5239 6 6 2.9781 0.6740 2.9846 7 7 2.7187 1.2371 4.3120 8 6 3.0724 0.4756 5.5126 9 6 2.1458 2.4751 4.4306 10 1 1.4619 2.8285 3.6730 11 6 2.4439 3.2760 5.5244 12 7 3.3793 2.9079 6.3741 13 14 1.5177 4.8762 5.7905 14 1 0.3137 4.6191 6.6211 15 1 2.3992 5.8489 6.4846 16 1 1.1036 5.4327 4.4775 17 6 2.7059 -1.8434 1.0753 18 8 2.9795 -2.2752 -0.0279 19 6 3.1214 -2.5844 2.2812 20 8 2.9806 -2.1944 3.5680 21 7 3.4210 -3.0255 4.3369 22 6 3.8982 -4.0487 3.7112 23 6 3.7169 -3.7977 2.3297 24 6 4.1385 -4.7395 1.2395 25 6 5.1154 -5.7588 1.8438 26 6 4.5175 -6.3568 3.1190 27 6 4.5303 -5.3087 4.2423 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.8895 0.5274 2.4774 36 1 1.5680 -0.9361 3.2299 37 1 3.8478 0.0187 3.0311 38 1 3.1693 1.4821 2.2786 39 1 4.0629 0.7759 5.8546 40 1 2.3418 0.6736 6.2967 41 1 3.0759 -0.5892 5.2795 42 1 3.5874 3.4674 7.1387 43 1 3.2655 -5.2569 0.8418 44 1 4.6316 -4.1832 0.4424 45 1 5.3006 -6.5548 1.1226 46 1 6.0556 -5.2619 2.0828 47 1 3.4925 -6.6720 2.9245 48 1 5.1092 -7.2192 3.4259 49 1 5.5544 -5.1036 4.5542 50 1 3.9543 -5.6807 5.0896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507816365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:21 Heat of formation + Delta-G solvation = 41.696915 kcal Electronic energy + Delta-G solvation = -31117.264322 eV Core-core repulsion = 27148.451797 eV Total energy + Delta-G solvation = -3968.812526 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.82686 -39.92267 -37.89995 -36.73763 -35.24056 -33.23270 -32.39064 -32.12191 -31.12699 -29.68831 -28.14334 -27.06966 -25.75016 -25.27662 -23.80732 -23.51085 -23.18508 -20.73867 -20.61511 -20.07329 -19.02493 -17.57123 -17.28840 -16.74549 -16.40361 -15.88358 -15.18733 -15.06614 -14.69857 -14.51447 -14.12303 -14.02398 -13.85914 -13.62724 -13.34453 -13.09591 -13.01094 -12.77138 -12.66194 -12.57044 -12.18526 -12.00894 -11.94377 -11.71389 -11.50589 -11.18645 -11.15270 -11.05137 -10.87320 -10.83593 -10.69937 -10.62595 -10.49966 -10.16155 -10.06582 -9.89958 -9.88316 -9.63883 -9.40904 -8.71846 -8.42527 -6.60641 -5.68955 -3.24882 0.96832 2.16597 2.70583 3.09295 3.28945 3.38116 3.44424 3.45513 3.89855 4.32979 4.51426 4.60088 4.65308 4.75120 4.88151 5.01605 5.10684 5.16206 5.26365 5.30147 5.33040 5.41186 5.45515 5.49642 5.57906 5.65202 5.67332 5.70837 5.76859 5.80342 5.82290 5.89809 5.94076 5.98918 6.05842 6.07318 6.13913 6.20901 6.30980 6.37865 6.46898 6.76396 6.89313 7.00837 7.40786 7.46092 7.81974 7.85578 8.01647 8.30665 8.46792 9.27437 9.88426 10.42005 11.33891 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.004052 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.246321 B = 6908.703338 C = 8805.793542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 C -0.164 4.164 4 N -0.585 5.585 5 C 0.074 3.926 6 C 0.142 3.858 7 N -0.593 5.593 8 C 0.158 3.842 9 C -0.261 4.261 10 H 0.064 0.936 11 C 0.010 3.990 12 N -0.902 5.902 13 Si 0.902 3.098 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.279 1.279 17 C 0.604 3.396 18 O -0.529 6.529 19 C -0.077 4.077 20 O 0.124 5.876 21 N -0.329 5.329 22 C 0.007 3.993 23 C -0.129 4.129 24 C -0.046 4.046 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.039 4.039 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.028 0.972 40 H 0.034 0.966 41 H 0.012 0.988 42 H 0.252 0.748 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.405 -16.014 -10.999 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.031 3.969 3 C -0.222 4.222 4 N -0.316 5.316 5 C -0.050 4.050 6 C 0.014 3.986 7 N -0.316 5.316 8 C 0.014 3.986 9 C -0.391 4.391 10 H 0.082 0.918 11 C -0.189 4.189 12 N -0.546 5.546 13 Si 0.732 3.268 14 H -0.215 1.215 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.390 3.610 18 O -0.407 6.407 19 C -0.141 4.141 20 O 0.053 5.947 21 N -0.030 5.030 22 C -0.154 4.154 23 C -0.134 4.134 24 C -0.083 4.083 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.077 4.077 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.107 0.893 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.306 -15.791 -10.106 18.751 hybrid contribution -0.402 0.785 -0.117 0.890 sum -0.709 -15.006 -10.224 18.171 Atomic orbital electron populations 1.22162 0.94865 1.02197 1.02734 1.21126 0.94121 0.93635 0.87993 1.22226 1.01968 0.94990 1.02982 1.48120 1.52780 1.21708 1.09020 1.22974 1.02718 0.98983 0.80362 1.21116 0.92876 0.95642 0.89010 1.43733 1.71922 1.16817 0.99098 1.20852 0.99585 0.90069 0.88108 1.19102 1.19846 0.92081 1.08051 0.91791 1.25211 0.97031 0.97655 0.99044 1.70042 1.31427 1.38073 1.15018 0.86303 0.79010 0.83560 0.77898 1.21456 1.21717 1.20418 1.16606 0.78422 0.80638 0.85366 1.90781 1.56899 1.68595 1.24455 1.23371 1.06928 0.96860 0.86928 1.85632 1.59674 1.37074 1.12313 1.73501 1.11392 1.00208 1.17914 1.23351 1.03314 0.97822 0.90872 1.21030 1.01026 0.95141 0.96169 1.20059 0.99527 0.94348 0.94367 1.21672 0.98764 0.98384 0.97058 1.21642 1.02016 0.97420 0.94466 1.20124 1.00620 0.88545 0.98425 0.91717 0.91390 0.92548 0.88323 0.92007 0.91631 0.90909 0.89561 0.90246 0.95013 0.92840 0.95320 0.94698 0.96996 0.93735 0.89858 0.89044 0.90848 0.91397 0.91332 0.90651 0.89347 0.89640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.26 37.16 0.34 -1.48 16 2 C 0.13 1.76 3.22 -67.93 -0.22 1.54 16 3 C -0.16 -2.10 8.08 37.16 0.30 -1.80 16 4 N -0.58 -9.01 2.39 -167.33 -0.40 -9.41 16 5 C 0.07 1.29 4.44 -4.04 -0.02 1.27 16 6 C 0.14 2.94 5.30 -4.04 -0.02 2.92 16 7 N -0.59 -14.79 2.90 -181.12 -0.53 -15.32 16 8 C 0.16 4.00 8.99 59.85 0.54 4.54 16 9 C -0.26 -7.01 9.59 -15.06 -0.14 -7.15 16 10 H 0.06 1.65 7.84 -52.48 -0.41 1.24 16 11 C 0.01 0.27 5.21 -17.43 -0.09 0.18 16 12 N -0.90 -26.44 10.86 55.49 0.60 -25.84 16 13 Si 0.90 21.60 29.56 -169.99 -5.02 16.57 16 14 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 17 C 0.60 9.86 7.61 -12.48 -0.10 9.76 16 18 O -0.53 -9.06 15.23 5.29 0.08 -8.98 16 19 C -0.08 -1.25 6.62 -36.87 -0.24 -1.50 16 20 O 0.12 2.20 5.50 13.82 0.08 2.27 16 21 N -0.33 -5.68 11.84 33.15 0.39 -5.29 16 22 C 0.01 0.10 7.21 -82.50 -0.60 -0.50 16 23 C -0.13 -1.84 6.02 -104.70 -0.63 -2.47 16 24 C -0.05 -0.51 5.63 -27.87 -0.16 -0.67 16 25 C -0.12 -1.02 5.87 -26.43 -0.16 -1.18 16 26 C -0.12 -0.93 5.85 -26.40 -0.15 -1.08 16 27 C -0.04 -0.40 6.32 -27.58 -0.17 -0.57 16 28 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 1.31 6.91 -51.93 -0.36 0.95 16 32 H 0.06 0.85 7.99 -51.93 -0.41 0.43 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.05 6.67 -51.93 -0.35 0.71 16 35 H 0.09 1.49 6.48 -51.93 -0.34 1.15 16 36 H 0.08 1.45 5.44 -51.93 -0.28 1.16 16 37 H 0.03 0.67 7.02 -51.93 -0.36 0.31 16 38 H 0.05 1.11 6.12 -51.93 -0.32 0.79 16 39 H 0.03 0.79 7.25 -51.93 -0.38 0.42 16 40 H 0.03 0.93 7.62 -51.93 -0.40 0.54 16 41 H 0.01 0.26 6.29 -51.93 -0.33 -0.06 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.09 7.69 -51.93 -0.40 0.69 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.07 0.55 8.10 -51.93 -0.42 0.12 16 48 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -31.14 384.74 -8.57 -39.71 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.05 Total: -1.33 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: -1.52 Total: 1.81 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.07 Total: -55.85 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.16 Total: -6.71 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.14 -8.57 -39.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507816365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.404 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds