Wall clock time and date at job start Tue Mar 31 2020 19:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46860 * 2 1 4 4 N 1.46501 * 109.47000 * 120.00084 * 2 1 3 5 5 C 1.46501 * 120.00138 * 294.55967 * 4 2 1 6 6 C 1.52998 * 109.47175 * 262.88581 * 5 4 2 7 7 N 1.46503 * 109.47262 * 179.97438 * 6 5 4 8 8 C 1.46507 * 119.99471 * 89.99993 * 7 6 5 9 9 C 1.36928 * 120.00473 * 270.00282 * 7 6 5 10 10 H 1.08000 * 120.00078 * 31.82405 * 9 7 6 11 11 C 1.38818 * 120.00114 * 211.82735 * 9 7 6 12 12 N 1.31611 * 119.99855 * 6.31362 * 11 9 7 13 13 Si 1.86796 * 119.99942 * 186.31408 * 11 9 7 14 14 H 1.48504 * 109.47608 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.47352 * 120.00043 * 13 11 9 16 16 H 1.48501 * 109.47253 * 239.99942 * 13 11 9 17 17 C 1.34772 * 120.00270 * 114.55948 * 4 2 1 18 18 O 1.21497 * 119.99834 * 4.40145 * 17 4 2 19 19 C 1.48328 * 120.00503 * 184.39735 * 17 4 2 20 20 N 1.31497 * 127.15172 * 354.49496 * 19 17 4 21 21 O 1.21433 * 111.52651 * 179.97438 * 20 19 17 22 22 C 1.33188 * 111.56876 * 359.94687 * 21 20 19 23 23 C 1.35383 * 106.63510 * 0.08596 * 22 21 20 24 24 C 1.50062 * 124.93816 * 179.81130 * 23 22 21 25 25 C 1.53544 * 108.23268 * 343.96801 * 24 23 22 26 26 C 1.53106 * 109.51389 * 49.17491 * 25 24 23 27 27 C 1.50599 * 129.60434 * 180.22527 * 22 21 20 28 28 H 1.09007 * 109.47050 * 299.99818 * 1 2 3 29 29 H 1.08996 * 109.47244 * 60.00136 * 1 2 3 30 30 H 1.09003 * 109.46989 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47159 * 239.99964 * 2 1 3 32 32 H 1.09001 * 109.46740 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47081 * 299.99964 * 3 2 1 34 34 H 1.08998 * 109.46929 * 60.00372 * 3 2 1 35 35 H 1.09008 * 109.46891 * 22.88634 * 5 4 2 36 36 H 1.08997 * 109.47458 * 142.88433 * 5 4 2 37 37 H 1.08991 * 109.47199 * 300.00059 * 6 5 4 38 38 H 1.09000 * 109.47187 * 60.00123 * 6 5 4 39 39 H 1.08999 * 109.46860 * 94.63313 * 8 7 6 40 40 H 1.09001 * 109.46747 * 214.62887 * 8 7 6 41 41 H 1.08996 * 109.47257 * 334.63224 * 8 7 6 42 42 H 0.97000 * 119.99983 * 179.97438 * 12 11 9 43 43 H 1.09003 * 109.70840 * 103.65219 * 24 23 22 44 44 H 1.08998 * 109.71356 * 224.28582 * 24 23 22 45 45 H 1.08998 * 109.46694 * 289.16425 * 25 24 23 46 46 H 1.09008 * 109.46478 * 169.19111 * 25 24 23 47 47 H 1.09009 * 109.43088 * 170.05855 * 26 25 24 48 48 H 1.09007 * 109.38556 * 50.19111 * 26 25 24 49 49 H 1.08995 * 109.69401 * 282.88265 * 27 22 21 50 50 H 1.09004 * 109.69607 * 43.42886 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7654 -0.1245 2.5235 6 6 2.9913 0.6676 2.9822 7 7 2.7381 1.2343 4.3093 8 6 3.0866 0.4710 5.5103 9 6 2.1756 2.4771 4.4272 10 1 1.4746 2.8255 3.6831 11 6 2.5065 3.2895 5.5032 12 7 3.4510 2.9190 6.3414 13 14 1.6110 4.9084 5.7612 14 1 0.6013 5.0923 4.6879 15 1 0.9328 4.8939 7.0823 16 1 2.5874 6.0265 5.7184 17 6 2.7004 -1.8468 1.0756 18 8 2.9797 -2.2752 -0.0265 19 6 3.1100 -2.5963 2.2883 20 7 2.9727 -2.2176 3.5401 21 8 3.4065 -3.0521 4.3082 22 6 3.8939 -4.1083 3.6595 23 6 3.7268 -3.8629 2.3386 24 6 4.1396 -4.7901 1.2333 25 6 5.1138 -5.8254 1.8134 26 6 4.5228 -6.4229 3.0932 27 6 4.5189 -5.3654 4.2046 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 0.9010 0.5381 2.4771 36 1 1.5680 -0.9302 3.2306 37 1 3.8555 0.0051 3.0285 38 1 3.1886 1.4734 2.2752 39 1 4.0782 0.7662 5.8533 40 1 2.3561 0.6728 6.2937 41 1 3.0848 -0.5938 5.2773 42 1 3.6825 3.4868 7.0930 43 1 3.2619 -5.2961 0.8309 44 1 4.6326 -4.2238 0.4432 45 1 6.0633 -5.3420 2.0431 46 1 5.2775 -6.6188 1.0839 47 1 5.1246 -7.2761 3.4066 48 1 3.5012 -6.7509 2.9011 49 1 5.5418 -5.1600 4.5200 50 1 3.9382 -5.7260 5.0537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507841687.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:22 Heat of formation + Delta-G solvation = 31.788495 kcal Electronic energy + Delta-G solvation = -31030.303725 eV Core-core repulsion = 27061.061538 eV Total energy + Delta-G solvation = -3969.242187 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.13106 -41.23126 -38.69657 -38.11356 -36.97834 -35.21557 -33.74473 -32.81793 -31.92434 -31.09141 -29.81958 -28.14589 -27.84927 -26.32469 -25.33557 -25.01170 -23.70572 -22.52979 -22.23775 -20.83598 -19.98684 -18.83293 -18.72385 -18.29624 -18.00631 -17.29302 -16.81856 -16.29396 -15.95240 -15.61246 -15.37664 -15.17956 -14.89950 -14.78984 -14.71345 -14.43409 -14.31791 -14.12819 -14.10398 -13.91054 -13.34321 -13.22628 -13.17955 -13.02168 -12.82153 -12.80015 -12.50991 -12.37268 -12.27871 -12.02902 -11.90521 -11.86842 -11.81248 -11.76918 -11.67392 -11.53517 -11.23565 -11.12285 -10.69701 -10.06923 -9.92659 -8.64547 -7.81564 -5.42490 0.07383 0.66376 1.45443 1.45901 1.56650 1.66238 1.97360 2.05262 2.49025 2.82366 3.31253 3.39190 3.68348 3.77039 3.86354 3.97297 4.02733 4.03746 4.06360 4.07775 4.24372 4.26896 4.40541 4.49074 4.51319 4.58134 4.60458 4.65119 4.69096 4.80006 4.86956 4.92267 4.94453 4.95736 5.01852 5.03420 5.12119 5.18721 5.21673 5.26023 5.27111 5.36683 5.38673 5.45515 5.49045 5.65255 5.68734 6.12953 6.36617 6.79283 7.10801 7.15898 7.83033 8.34754 9.19794 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.004005 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.903490 B = 6989.007637 C = 8883.228530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.128 3.872 3 C -0.156 4.156 4 N -0.584 5.584 5 C 0.099 3.901 6 C 0.158 3.842 7 N -0.607 5.607 8 C 0.179 3.821 9 C -0.267 4.267 10 H 0.069 0.931 11 C -0.045 4.045 12 N -0.936 5.936 13 Si 0.969 3.031 14 H -0.263 1.263 15 H -0.290 1.290 16 H -0.292 1.292 17 C 0.594 3.406 18 O -0.553 6.553 19 C -0.046 4.046 20 N -0.336 5.336 21 O 0.119 5.881 22 C -0.030 4.030 23 C -0.171 4.171 24 C -0.041 4.041 25 C -0.119 4.119 26 C -0.112 4.112 27 C -0.037 4.037 28 H 0.054 0.946 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.020 0.980 38 H 0.042 0.958 39 H -0.002 1.002 40 H 0.008 0.992 41 H 0.039 0.961 42 H 0.248 0.752 43 H 0.081 0.919 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.111 0.889 48 H 0.070 0.930 49 H 0.111 0.889 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -19.409 -9.736 21.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.026 3.974 3 C -0.213 4.213 4 N -0.316 5.316 5 C -0.026 4.026 6 C 0.031 3.969 7 N -0.331 5.331 8 C 0.034 3.966 9 C -0.397 4.397 10 H 0.086 0.914 11 C -0.241 4.241 12 N -0.581 5.581 13 Si 0.797 3.203 14 H -0.187 1.187 15 H -0.217 1.217 16 H -0.218 1.218 17 C 0.381 3.619 18 O -0.431 6.431 19 C -0.202 4.202 20 N -0.039 5.039 21 O 0.046 5.954 22 C -0.094 4.094 23 C -0.176 4.176 24 C -0.079 4.079 25 C -0.156 4.156 26 C -0.149 4.149 27 C -0.074 4.074 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.016 0.984 40 H 0.027 0.973 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.129 0.871 48 H 0.089 0.911 49 H 0.129 0.871 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.550 -18.399 -9.662 20.789 hybrid contribution -0.084 1.035 0.149 1.049 sum -0.634 -17.364 -9.513 19.809 Atomic orbital electron populations 1.22099 0.93125 1.02273 1.03547 1.21326 0.95505 0.93435 0.87151 1.22153 1.00875 0.94908 1.03401 1.48117 1.53188 1.21482 1.08835 1.22445 1.00069 0.98446 0.81628 1.20996 0.94129 0.94831 0.86962 1.43877 1.72648 1.16170 1.00361 1.20537 0.96857 0.91651 0.87591 1.19474 1.18776 0.92091 1.09407 0.91365 1.26034 0.97912 1.00985 0.99128 1.70214 1.32524 1.38663 1.16705 0.85187 0.77899 0.79563 0.77691 1.18697 1.21701 1.21849 1.17142 0.77839 0.80610 0.86336 1.90687 1.56959 1.69282 1.26172 1.23129 1.06899 0.97591 0.92611 1.74965 1.15372 1.11938 1.01635 1.84737 1.54771 1.21985 1.33882 1.24975 1.00403 0.93076 0.90953 1.20957 1.04435 0.95124 0.97096 1.20027 1.00071 0.94403 0.93376 1.21728 0.97748 0.97895 0.98247 1.21676 1.02921 0.97335 0.93015 1.20606 1.01502 0.85213 1.00112 0.92647 0.88693 0.92824 0.88459 0.93604 0.88658 0.92855 0.90380 0.89874 0.96147 0.94006 0.98389 0.97288 0.94232 0.94227 0.90116 0.91301 0.91449 0.88751 0.87065 0.91136 0.87100 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 71.98 0.67 -2.93 16 2 C 0.13 3.62 3.22 44.99 0.14 3.77 16 3 C -0.16 -4.29 8.08 71.98 0.58 -3.70 16 4 N -0.58 -19.97 2.39 -800.67 -1.91 -21.89 16 5 C 0.10 3.79 4.44 86.38 0.38 4.18 16 6 C 0.16 7.11 5.29 86.38 0.46 7.56 16 7 N -0.61 -31.97 2.90 -726.94 -2.11 -34.07 16 8 C 0.18 9.41 9.01 127.77 1.15 10.57 16 9 C -0.27 -14.92 9.58 84.04 0.80 -14.12 16 10 H 0.07 3.66 7.84 -2.91 -0.02 3.64 16 11 C -0.04 -2.55 5.23 84.86 0.44 -2.11 16 12 N -0.94 -56.74 10.92 21.65 0.24 -56.51 16 13 Si 0.97 45.36 29.56 68.60 2.03 47.38 16 14 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 16 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 17 C 0.59 21.45 7.64 86.93 0.66 22.11 16 18 O -0.55 -20.82 15.39 -3.71 -0.06 -20.88 16 19 C -0.05 -1.59 6.64 42.55 0.28 -1.31 16 20 N -0.34 -12.10 6.09 -48.95 -0.30 -12.39 16 21 O 0.12 3.71 11.12 78.70 0.88 4.59 16 22 C -0.03 -0.71 7.38 24.99 0.18 -0.53 16 23 C -0.17 -4.71 6.04 -20.05 -0.12 -4.83 16 24 C -0.04 -0.89 5.70 29.83 0.17 -0.72 16 25 C -0.12 -1.57 5.92 30.81 0.18 -1.38 16 26 C -0.11 -1.08 5.88 30.77 0.18 -0.90 16 27 C -0.04 -0.47 6.31 29.96 0.19 -0.28 16 28 H 0.05 1.40 6.94 -2.38 -0.02 1.38 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 2.80 6.91 -2.39 -0.02 2.78 16 32 H 0.04 1.38 7.98 -2.39 -0.02 1.36 16 33 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.05 1.67 6.68 -2.39 -0.02 1.65 16 35 H 0.08 2.98 6.48 -2.38 -0.02 2.96 16 36 H 0.08 3.36 5.40 -2.39 -0.01 3.35 16 37 H 0.02 0.95 6.99 -2.39 -0.02 0.93 16 38 H 0.04 1.90 6.15 -2.39 -0.01 1.89 16 39 H 0.00 -0.13 7.22 -2.39 -0.02 -0.15 16 40 H 0.01 0.47 7.72 -2.39 -0.02 0.45 16 41 H 0.04 1.85 6.39 -2.39 -0.02 1.83 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.07 1.74 7.76 -2.39 -0.02 1.72 16 45 H 0.07 0.92 8.12 -2.39 -0.02 0.90 16 46 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 47 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 48 H 0.07 0.72 8.12 -2.38 -0.02 0.70 16 49 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -71.81 385.42 6.07 -65.74 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.94 Total: 12.66 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 6.37 Total: 15.37 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -4.08 Total: -124.86 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: 0.82 Total: -16.29 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -71.81 6.07 -65.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507841687.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.525 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds