Wall clock time and date at job start Tue Mar 31 2020 19:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46860 * 2 1 4 4 N 1.46501 * 109.47000 * 120.00084 * 2 1 3 5 5 C 1.46501 * 120.00138 * 294.55967 * 4 2 1 6 6 C 1.52998 * 109.47175 * 262.88581 * 5 4 2 7 7 N 1.46503 * 109.47262 * 179.97438 * 6 5 4 8 8 C 1.46507 * 119.99471 * 89.99993 * 7 6 5 9 9 C 1.36928 * 120.00473 * 270.00282 * 7 6 5 10 10 H 1.08000 * 120.00078 * 31.82405 * 9 7 6 11 11 C 1.38818 * 120.00114 * 211.82735 * 9 7 6 12 12 N 1.31611 * 119.99855 * 6.31362 * 11 9 7 13 13 Si 1.86796 * 119.99942 * 186.31408 * 11 9 7 14 14 H 1.48504 * 109.47608 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47352 * 120.00043 * 13 11 9 16 16 H 1.48501 * 109.47253 * 239.99942 * 13 11 9 17 17 C 1.34772 * 120.00270 * 114.55948 * 4 2 1 18 18 O 1.21497 * 119.99834 * 4.40145 * 17 4 2 19 19 C 1.48328 * 120.00503 * 184.39735 * 17 4 2 20 20 N 1.31497 * 127.15172 * 354.49496 * 19 17 4 21 21 O 1.21433 * 111.52651 * 179.97438 * 20 19 17 22 22 C 1.33188 * 111.56876 * 359.94687 * 21 20 19 23 23 C 1.35383 * 106.63510 * 0.08596 * 22 21 20 24 24 C 1.50062 * 124.93816 * 179.81130 * 23 22 21 25 25 C 1.53544 * 108.23268 * 343.96801 * 24 23 22 26 26 C 1.53106 * 109.51389 * 49.17491 * 25 24 23 27 27 C 1.50599 * 129.60434 * 180.22527 * 22 21 20 28 28 H 1.09007 * 109.47050 * 299.99818 * 1 2 3 29 29 H 1.08996 * 109.47244 * 60.00136 * 1 2 3 30 30 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47159 * 239.99964 * 2 1 3 32 32 H 1.09001 * 109.46740 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47081 * 299.99964 * 3 2 1 34 34 H 1.08998 * 109.46929 * 60.00372 * 3 2 1 35 35 H 1.09008 * 109.46891 * 22.88634 * 5 4 2 36 36 H 1.08997 * 109.47458 * 142.88433 * 5 4 2 37 37 H 1.08991 * 109.47199 * 300.00059 * 6 5 4 38 38 H 1.09000 * 109.47187 * 60.00123 * 6 5 4 39 39 H 1.08999 * 109.46860 * 94.63313 * 8 7 6 40 40 H 1.09001 * 109.46747 * 214.62887 * 8 7 6 41 41 H 1.08996 * 109.47257 * 334.63224 * 8 7 6 42 42 H 0.97000 * 119.99983 * 179.97438 * 12 11 9 43 43 H 1.09003 * 109.70840 * 103.65219 * 24 23 22 44 44 H 1.08998 * 109.71356 * 224.28582 * 24 23 22 45 45 H 1.08998 * 109.46694 * 289.16425 * 25 24 23 46 46 H 1.09008 * 109.46478 * 169.19111 * 25 24 23 47 47 H 1.09009 * 109.43088 * 170.05855 * 26 25 24 48 48 H 1.09007 * 109.38556 * 50.19111 * 26 25 24 49 49 H 1.08995 * 109.69401 * 282.88265 * 27 22 21 50 50 H 1.09004 * 109.69607 * 43.42886 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7654 -0.1245 2.5235 6 6 2.9913 0.6676 2.9822 7 7 2.7381 1.2343 4.3093 8 6 3.0866 0.4710 5.5103 9 6 2.1756 2.4771 4.4272 10 1 1.4746 2.8255 3.6831 11 6 2.5065 3.2895 5.5032 12 7 3.4510 2.9190 6.3414 13 14 1.6110 4.9084 5.7612 14 1 0.6013 5.0923 4.6879 15 1 0.9328 4.8939 7.0823 16 1 2.5874 6.0265 5.7184 17 6 2.7004 -1.8468 1.0756 18 8 2.9797 -2.2752 -0.0265 19 6 3.1100 -2.5963 2.2883 20 7 2.9727 -2.2176 3.5401 21 8 3.4065 -3.0521 4.3082 22 6 3.8939 -4.1083 3.6595 23 6 3.7268 -3.8629 2.3386 24 6 4.1396 -4.7901 1.2333 25 6 5.1138 -5.8254 1.8134 26 6 4.5228 -6.4229 3.0932 27 6 4.5189 -5.3654 4.2046 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.9010 0.5381 2.4771 36 1 1.5680 -0.9302 3.2306 37 1 3.8555 0.0051 3.0285 38 1 3.1886 1.4734 2.2752 39 1 4.0782 0.7662 5.8533 40 1 2.3561 0.6728 6.2937 41 1 3.0848 -0.5938 5.2773 42 1 3.6825 3.4868 7.0930 43 1 3.2619 -5.2961 0.8309 44 1 4.6326 -4.2238 0.4432 45 1 6.0633 -5.3420 2.0431 46 1 5.2775 -6.6188 1.0839 47 1 5.1246 -7.2761 3.4066 48 1 3.5012 -6.7509 2.9011 49 1 5.5418 -5.1600 4.5200 50 1 3.9382 -5.7260 5.0537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507841687.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:23 Heat of formation + Delta-G solvation = 48.883551 kcal Electronic energy + Delta-G solvation = -31029.562428 eV Core-core repulsion = 27061.061538 eV Total energy + Delta-G solvation = -3968.500890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.94296 -39.84772 -37.82891 -36.63740 -35.20742 -33.97695 -32.23101 -31.08737 -30.99517 -30.17930 -28.07044 -27.03101 -25.72137 -25.12499 -24.10722 -23.52478 -22.83556 -21.11035 -20.56359 -19.89351 -18.73276 -17.62348 -17.12335 -16.87235 -16.49319 -15.93087 -15.18474 -15.02787 -14.65027 -14.25472 -14.09690 -14.05605 -13.79350 -13.57524 -13.35623 -13.22647 -13.00414 -12.94478 -12.61153 -12.50873 -12.31125 -12.02053 -11.94570 -11.49326 -11.25322 -11.17595 -11.14567 -10.95467 -10.88934 -10.82476 -10.78594 -10.64992 -10.47965 -10.14398 -9.99617 -9.96005 -9.86219 -9.61592 -9.01452 -8.66591 -8.37867 -6.54443 -5.67147 -3.24000 1.31249 1.74104 2.89652 3.08859 3.33084 3.37957 3.44968 3.46637 4.07643 4.37823 4.52673 4.56503 4.59990 4.84210 4.88620 4.98520 5.08217 5.20545 5.26049 5.29699 5.34459 5.40520 5.47178 5.54709 5.56459 5.62331 5.71223 5.73275 5.75441 5.78510 5.88543 5.91412 5.93543 6.02664 6.04715 6.15805 6.19294 6.29035 6.39382 6.43336 6.54765 6.88818 6.97840 7.05158 7.45845 7.55441 7.84325 7.86453 8.11284 8.32852 8.50340 9.30400 9.91335 10.46449 11.35271 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.004005 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.903490 B = 6989.007637 C = 8883.228530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.133 3.867 3 C -0.162 4.162 4 N -0.584 5.584 5 C 0.075 3.925 6 C 0.148 3.852 7 N -0.592 5.592 8 C 0.158 3.842 9 C -0.259 4.259 10 H 0.062 0.938 11 C 0.010 3.990 12 N -0.901 5.901 13 Si 0.901 3.099 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.290 1.290 17 C 0.598 3.402 18 O -0.540 6.540 19 C -0.022 4.022 20 N -0.303 5.303 21 O 0.128 5.872 22 C -0.045 4.045 23 C -0.156 4.156 24 C -0.042 4.042 25 C -0.123 4.123 26 C -0.117 4.117 27 C -0.035 4.035 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.048 0.952 39 H 0.027 0.973 40 H 0.031 0.969 41 H 0.014 0.986 42 H 0.251 0.749 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.290 -17.983 -8.967 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.220 4.220 4 N -0.317 5.317 5 C -0.050 4.050 6 C 0.020 3.980 7 N -0.315 5.315 8 C 0.014 3.986 9 C -0.389 4.389 10 H 0.080 0.920 11 C -0.189 4.189 12 N -0.545 5.545 13 Si 0.731 3.269 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.217 1.217 17 C 0.385 3.615 18 O -0.417 6.417 19 C -0.179 4.179 20 N -0.004 5.004 21 O 0.054 5.946 22 C -0.109 4.109 23 C -0.161 4.161 24 C -0.079 4.079 25 C -0.161 4.161 26 C -0.155 4.155 27 C -0.073 4.073 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.049 0.951 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.106 0.894 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.112 0.888 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.034 -16.963 -8.849 19.132 hybrid contribution -0.301 0.686 -0.028 0.749 sum -0.335 -16.277 -8.877 18.543 Atomic orbital electron populations 1.22151 0.95017 1.02073 1.02606 1.21092 0.94013 0.93591 0.88252 1.22208 1.01884 0.95085 1.02850 1.48082 1.53200 1.21488 1.08887 1.22990 1.02093 0.99195 0.80677 1.21028 0.93083 0.95185 0.88741 1.43689 1.72507 1.16176 0.99148 1.20843 0.99367 0.90383 0.88032 1.19130 1.18864 0.91519 1.09416 0.91998 1.25242 0.96920 0.97580 0.99178 1.70037 1.30863 1.37437 1.16196 0.86249 0.78968 0.84009 0.77688 1.20280 1.21628 1.21656 1.16925 0.78094 0.80465 0.86065 1.90710 1.56449 1.68912 1.25655 1.22944 1.05847 0.96172 0.92956 1.75034 1.13677 1.10532 1.01206 1.84800 1.54737 1.21251 1.33765 1.24079 1.02410 0.93034 0.91371 1.20565 1.04339 0.95668 0.95556 1.19949 0.99298 0.94211 0.94484 1.21717 0.98910 0.98396 0.97067 1.21637 1.02320 0.97140 0.94395 1.20226 1.00802 0.87307 0.98955 0.91843 0.91453 0.92655 0.88472 0.92114 0.91708 0.91019 0.90416 0.89255 0.95116 0.93417 0.95440 0.95061 0.96701 0.93828 0.90296 0.89364 0.91337 0.90841 0.90243 0.91156 0.88800 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.26 37.16 0.34 -1.66 16 2 C 0.13 1.93 3.22 -67.93 -0.22 1.71 16 3 C -0.16 -2.29 8.08 37.16 0.30 -1.99 16 4 N -0.58 -9.88 2.39 -167.03 -0.40 -10.28 16 5 C 0.08 1.41 4.44 -4.04 -0.02 1.39 16 6 C 0.15 3.25 5.29 -4.04 -0.02 3.23 16 7 N -0.59 -15.25 2.90 -181.12 -0.52 -15.77 16 8 C 0.16 4.04 9.01 59.85 0.54 4.58 16 9 C -0.26 -7.17 9.58 -15.06 -0.14 -7.31 16 10 H 0.06 1.67 7.84 -52.49 -0.41 1.26 16 11 C 0.01 0.28 5.23 -17.43 -0.09 0.19 16 12 N -0.90 -26.72 10.92 55.49 0.61 -26.11 16 13 Si 0.90 21.93 29.56 -169.99 -5.02 16.91 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 C 0.60 10.60 7.64 -12.11 -0.09 10.51 16 18 O -0.54 -10.03 15.39 5.37 0.08 -9.95 16 19 C -0.02 -0.37 6.64 -82.82 -0.55 -0.92 16 20 N -0.30 -5.33 6.09 33.29 0.20 -5.13 16 21 O 0.13 1.99 11.12 19.19 0.21 2.20 16 22 C -0.04 -0.56 7.38 -35.38 -0.26 -0.82 16 23 C -0.16 -2.17 6.04 -104.91 -0.63 -2.81 16 24 C -0.04 -0.47 5.70 -27.91 -0.16 -0.63 16 25 C -0.12 -0.97 5.92 -26.39 -0.16 -1.12 16 26 C -0.12 -0.77 5.88 -26.46 -0.16 -0.93 16 27 C -0.03 -0.28 6.31 -27.71 -0.17 -0.45 16 28 H 0.06 0.84 6.94 -51.92 -0.36 0.48 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 1.43 6.91 -51.93 -0.36 1.07 16 32 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.14 6.68 -51.93 -0.35 0.79 16 35 H 0.08 1.48 6.48 -51.92 -0.34 1.14 16 36 H 0.09 1.77 5.40 -51.93 -0.28 1.49 16 37 H 0.03 0.69 6.99 -51.93 -0.36 0.33 16 38 H 0.05 1.06 6.15 -51.93 -0.32 0.74 16 39 H 0.03 0.77 7.22 -51.93 -0.37 0.39 16 40 H 0.03 0.84 7.72 -51.93 -0.40 0.44 16 41 H 0.01 0.33 6.39 -51.93 -0.33 0.00 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 1.10 7.76 -51.93 -0.40 0.70 16 45 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 46 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 47 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 48 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 49 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -32.28 385.42 -8.59 -40.87 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.06 Total: -1.52 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.49 Total: 2.97 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: -0.11 Total: -57.29 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.30 Total: -7.74 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.28 -8.59 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507841687.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.752 kcal (2) G-P(sol) polarization free energy of solvation -32.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds