Wall clock time and date at job start Tue Mar 31 2020 19:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 N 1.46502 * 109.46872 * 119.99889 * 2 1 3 5 5 C 1.46503 * 119.99825 * 294.87647 * 4 2 1 6 6 C 1.53004 * 109.47116 * 263.13041 * 5 4 2 7 7 N 1.46502 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.46502 * 119.99793 * 90.00506 * 7 6 5 9 9 C 1.36930 * 120.00341 * 269.99695 * 7 6 5 10 10 H 1.08007 * 119.99821 * 30.27565 * 9 7 6 11 11 C 1.38810 * 120.00444 * 210.27703 * 9 7 6 12 12 N 1.31624 * 119.99739 * 7.05871 * 11 9 7 13 13 Si 1.86794 * 120.00233 * 187.06403 * 11 9 7 14 14 H 1.48503 * 109.47605 * 89.99968 * 13 11 9 15 15 H 1.48499 * 109.47375 * 209.99671 * 13 11 9 16 16 H 1.48503 * 109.47102 * 329.99765 * 13 11 9 17 17 C 1.34775 * 119.99930 * 114.87990 * 4 2 1 18 18 O 1.21585 * 119.99797 * 3.71579 * 17 4 2 19 19 C 1.47512 * 120.00015 * 183.98276 * 17 4 2 20 20 O 1.35189 * 127.15035 * 354.62248 * 19 17 4 21 21 N 1.21481 * 111.55395 * 179.91232 * 20 19 17 22 22 C 1.29078 * 111.68177 * 359.90676 * 21 20 19 23 23 C 1.35240 * 127.15377 * 174.30205 * 19 17 4 24 24 C 1.50109 * 131.33977 * 0.41009 * 23 19 17 25 25 C 1.53567 * 108.01687 * 163.70969 * 24 23 19 26 26 C 1.53007 * 109.80610 * 50.04629 * 25 24 23 27 27 C 1.50647 * 130.33643 * 180.41893 * 22 21 20 28 28 H 1.09002 * 109.46840 * 300.00316 * 1 2 3 29 29 H 1.09002 * 109.47062 * 60.00086 * 1 2 3 30 30 H 1.09000 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47356 * 239.99791 * 2 1 3 32 32 H 1.09001 * 109.47325 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47129 * 299.99873 * 3 2 1 34 34 H 1.09002 * 109.47222 * 59.99709 * 3 2 1 35 35 H 1.08996 * 109.47283 * 23.13178 * 5 4 2 36 36 H 1.09001 * 109.46706 * 143.13433 * 5 4 2 37 37 H 1.08996 * 109.47156 * 300.00215 * 6 5 4 38 38 H 1.09001 * 109.47013 * 60.00580 * 6 5 4 39 39 H 1.09003 * 109.47175 * 94.39771 * 8 7 6 40 40 H 1.08990 * 109.47052 * 214.39879 * 8 7 6 41 41 H 1.09003 * 109.46848 * 334.40329 * 8 7 6 42 42 H 0.96997 * 119.99808 * 180.02562 * 12 11 9 43 43 H 1.08999 * 109.74977 * 283.34421 * 24 23 19 44 44 H 1.09001 * 109.74907 * 44.02624 * 24 23 19 45 45 H 1.08999 * 109.41656 * 170.14746 * 25 24 23 46 46 H 1.09003 * 109.41882 * 289.93891 * 25 24 23 47 47 H 1.08995 * 109.37661 * 48.42542 * 26 25 24 48 48 H 1.08993 * 109.38156 * 168.20860 * 26 25 24 49 49 H 1.09004 * 109.73556 * 282.81845 * 27 22 21 50 50 H 1.09001 * 109.73952 * 43.52080 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7593 -0.1280 2.5239 6 6 2.9781 0.6740 2.9846 7 7 2.7187 1.2371 4.3120 8 6 3.0724 0.4756 5.5126 9 6 2.1458 2.4751 4.4306 10 1 1.4619 2.8285 3.6730 11 6 2.4439 3.2760 5.5244 12 7 3.3793 2.9079 6.3741 13 14 1.5177 4.8762 5.7905 14 1 0.3137 4.6191 6.6211 15 1 2.3992 5.8489 6.4846 16 1 1.1036 5.4327 4.4775 17 6 2.7059 -1.8434 1.0753 18 8 2.9795 -2.2752 -0.0279 19 6 3.1214 -2.5844 2.2812 20 8 2.9806 -2.1944 3.5680 21 7 3.4210 -3.0255 4.3369 22 6 3.8982 -4.0487 3.7112 23 6 3.7169 -3.7977 2.3297 24 6 4.1385 -4.7395 1.2395 25 6 5.1154 -5.7588 1.8438 26 6 4.5175 -6.3568 3.1190 27 6 4.5303 -5.3087 4.2423 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.8895 0.5274 2.4774 36 1 1.5680 -0.9361 3.2299 37 1 3.8478 0.0187 3.0311 38 1 3.1693 1.4821 2.2786 39 1 4.0629 0.7759 5.8546 40 1 2.3418 0.6736 6.2967 41 1 3.0759 -0.5892 5.2795 42 1 3.5874 3.4674 7.1387 43 1 3.2655 -5.2569 0.8418 44 1 4.6316 -4.1832 0.4424 45 1 5.3006 -6.5548 1.1226 46 1 6.0556 -5.2619 2.0828 47 1 3.4925 -6.6720 2.9245 48 1 5.1092 -7.2192 3.4259 49 1 5.5544 -5.1036 4.5542 50 1 3.9543 -5.6807 5.0896 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507816365.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:20 Heat of formation + Delta-G solvation = 24.890881 kcal Electronic energy + Delta-G solvation = -31117.993087 eV Core-core repulsion = 27148.451797 eV Total energy + Delta-G solvation = -3969.541290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.01681 -41.20919 -38.86397 -38.11227 -36.97084 -34.47870 -33.57539 -33.34410 -32.77194 -30.68842 -29.81176 -28.07217 -27.84481 -26.27881 -25.35732 -24.76357 -24.18789 -22.49029 -21.84202 -20.94452 -20.22036 -18.82137 -18.66917 -18.51644 -17.78728 -17.13860 -16.75648 -16.24082 -15.96044 -15.67209 -15.45813 -15.15501 -15.03962 -14.87833 -14.71663 -14.45854 -14.32450 -14.06472 -13.99900 -13.54033 -13.39957 -13.30393 -13.12761 -12.90896 -12.79960 -12.75636 -12.71307 -12.45185 -12.21004 -12.10485 -11.93006 -11.90343 -11.87682 -11.72326 -11.63744 -11.46202 -11.24712 -10.91447 -10.67507 -10.56268 -9.91655 -8.65780 -7.79450 -5.38804 -0.26923 1.03920 1.47709 1.49288 1.49670 1.58255 1.82021 2.04074 2.52986 2.91041 3.18991 3.34381 3.60422 3.80813 3.84104 3.90009 3.96744 3.99093 4.04120 4.12704 4.31131 4.32594 4.39385 4.43520 4.47794 4.53975 4.61973 4.65178 4.77342 4.83371 4.86395 4.91307 4.94795 4.98315 4.99701 5.00988 5.12544 5.14213 5.17058 5.29112 5.30440 5.34472 5.40681 5.42013 5.48238 5.68034 5.69085 6.09893 6.37436 6.74084 7.08811 7.16913 7.84597 8.35276 9.22584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012325 B = 0.004052 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.246321 B = 6908.703338 C = 8805.793542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 C -0.158 4.158 4 N -0.583 5.583 5 C 0.098 3.902 6 C 0.150 3.850 7 N -0.608 5.608 8 C 0.180 3.820 9 C -0.264 4.264 10 H 0.076 0.924 11 C -0.048 4.048 12 N -0.939 5.939 13 Si 0.969 3.031 14 H -0.286 1.286 15 H -0.298 1.298 16 H -0.262 1.262 17 C 0.604 3.396 18 O -0.538 6.538 19 C -0.103 4.103 20 O 0.095 5.905 21 N -0.363 5.363 22 C 0.014 3.986 23 C -0.123 4.123 24 C -0.047 4.047 25 C -0.117 4.117 26 C -0.112 4.112 27 C -0.044 4.044 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.022 0.978 38 H 0.053 0.947 39 H -0.003 1.003 40 H 0.010 0.990 41 H 0.033 0.967 42 H 0.247 0.753 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.105 0.895 49 H 0.099 0.901 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.045 -17.353 -12.762 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.314 5.314 5 C -0.027 4.027 6 C 0.023 3.977 7 N -0.331 5.331 8 C 0.035 3.965 9 C -0.394 4.394 10 H 0.094 0.906 11 C -0.243 4.243 12 N -0.585 5.585 13 Si 0.797 3.203 14 H -0.213 1.213 15 H -0.225 1.225 16 H -0.187 1.187 17 C 0.390 3.610 18 O -0.418 6.418 19 C -0.167 4.167 20 O 0.029 5.971 21 N -0.068 5.068 22 C -0.147 4.147 23 C -0.128 4.128 24 C -0.085 4.085 25 C -0.155 4.155 26 C -0.149 4.149 27 C -0.081 4.081 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.015 0.985 40 H 0.029 0.971 41 H 0.051 0.949 42 H 0.056 0.944 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.083 0.917 47 H 0.088 0.912 48 H 0.123 0.877 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.978 -17.119 -11.943 20.896 hybrid contribution -0.143 1.094 0.351 1.158 sum -1.121 -16.024 -11.592 19.809 Atomic orbital electron populations 1.22121 0.93091 1.02433 1.03640 1.21357 0.95503 0.93453 0.86888 1.22183 1.01080 0.94848 1.03512 1.48125 1.52710 1.21614 1.08933 1.22426 1.00757 0.98257 0.81302 1.21134 0.94024 0.95532 0.87041 1.43910 1.72092 1.16765 1.00341 1.20506 0.96955 0.91182 0.87900 1.19505 1.19518 0.92436 1.07970 0.90642 1.26015 0.98144 1.01028 0.99132 1.70231 1.33357 1.39309 1.15571 0.85246 0.77415 0.79425 0.78217 1.21270 1.22462 1.18671 1.16667 0.78213 0.80771 0.85329 1.90763 1.57341 1.68913 1.24733 1.23595 1.08375 0.98046 0.86684 1.85567 1.60861 1.37863 1.12802 1.73479 1.13192 1.01427 1.18745 1.24102 1.01546 0.98103 0.90910 1.21551 0.99330 0.94687 0.97184 1.20226 1.00546 0.94386 0.93294 1.21695 0.97627 0.98245 0.97884 1.21665 1.02734 0.97376 0.93148 1.20429 1.00818 0.87201 0.99689 0.92417 0.88828 0.92654 0.88121 0.93338 0.88784 0.92612 0.89078 0.90972 0.95992 0.92917 0.98466 0.97080 0.94892 0.94361 0.88873 0.89954 0.88190 0.91681 0.91172 0.87655 0.88314 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 9.26 71.98 0.67 -2.53 16 2 C 0.13 3.23 3.22 44.99 0.15 3.38 16 3 C -0.16 -3.87 8.08 71.98 0.58 -3.28 16 4 N -0.58 -17.83 2.39 -801.57 -1.91 -19.74 16 5 C 0.10 3.41 4.44 86.38 0.38 3.80 16 6 C 0.15 6.32 5.30 86.38 0.46 6.78 16 7 N -0.61 -31.04 2.90 -726.93 -2.11 -33.15 16 8 C 0.18 9.47 8.99 127.77 1.15 10.62 16 9 C -0.26 -14.30 9.59 84.03 0.81 -13.49 16 10 H 0.08 3.84 7.84 -2.91 -0.02 3.82 16 11 C -0.05 -2.68 5.21 84.86 0.44 -2.23 16 12 N -0.94 -56.73 10.86 21.65 0.24 -56.49 16 13 Si 0.97 44.72 29.56 68.60 2.03 46.74 16 14 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 15 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 16 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 17 C 0.60 19.72 7.61 86.69 0.66 20.38 16 18 O -0.54 -18.19 15.23 -3.99 -0.06 -18.25 16 19 C -0.10 -3.42 6.62 24.03 0.16 -3.26 16 20 O 0.10 3.48 5.50 59.46 0.33 3.81 16 21 N -0.36 -12.77 11.84 -50.83 -0.60 -13.37 16 22 C 0.01 0.40 7.21 43.77 0.32 0.72 16 23 C -0.12 -3.44 6.02 -19.92 -0.12 -3.56 16 24 C -0.05 -0.98 5.63 29.85 0.17 -0.81 16 25 C -0.12 -1.63 5.87 30.79 0.18 -1.45 16 26 C -0.11 -1.40 5.85 30.81 0.18 -1.22 16 27 C -0.04 -0.80 6.32 30.04 0.19 -0.61 16 28 H 0.06 1.28 6.92 -2.39 -0.02 1.26 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 2.53 6.91 -2.39 -0.02 2.51 16 32 H 0.05 1.30 7.99 -2.39 -0.02 1.28 16 33 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.05 1.56 6.67 -2.39 -0.02 1.54 16 35 H 0.09 3.11 6.48 -2.39 -0.02 3.09 16 36 H 0.07 2.69 5.44 -2.39 -0.01 2.68 16 37 H 0.02 0.96 7.02 -2.39 -0.02 0.94 16 38 H 0.05 2.21 6.12 -2.39 -0.01 2.20 16 39 H 0.00 -0.18 7.25 -2.39 -0.02 -0.19 16 40 H 0.01 0.59 7.62 -2.39 -0.02 0.57 16 41 H 0.03 1.56 6.29 -2.39 -0.02 1.55 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.08 1.88 7.69 -2.39 -0.02 1.86 16 45 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 47 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 48 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 50 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -69.05 384.74 5.21 -63.84 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.94 Total: 13.39 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.37 Total: 13.23 kcal Atomic # 7 Polarization: -118.37 SS G_CDS: -4.39 Total: -122.76 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.27 Total: -14.44 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -69.05 5.21 -63.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507816365.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.733 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds