Wall clock time and date at job start Tue Mar 31 2020 19:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 N 1.46500 * 109.47075 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00131 * 269.99757 * 4 3 2 6 6 O 1.21278 * 120.00254 * 179.97438 * 5 4 3 7 7 C 1.50702 * 120.00080 * 0.02562 * 5 4 3 8 8 C 1.50695 * 109.47196 * 180.02562 * 7 5 4 9 9 C 1.41380 * 126.80276 * 124.70974 * 8 7 5 10 10 C 1.35452 * 103.98703 * 179.88387 * 9 8 7 11 11 C 1.50693 * 126.77771 * 180.09575 * 10 9 8 12 12 O 1.34047 * 106.44275 * 0.37187 * 10 9 8 13 13 N 1.20913 * 111.56406 * 359.74418 * 12 10 9 14 14 C 1.46507 * 120.00027 * 89.99737 * 4 3 2 15 15 C 1.53350 * 109.41582 * 240.13227 * 14 4 3 16 16 C 1.53194 * 109.14857 * 178.67461 * 15 14 4 17 17 N 1.46934 * 108.89214 * 54.57312 * 16 15 14 18 18 C 1.36935 * 120.62776 * 126.34278 * 17 16 15 19 19 H 1.08003 * 120.00334 * 331.82288 * 18 17 16 20 20 C 1.38816 * 120.00109 * 151.82327 * 18 17 16 21 21 N 1.31624 * 119.99356 * 343.07479 * 20 18 17 22 22 Si 1.86793 * 120.00395 * 163.07501 * 20 18 17 23 23 H 1.48500 * 109.47341 * 59.99642 * 22 20 18 24 24 H 1.48496 * 109.47062 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46651 * 299.99824 * 22 20 18 26 26 C 1.46917 * 118.73910 * 306.32295 * 17 16 15 27 27 C 1.53038 * 109.46172 * 119.99996 * 14 4 3 28 28 H 1.08994 * 109.46941 * 300.00194 * 1 2 3 29 29 H 1.08995 * 109.47265 * 60.00261 * 1 2 3 30 30 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46941 * 239.99806 * 2 1 3 32 32 H 1.09000 * 109.46821 * 119.99909 * 2 1 3 33 33 H 1.09000 * 109.47681 * 59.99780 * 3 2 1 34 34 H 1.09007 * 109.47019 * 299.99490 * 3 2 1 35 35 H 1.09000 * 109.46651 * 299.99565 * 7 5 4 36 36 H 1.08995 * 109.47015 * 59.99219 * 7 5 4 37 37 H 1.08004 * 128.00566 * 0.02562 * 9 8 7 38 38 H 1.09008 * 109.47344 * 180.30570 * 11 10 9 39 39 H 1.09008 * 109.47495 * 300.30206 * 11 10 9 40 40 H 1.09000 * 109.47560 * 60.29997 * 11 10 9 41 41 H 1.09005 * 109.45906 * 0.02863 * 14 4 3 42 42 H 1.08992 * 109.69166 * 58.70714 * 15 14 4 43 43 H 1.09002 * 109.47268 * 298.50915 * 15 14 4 44 44 H 1.08993 * 109.58759 * 294.71698 * 16 15 14 45 45 H 1.09001 * 109.58865 * 174.43210 * 16 15 14 46 46 H 0.96997 * 119.99488 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.58812 * 173.39821 * 26 17 16 48 48 H 1.09004 * 109.58911 * 293.67958 * 26 17 16 49 49 H 1.09007 * 109.49142 * 61.43364 * 27 14 4 50 50 H 1.08995 * 109.49863 * 301.33893 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1784 1.4428 1.1680 6 8 5.3911 1.4424 1.1686 7 6 3.4243 1.4425 2.4729 8 6 4.4031 1.4435 3.6187 9 6 4.4624 2.3743 4.6811 10 6 5.4994 1.9420 5.4377 11 6 6.0109 2.5678 6.7095 12 8 5.9848 0.8512 4.8284 13 7 5.3651 0.5907 3.8233 14 6 4.2381 1.4424 -1.2679 15 6 5.1168 0.1882 -1.3486 16 6 5.8550 0.1774 -2.6909 17 7 6.5891 1.4414 -2.8403 18 6 7.9308 1.4407 -3.1143 19 1 8.5478 0.6158 -2.7898 20 6 8.4979 2.5003 -3.8090 21 7 7.7314 3.3272 -4.4882 22 14 10.3485 2.7525 -3.7801 23 1 11.0204 1.5538 -4.3430 24 1 10.6983 3.9446 -4.5935 25 1 10.7978 2.9601 -2.3799 26 6 5.8563 2.7059 -2.6906 27 6 5.1178 2.6920 -1.3486 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 2.7974 2.3322 2.5303 36 1 2.7980 0.5523 2.5303 37 1 3.8264 3.2304 4.8515 38 1 6.8593 1.9934 7.0816 39 1 6.3255 3.5922 6.5096 40 1 5.2180 2.5708 7.4575 41 1 3.5299 1.4427 -2.0965 42 1 4.4937 -0.7025 -1.2689 43 1 5.8418 0.1995 -0.5348 44 1 5.1352 0.0747 -3.5029 45 1 6.5556 -0.6573 -2.7160 46 1 8.1277 4.0673 -4.9740 47 1 6.5579 3.5397 -2.7130 48 1 5.1382 2.8106 -3.5040 49 1 5.8426 2.6797 -0.5345 50 1 4.4939 3.5820 -1.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566696800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:22 Heat of formation + Delta-G solvation = 42.416319 kcal Electronic energy + Delta-G solvation = -30281.306214 eV Core-core repulsion = 26312.524884 eV Total energy + Delta-G solvation = -3968.781330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.92195 -40.12719 -37.08492 -36.00397 -34.69119 -33.54799 -33.24538 -32.02121 -30.34844 -29.69699 -28.79581 -27.90741 -26.21097 -24.85313 -23.20425 -22.52217 -22.11720 -21.70950 -20.54580 -19.40314 -18.50087 -17.63613 -17.29723 -16.88176 -16.28671 -15.95260 -15.28008 -14.81765 -14.74868 -14.45906 -13.95269 -13.88912 -13.69326 -13.51459 -13.46141 -13.22994 -13.07169 -12.91031 -12.87591 -12.49275 -12.45189 -12.27729 -12.24456 -11.84584 -11.51269 -11.31551 -11.11924 -11.04346 -10.94246 -10.82825 -10.61761 -10.28318 -10.14092 -10.04536 -9.99311 -9.60109 -9.46784 -9.34151 -9.12203 -8.43797 -8.20061 -6.56443 -5.69347 -3.10211 1.46685 2.16908 2.86081 3.06879 3.20524 3.46657 3.50849 3.54952 4.05979 4.28894 4.58987 4.59545 4.72859 4.82652 4.89259 4.98305 5.02322 5.09326 5.12371 5.24444 5.25043 5.35230 5.42419 5.45164 5.50200 5.53917 5.55175 5.67611 5.72053 5.76581 5.82066 5.88767 5.91857 5.95280 6.11201 6.23700 6.40574 6.44474 6.61770 6.67742 6.82196 6.89769 7.10666 7.20345 7.46460 7.66323 7.78689 7.89942 8.32663 8.48286 8.55978 9.31774 9.95279 10.51914 11.39601 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009342 B = 0.003761 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.547679 B = 7443.299282 C = 9747.812923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.107 3.893 4 N -0.611 5.611 5 C 0.511 3.489 6 O -0.504 6.504 7 C -0.063 4.063 8 C 0.029 3.971 9 C -0.231 4.231 10 C -0.040 4.040 11 C -0.073 4.073 12 O 0.105 5.895 13 N -0.333 5.333 14 C 0.162 3.838 15 C -0.146 4.146 16 C 0.151 3.849 17 N -0.589 5.589 18 C -0.246 4.246 19 H 0.064 0.936 20 C 0.001 3.999 21 N -0.906 5.906 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.177 3.823 27 C -0.153 4.153 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.169 0.831 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.014 0.986 45 H 0.054 0.946 46 H 0.253 0.747 47 H 0.088 0.912 48 H 0.015 0.985 49 H 0.077 0.923 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.436 -1.456 19.336 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.017 4.017 4 N -0.345 5.345 5 C 0.297 3.703 6 O -0.378 6.378 7 C -0.103 4.103 8 C -0.131 4.131 9 C -0.252 4.252 10 C -0.103 4.103 11 C -0.130 4.130 12 O 0.035 5.965 13 N -0.034 5.034 14 C 0.061 3.939 15 C -0.186 4.186 16 C 0.024 3.976 17 N -0.312 5.312 18 C -0.376 4.376 19 H 0.081 0.919 20 C -0.197 4.197 21 N -0.551 5.551 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.050 3.950 27 C -0.193 4.193 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.187 0.813 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.032 0.968 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.033 0.967 49 H 0.096 0.904 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.266 -2.398 18.536 24.133 hybrid contribution 0.227 0.929 0.116 0.964 sum -15.039 -1.468 18.652 24.005 Atomic orbital electron populations 1.21706 0.95208 1.01919 1.01877 1.22008 0.95939 0.97428 1.03000 1.21678 0.80208 0.96726 1.03071 1.48303 1.05966 1.73742 1.06474 1.20138 0.88208 0.77356 0.84610 1.90776 1.13366 1.47005 1.86665 1.20098 0.95937 1.05220 0.89073 1.22797 0.97679 0.94358 0.98265 1.22303 1.02655 1.03722 0.96546 1.24461 0.96245 0.90852 0.98786 1.20308 1.02327 1.00486 0.89907 1.84877 1.46503 1.37446 1.27695 1.73899 1.06567 1.22704 1.00197 1.21162 0.93013 0.97173 0.82574 1.22490 0.99246 0.94965 1.01876 1.20834 0.94137 0.90263 0.92377 1.44001 1.05842 0.99427 1.81916 1.19155 0.83305 1.06555 1.28600 0.91875 1.25005 0.97759 0.99959 0.96975 1.70022 1.33975 1.18303 1.32793 0.86373 0.85662 0.77247 0.77563 1.20904 1.21670 1.21047 1.20711 0.94087 0.90553 0.89600 1.22623 0.99019 0.94404 1.03300 0.92703 0.92443 0.92545 0.91166 0.91944 0.90806 0.90146 0.87186 0.87484 0.81349 0.89939 0.89282 0.89374 0.90658 0.93694 0.90024 0.96769 0.92766 0.93734 0.89420 0.96670 0.90395 0.93871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.15 -1.31 6.26 -26.73 -0.17 -1.48 16 3 C 0.11 1.05 5.18 -4.04 -0.02 1.03 16 4 N -0.61 -8.90 2.42 -165.87 -0.40 -9.30 16 5 C 0.51 8.25 7.09 -10.99 -0.08 8.17 16 6 O -0.50 -10.75 11.84 5.56 0.07 -10.68 16 7 C -0.06 -0.73 4.85 -29.04 -0.14 -0.87 16 8 C 0.03 0.39 6.10 -82.10 -0.50 -0.11 16 9 C -0.23 -2.50 11.05 -39.38 -0.44 -2.93 16 10 C -0.04 -0.43 7.49 -35.31 -0.26 -0.69 16 11 C -0.07 -0.43 10.45 36.00 0.38 -0.05 16 12 O 0.10 1.50 11.20 17.16 0.19 1.69 16 13 N -0.33 -5.49 11.46 33.42 0.38 -5.10 16 14 C 0.16 2.92 2.51 -67.73 -0.17 2.75 16 15 C -0.15 -2.90 5.30 -26.45 -0.14 -3.04 16 16 C 0.15 3.43 6.50 -3.71 -0.02 3.40 16 17 N -0.59 -15.82 2.99 -172.32 -0.52 -16.34 16 18 C -0.25 -7.23 9.58 -15.06 -0.14 -7.38 16 19 H 0.06 1.84 7.89 -52.48 -0.41 1.43 16 20 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 21 N -0.91 -27.28 11.20 55.49 0.62 -26.66 16 22 Si 0.90 22.93 29.59 -169.99 -5.03 17.90 16 23 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 26 C 0.18 4.47 5.30 -3.72 -0.02 4.45 16 27 C -0.15 -3.26 5.27 -26.61 -0.14 -3.40 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.58 7.22 -51.93 -0.37 0.21 16 33 H 0.07 0.55 6.44 -51.93 -0.33 0.22 16 34 H 0.08 0.76 7.92 -51.92 -0.41 0.35 16 35 H 0.11 0.92 7.39 -51.93 -0.38 0.54 16 36 H 0.11 1.04 7.18 -51.93 -0.37 0.67 16 37 H 0.17 1.26 8.06 -52.48 -0.42 0.83 16 38 H 0.08 0.43 8.14 -51.92 -0.42 0.00 16 39 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 1.28 7.79 -51.93 -0.40 0.87 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.90 6.22 -51.93 -0.32 1.57 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 1.23 7.93 -51.93 -0.41 0.81 16 46 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.09 2.49 6.06 -51.93 -0.31 2.18 16 48 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 1.89 6.21 -51.93 -0.32 1.57 16 50 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 393.97 15.07 5.94 5.94 Total: -1.00 -36.29 393.97 -8.61 -44.90 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.28 Total: -1.50 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.59 Total: -0.85 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.09 Total: -57.40 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.26 Total: -8.99 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.03 Total: 17.90 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.29 -8.61 -44.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566696800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.314 kcal (2) G-P(sol) polarization free energy of solvation -36.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds