Wall clock time and date at job start Tue Mar 31 2020 18:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46817 * 2 1 4 4 H 1.08993 * 109.47490 * 304.99956 * 3 2 1 5 5 C 1.50699 * 109.46996 * 184.99910 * 3 2 1 6 6 O 1.21278 * 120.00397 * 240.00507 * 5 3 2 7 7 N 1.34775 * 120.00075 * 60.00009 * 5 3 2 8 8 C 1.46499 * 120.00678 * 179.97438 * 7 5 3 9 9 C 1.50693 * 109.47356 * 180.02562 * 8 7 5 10 10 C 1.29449 * 117.69377 * 95.00482 * 9 8 7 11 11 C 1.50327 * 123.65170 * 180.85436 * 10 9 8 12 12 N 1.47002 * 109.16613 * 349.02485 * 11 10 9 13 13 C 1.36936 * 121.37211 * 222.97000 * 12 11 10 14 14 H 1.07998 * 120.00113 * 155.96696 * 13 12 11 15 15 C 1.38812 * 120.00276 * 335.96410 * 13 12 11 16 16 N 1.31622 * 119.99677 * 344.52453 * 15 13 12 17 17 Si 1.86801 * 120.00324 * 164.52152 * 15 13 12 18 18 H 1.48496 * 109.47151 * 90.00188 * 17 15 13 19 19 H 1.48502 * 109.47178 * 210.00561 * 17 15 13 20 20 H 1.48505 * 109.46624 * 330.00159 * 17 15 13 21 21 C 1.47339 * 117.25381 * 42.94289 * 12 11 10 22 22 C 1.49971 * 117.69639 * 274.73628 * 9 8 7 23 23 N 1.46506 * 109.46884 * 65.00355 * 3 2 1 24 24 C 1.46763 * 124.34508 * 239.99248 * 23 3 2 25 25 C 1.54479 * 105.47082 * 197.01624 * 24 23 3 26 26 C 1.54624 * 101.76892 * 334.58878 * 25 24 23 27 27 C 1.34412 * 124.34799 * 59.69753 * 23 3 2 28 28 O 1.21277 * 124.94749 * 359.56402 * 27 23 3 29 29 H 1.09000 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46820 * 299.99936 * 1 2 3 31 31 H 1.08998 * 109.46840 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.46576 * 240.00512 * 2 1 3 33 33 H 1.08998 * 109.46840 * 120.00162 * 2 1 3 34 34 H 0.97004 * 119.99612 * 0.02562 * 7 5 3 35 35 H 1.09000 * 109.46801 * 300.00754 * 8 7 5 36 36 H 1.09003 * 109.46602 * 60.00162 * 8 7 5 37 37 H 1.08000 * 118.17863 * 0.87633 * 10 9 8 38 38 H 1.09003 * 109.51917 * 108.92733 * 11 10 9 39 39 H 1.08996 * 109.52303 * 229.10863 * 11 10 9 40 40 H 0.97000 * 119.99664 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.77534 * 57.80869 * 21 12 11 42 42 H 1.08998 * 109.77855 * 178.62311 * 21 12 11 43 43 H 1.08997 * 109.31877 * 281.29648 * 22 9 8 44 44 H 1.09003 * 109.31103 * 40.72256 * 22 9 8 45 45 H 1.08988 * 110.25064 * 316.01932 * 24 23 3 46 46 H 1.08999 * 110.24269 * 78.02483 * 24 23 3 47 47 H 1.08998 * 110.96891 * 92.70934 * 25 24 23 48 48 H 1.09000 * 110.97048 * 216.46705 * 25 24 23 49 49 H 1.09001 * 110.49346 * 143.47342 * 26 25 24 50 50 H 1.09002 * 110.48888 * 265.98587 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5419 1.4444 -0.1238 6 8 4.2216 1.9435 0.7478 7 7 4.1298 0.8912 -1.2031 8 6 5.5898 0.8934 -1.3238 9 6 5.9884 0.2201 -2.6117 10 6 6.1977 0.9724 -3.6442 11 6 6.5820 0.4420 -4.9972 12 7 6.9280 -0.9816 -4.8770 13 6 8.0172 -1.5072 -5.5195 14 1 8.4846 -2.4052 -5.1433 15 6 8.5204 -0.8859 -6.6542 16 7 7.7960 0.0108 -7.2894 17 14 10.2256 -1.3224 -7.2797 18 1 10.1264 -2.4482 -8.2429 19 1 10.8215 -0.1426 -7.9567 20 1 11.0845 -1.7232 -6.1364 21 6 6.0551 -1.8195 -4.0364 22 6 6.1206 -1.2737 -2.6054 23 7 1.6524 2.0974 1.2519 24 6 0.8076 3.2948 1.3330 25 6 1.0291 3.8600 2.7535 26 6 1.4532 2.5943 3.5339 27 6 2.0202 1.6756 2.4740 28 8 2.7086 0.7018 2.6947 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 3.5861 0.4922 -1.9004 35 1 5.9527 1.9212 -1.3240 36 1 6.0247 0.3547 -0.4820 37 1 6.0906 2.0407 -3.5269 38 1 5.7438 0.5563 -5.6847 39 1 7.4418 0.9954 -5.3747 40 1 8.1477 0.4453 -8.0822 41 1 5.0310 -1.7725 -4.4066 42 1 6.4070 -2.8510 -4.0526 43 1 7.0735 -1.5495 -2.1537 44 1 5.3089 -1.7050 -2.0195 45 1 1.1151 4.0248 0.5844 46 1 -0.2397 3.0276 1.1925 47 1 1.8244 4.6052 2.7572 48 1 0.1054 4.2754 3.1564 49 1 2.2130 2.8401 4.2758 50 1 0.5890 2.1337 4.0126 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001508229468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:25 Heat of formation + Delta-G solvation = -53.069275 kcal Electronic energy + Delta-G solvation = -29570.929365 eV Core-core repulsion = 25598.007469 eV Total energy + Delta-G solvation = -3972.921896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.87825 -40.37392 -39.28873 -37.40291 -36.43055 -35.90088 -34.48868 -32.62756 -31.89560 -31.44814 -29.23172 -28.41710 -27.69963 -25.70688 -24.39843 -23.31379 -22.90673 -22.71030 -21.97577 -20.19384 -19.49613 -18.59412 -17.95932 -17.53640 -17.31504 -17.01779 -16.69459 -16.26666 -15.99410 -15.66798 -15.42089 -15.24706 -15.23181 -14.98577 -14.59459 -14.43775 -14.37793 -14.04285 -13.86691 -13.71282 -13.51396 -13.30890 -13.28689 -12.98204 -12.91138 -12.80601 -12.59721 -12.41148 -12.25768 -12.15888 -12.10787 -11.96470 -11.82187 -11.72556 -11.31204 -11.06824 -10.69525 -10.64749 -10.14373 -9.79196 -9.56961 -8.75822 -7.89742 -5.30469 1.11843 1.45729 1.47663 1.56278 1.56846 1.62875 1.98300 2.47238 2.50260 3.27550 3.44000 3.60157 3.65055 3.71986 3.82991 3.87207 3.92705 3.97553 4.09589 4.21485 4.36419 4.40289 4.48071 4.50600 4.61360 4.68391 4.69569 4.70665 4.80152 4.80965 4.89158 4.89487 5.05267 5.08344 5.09728 5.14801 5.19798 5.24801 5.33022 5.35292 5.39275 5.46572 5.57163 5.60424 5.73939 6.13973 6.19606 6.33021 6.50359 7.12742 7.15899 7.29099 7.82427 8.35970 9.18879 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026971 B = 0.002206 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.901908 B =12690.890631 C =12837.469970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.144 3.856 4 H 0.150 0.850 5 C 0.495 3.505 6 O -0.573 6.573 7 N -0.709 5.709 8 C 0.171 3.829 9 C -0.139 4.139 10 C -0.137 4.137 11 C 0.205 3.795 12 N -0.616 5.616 13 C -0.258 4.258 14 H 0.068 0.932 15 C -0.053 4.053 16 N -0.938 5.938 17 Si 0.967 3.033 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.274 1.274 21 C 0.141 3.859 22 C -0.085 4.085 23 N -0.606 5.606 24 C 0.097 3.903 25 C -0.120 4.120 26 C -0.152 4.152 27 C 0.507 3.493 28 O -0.578 6.578 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.413 0.587 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.114 0.886 38 H 0.019 0.981 39 H 0.057 0.943 40 H 0.250 0.750 41 H 0.032 0.968 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.084 0.916 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.093 0.907 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 8.083 17.303 29.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.037 3.963 4 H 0.168 0.832 5 C 0.281 3.719 6 O -0.451 6.451 7 N -0.362 5.362 8 C 0.047 3.953 9 C -0.140 4.140 10 C -0.158 4.158 11 C 0.080 3.920 12 N -0.340 5.340 13 C -0.388 4.388 14 H 0.086 0.914 15 C -0.248 4.248 16 N -0.584 5.584 17 Si 0.795 3.205 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.199 1.199 21 C 0.015 3.985 22 C -0.123 4.123 23 N -0.339 5.339 24 C -0.024 4.024 25 C -0.158 4.158 26 C -0.192 4.192 27 C 0.296 3.704 28 O -0.457 6.457 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.250 0.750 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.036 0.964 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.121 0.879 47 H 0.094 0.906 48 H 0.143 0.857 49 H 0.112 0.888 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.943 7.985 17.840 28.646 hybrid contribution 1.361 -0.405 -0.996 1.735 sum -19.582 7.580 16.843 26.918 Atomic orbital electron populations 1.21665 0.92430 1.02638 1.02777 1.21867 0.98844 0.93221 1.03193 1.21031 0.89290 0.96972 0.88959 0.83225 1.21590 0.92052 0.77245 0.81001 1.90687 1.66437 1.46929 1.41084 1.45971 1.07295 1.59869 1.23053 1.20147 0.80609 0.99375 0.95136 1.20542 1.03797 0.95895 0.93756 1.22955 0.97562 0.99477 0.95772 1.19420 0.97660 0.84422 0.90480 1.44406 1.29432 1.04510 1.55614 1.19483 1.04418 1.10109 1.04751 0.91416 1.25714 1.02262 1.00432 0.96386 1.70154 1.36954 1.31686 1.19643 0.85287 0.80356 0.76903 0.77979 1.21013 1.21841 1.19944 1.21159 0.93318 0.94245 0.89746 1.20720 1.01478 0.91990 0.98141 1.48131 1.51016 1.30288 1.04479 1.22463 0.95406 0.85310 0.99242 1.22624 1.04411 0.95657 0.93108 1.22361 1.03393 0.96395 0.97025 1.21609 0.78250 0.84723 0.85770 1.90670 1.39690 1.30705 1.84635 0.92032 0.92807 0.90266 0.89137 0.93277 0.75017 0.92131 0.92665 0.86817 0.96375 0.92452 0.94061 0.94945 0.92377 0.92281 0.89771 0.89405 0.87912 0.90613 0.85704 0.88849 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.80 71.98 0.71 -0.87 16 2 C -0.13 -2.29 5.30 30.60 0.16 -2.13 16 3 C 0.14 2.64 2.67 44.24 0.12 2.76 16 4 H 0.15 1.60 8.07 -2.39 -0.02 1.59 16 5 C 0.50 13.57 6.86 87.66 0.60 14.17 16 6 O -0.57 -21.26 14.92 10.50 0.16 -21.11 16 7 N -0.71 -17.72 5.41 -466.80 -2.53 -20.24 16 8 C 0.17 5.14 5.66 85.63 0.48 5.62 16 9 C -0.14 -4.61 5.22 -15.13 -0.08 -4.69 16 10 C -0.14 -5.09 9.47 27.11 0.26 -4.84 16 11 C 0.21 9.78 5.23 85.42 0.45 10.23 16 12 N -0.62 -30.75 3.01 -703.03 -2.11 -32.86 16 13 C -0.26 -14.21 9.71 84.03 0.82 -13.39 16 14 H 0.07 3.65 7.88 -2.91 -0.02 3.62 16 15 C -0.05 -2.96 5.01 84.86 0.43 -2.54 16 16 N -0.94 -54.88 11.08 21.65 0.24 -54.64 16 17 Si 0.97 45.13 29.58 68.60 2.03 47.16 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.14 5.62 6.59 86.32 0.57 6.19 16 22 C -0.08 -2.83 5.95 29.72 0.18 -2.66 16 23 N -0.61 -11.01 2.07 -798.22 -1.66 -12.66 16 24 C 0.10 0.81 7.30 86.83 0.63 1.45 16 25 C -0.12 -0.87 7.18 31.65 0.23 -0.65 16 26 C -0.15 -2.12 6.86 30.59 0.21 -1.91 16 27 C 0.51 12.46 6.68 87.90 0.59 13.05 16 28 O -0.58 -20.63 15.36 10.51 0.16 -20.46 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.63 7.75 -2.39 -0.02 0.61 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 32 H 0.09 1.34 7.43 -2.39 -0.02 1.32 16 33 H 0.05 1.24 6.60 -2.39 -0.02 1.23 16 34 H 0.41 8.25 7.82 -92.71 -0.73 7.52 16 35 H 0.06 1.90 7.78 -2.39 -0.02 1.88 16 36 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 37 H 0.11 3.74 7.73 -2.91 -0.02 3.72 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.06 3.12 6.41 -2.39 -0.02 3.10 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.06 2.28 7.96 -2.39 -0.02 2.26 16 43 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 46 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.42 16 50 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -80.82 397.79 2.84 -77.98 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.20 Total: 17.05 kcal Atomic # 6 Polarization: 13.46 SS G_CDS: 6.34 Total: 19.80 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -6.05 Total: -120.41 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: 0.32 Total: -41.57 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -80.82 2.84 -77.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001508229468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.910 kcal (2) G-P(sol) polarization free energy of solvation -80.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds