Wall clock time and date at job start Tue Mar 31 2020 18:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46817 * 2 1 4 4 H 1.08993 * 109.47490 * 304.99956 * 3 2 1 5 5 C 1.50699 * 109.46996 * 184.99910 * 3 2 1 6 6 O 1.21278 * 120.00397 * 240.00507 * 5 3 2 7 7 N 1.34775 * 120.00075 * 60.00009 * 5 3 2 8 8 C 1.46499 * 120.00678 * 179.97438 * 7 5 3 9 9 C 1.50693 * 109.47356 * 180.02562 * 8 7 5 10 10 C 1.29449 * 117.69377 * 95.00482 * 9 8 7 11 11 C 1.50327 * 123.65170 * 180.85436 * 10 9 8 12 12 N 1.47002 * 109.16613 * 349.02485 * 11 10 9 13 13 C 1.36936 * 121.37211 * 222.97000 * 12 11 10 14 14 H 1.07998 * 120.00113 * 155.96696 * 13 12 11 15 15 C 1.38812 * 120.00276 * 335.96410 * 13 12 11 16 16 N 1.31622 * 119.99677 * 344.52453 * 15 13 12 17 17 Si 1.86801 * 120.00324 * 164.52152 * 15 13 12 18 18 H 1.48496 * 109.47151 * 90.00188 * 17 15 13 19 19 H 1.48502 * 109.47178 * 210.00561 * 17 15 13 20 20 H 1.48505 * 109.46624 * 330.00159 * 17 15 13 21 21 C 1.47339 * 117.25381 * 42.94289 * 12 11 10 22 22 C 1.49971 * 117.69639 * 274.73628 * 9 8 7 23 23 N 1.46506 * 109.46884 * 65.00355 * 3 2 1 24 24 C 1.46763 * 124.34508 * 239.99248 * 23 3 2 25 25 C 1.54479 * 105.47082 * 197.01624 * 24 23 3 26 26 C 1.54624 * 101.76892 * 334.58878 * 25 24 23 27 27 C 1.34412 * 124.34799 * 59.69753 * 23 3 2 28 28 O 1.21277 * 124.94749 * 359.56402 * 27 23 3 29 29 H 1.09000 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46820 * 299.99936 * 1 2 3 31 31 H 1.08998 * 109.46840 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.46576 * 240.00512 * 2 1 3 33 33 H 1.08998 * 109.46840 * 120.00162 * 2 1 3 34 34 H 0.97004 * 119.99612 * 0.02562 * 7 5 3 35 35 H 1.09000 * 109.46801 * 300.00754 * 8 7 5 36 36 H 1.09003 * 109.46602 * 60.00162 * 8 7 5 37 37 H 1.08000 * 118.17863 * 0.87633 * 10 9 8 38 38 H 1.09003 * 109.51917 * 108.92733 * 11 10 9 39 39 H 1.08996 * 109.52303 * 229.10863 * 11 10 9 40 40 H 0.97000 * 119.99664 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.77534 * 57.80869 * 21 12 11 42 42 H 1.08998 * 109.77855 * 178.62311 * 21 12 11 43 43 H 1.08997 * 109.31877 * 281.29648 * 22 9 8 44 44 H 1.09003 * 109.31103 * 40.72256 * 22 9 8 45 45 H 1.08988 * 110.25064 * 316.01932 * 24 23 3 46 46 H 1.08999 * 110.24269 * 78.02483 * 24 23 3 47 47 H 1.08998 * 110.96891 * 92.70934 * 25 24 23 48 48 H 1.09000 * 110.97048 * 216.46705 * 25 24 23 49 49 H 1.09001 * 110.49346 * 143.47342 * 26 25 24 50 50 H 1.09002 * 110.48888 * 265.98587 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4444 -0.1238 6 8 4.2216 1.9435 0.7478 7 7 4.1298 0.8912 -1.2031 8 6 5.5898 0.8934 -1.3238 9 6 5.9884 0.2201 -2.6117 10 6 6.1977 0.9724 -3.6442 11 6 6.5820 0.4420 -4.9972 12 7 6.9280 -0.9816 -4.8770 13 6 8.0172 -1.5072 -5.5195 14 1 8.4846 -2.4052 -5.1433 15 6 8.5204 -0.8859 -6.6542 16 7 7.7960 0.0108 -7.2894 17 14 10.2256 -1.3224 -7.2797 18 1 10.1264 -2.4482 -8.2429 19 1 10.8215 -0.1426 -7.9567 20 1 11.0845 -1.7232 -6.1364 21 6 6.0551 -1.8195 -4.0364 22 6 6.1206 -1.2737 -2.6054 23 7 1.6524 2.0974 1.2519 24 6 0.8076 3.2948 1.3330 25 6 1.0291 3.8600 2.7535 26 6 1.4532 2.5943 3.5339 27 6 2.0202 1.6756 2.4740 28 8 2.7086 0.7018 2.6947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.5861 0.4922 -1.9004 35 1 5.9527 1.9212 -1.3240 36 1 6.0247 0.3547 -0.4820 37 1 6.0906 2.0407 -3.5269 38 1 5.7438 0.5563 -5.6847 39 1 7.4418 0.9954 -5.3747 40 1 8.1477 0.4453 -8.0822 41 1 5.0310 -1.7725 -4.4066 42 1 6.4070 -2.8510 -4.0526 43 1 7.0735 -1.5495 -2.1537 44 1 5.3089 -1.7050 -2.0195 45 1 1.1151 4.0248 0.5844 46 1 -0.2397 3.0276 1.1925 47 1 1.8244 4.6052 2.7572 48 1 0.1054 4.2754 3.1564 49 1 2.2130 2.8401 4.2758 50 1 0.5890 2.1337 4.0126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001508229468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:27 Heat of formation + Delta-G solvation = -31.000109 kcal Electronic energy + Delta-G solvation = -29569.972374 eV Core-core repulsion = 25598.007469 eV Total energy + Delta-G solvation = -3971.964905 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.01862 -39.26254 -37.72856 -36.50873 -35.14331 -34.91619 -32.84545 -31.28300 -30.89357 -29.74801 -28.08242 -27.77920 -26.34574 -24.07397 -22.77354 -22.56015 -22.20310 -21.26964 -20.84685 -19.24286 -17.78769 -17.46794 -17.12521 -16.78531 -15.74249 -15.59532 -15.37721 -14.97929 -14.90863 -14.59947 -14.24897 -13.89674 -13.84415 -13.68126 -13.63452 -13.43406 -13.23590 -13.07569 -12.85455 -12.72343 -12.27582 -12.18957 -12.02798 -11.87903 -11.57459 -11.51072 -11.38421 -11.33958 -11.24510 -10.92899 -10.73602 -10.41275 -10.33320 -9.99889 -9.84519 -9.74671 -9.61747 -8.94327 -8.88730 -8.68838 -8.06461 -6.76616 -5.82021 -3.20534 2.34594 2.62611 2.68021 2.75896 3.36839 3.43836 3.46591 3.55885 4.09129 4.14896 4.45659 4.47972 4.56089 4.60720 4.68155 4.79533 4.96010 5.08821 5.11776 5.15928 5.21924 5.34498 5.35747 5.39045 5.40701 5.49621 5.57071 5.62902 5.64725 5.78300 5.84315 5.94471 5.95632 6.06624 6.16856 6.26839 6.32385 6.45844 6.54335 6.72211 6.85640 6.94642 7.14580 7.23919 7.30803 7.58211 7.71222 7.80490 8.08879 8.28988 8.35946 9.17453 9.80182 10.38031 11.28541 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.002206 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.901908 B =12690.890631 C =12837.469970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.138 4.138 3 C 0.144 3.856 4 H 0.113 0.887 5 C 0.500 3.500 6 O -0.526 6.526 7 N -0.719 5.719 8 C 0.159 3.841 9 C -0.164 4.164 10 C -0.125 4.125 11 C 0.194 3.806 12 N -0.595 5.595 13 C -0.245 4.245 14 H 0.068 0.932 15 C -0.002 4.002 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.280 1.280 21 C 0.144 3.856 22 C -0.090 4.090 23 N -0.606 5.606 24 C 0.105 3.895 25 C -0.130 4.130 26 C -0.154 4.154 27 C 0.526 3.474 28 O -0.516 6.516 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.041 0.959 39 H 0.093 0.907 40 H 0.254 0.746 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.100 0.900 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.491 7.362 16.574 26.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C 0.037 3.963 4 H 0.130 0.870 5 C 0.284 3.716 6 O -0.401 6.401 7 N -0.371 5.371 8 C 0.037 3.963 9 C -0.165 4.165 10 C -0.146 4.146 11 C 0.069 3.931 12 N -0.319 5.319 13 C -0.375 4.375 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.556 5.556 17 Si 0.734 3.266 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.018 3.982 22 C -0.129 4.129 23 N -0.341 5.341 24 C -0.018 4.018 25 C -0.168 4.168 26 C -0.195 4.195 27 C 0.314 3.686 28 O -0.390 6.390 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.041 0.959 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.091 0.909 47 H 0.101 0.899 48 H 0.108 0.892 49 H 0.119 0.881 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.516 7.253 17.122 26.242 hybrid contribution 0.665 -0.132 -0.814 1.059 sum -17.851 7.121 16.308 25.206 Atomic orbital electron populations 1.21707 0.94621 1.02143 1.01750 1.21914 0.97055 0.94106 1.04537 1.20882 0.92296 0.95742 0.87395 0.86969 1.20792 0.90287 0.78570 0.81998 1.90705 1.65001 1.44864 1.39549 1.46130 1.08283 1.60019 1.22649 1.20435 0.79047 0.99984 0.96849 1.20499 1.06166 0.96097 0.93753 1.23275 0.95493 0.98296 0.97533 1.19754 0.99876 0.85012 0.88418 1.44128 1.29068 1.03433 1.55226 1.19175 1.03456 1.10150 1.04679 0.91381 1.24986 0.99055 1.00034 0.95874 1.70007 1.35632 1.30596 1.19328 0.86258 0.84336 0.77400 0.78576 1.21423 1.21561 1.20528 1.20990 0.93696 0.94559 0.88980 1.20792 1.00533 0.91841 0.99777 1.47904 1.51438 1.29526 1.05246 1.22097 0.94568 0.86644 0.98518 1.22573 1.03062 0.97223 0.93969 1.22308 1.03055 0.95993 0.98105 1.20722 0.78949 0.84985 0.83970 1.90717 1.36837 1.27981 1.83490 0.92160 0.92750 0.92506 0.90086 0.89620 0.76546 0.91832 0.91643 0.88848 0.94128 0.88903 0.93616 0.95868 0.92460 0.91709 0.92869 0.90431 0.90940 0.89882 0.89209 0.88109 0.88094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.80 37.16 0.36 -0.67 16 2 C -0.14 -1.30 5.30 -26.73 -0.14 -1.44 16 3 C 0.14 1.47 2.67 -69.08 -0.18 1.28 16 4 H 0.11 0.83 8.07 -51.93 -0.42 0.41 16 5 C 0.50 7.09 6.86 -10.99 -0.08 7.02 16 6 O -0.53 -9.70 14.92 -8.59 -0.13 -9.83 16 7 N -0.72 -9.56 5.41 -61.48 -0.33 -9.89 16 8 C 0.16 2.49 5.66 -5.20 -0.03 2.46 16 9 C -0.16 -2.83 5.22 -100.99 -0.53 -3.36 16 10 C -0.13 -2.35 9.47 -35.78 -0.34 -2.69 16 11 C 0.19 4.53 5.23 -5.10 -0.03 4.50 16 12 N -0.60 -14.73 3.01 -173.56 -0.52 -15.25 16 13 C -0.25 -6.69 9.71 -15.06 -0.15 -6.83 16 14 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 15 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 16 N -0.91 -25.98 11.08 55.49 0.61 -25.37 16 17 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 C 0.14 2.94 6.59 -3.43 -0.02 2.92 16 22 C -0.09 -1.59 5.95 -28.09 -0.17 -1.75 16 23 N -0.61 -6.07 2.07 -166.16 -0.34 -6.41 16 24 C 0.10 0.63 7.30 -3.12 -0.02 0.60 16 25 C -0.13 -0.68 7.18 -25.10 -0.18 -0.86 16 26 C -0.15 -1.19 6.86 -26.74 -0.18 -1.37 16 27 C 0.53 6.54 6.68 -10.86 -0.07 6.47 16 28 O -0.52 -8.83 15.36 -8.59 -0.13 -8.96 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.39 7.75 -51.93 -0.40 -0.01 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.69 7.43 -51.93 -0.39 0.30 16 33 H 0.09 1.08 6.60 -51.93 -0.34 0.73 16 34 H 0.40 4.50 7.82 -40.82 -0.32 4.18 16 35 H 0.06 1.03 7.78 -51.93 -0.40 0.62 16 36 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 37 H 0.09 1.58 7.73 -52.49 -0.41 1.17 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.09 2.43 6.41 -51.93 -0.33 2.09 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 1.15 7.96 -51.93 -0.41 0.73 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.42 8.14 -51.94 -0.42 -0.01 16 46 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 49 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -35.08 397.79 -10.19 -45.27 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -8.47 Total: 1.67 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.84 Total: 6.14 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.58 Total: -56.93 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: -0.26 Total: -18.79 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.08 -10.19 -45.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508229468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.269 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds