Wall clock time and date at job start Tue Mar 31 2020 19:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46818 * 2 1 4 4 N 1.46500 * 109.47075 * 179.97438 * 3 2 1 5 5 C 1.34770 * 120.00131 * 269.99757 * 4 3 2 6 6 O 1.21278 * 120.00254 * 179.97438 * 5 4 3 7 7 C 1.50702 * 120.00080 * 0.02562 * 5 4 3 8 8 C 1.50695 * 109.47196 * 180.02562 * 7 5 4 9 9 C 1.41380 * 126.80276 * 124.70974 * 8 7 5 10 10 C 1.35452 * 103.98703 * 179.88387 * 9 8 7 11 11 C 1.50693 * 126.77771 * 180.09575 * 10 9 8 12 12 O 1.34047 * 106.44275 * 0.37187 * 10 9 8 13 13 N 1.20913 * 111.56406 * 359.74418 * 12 10 9 14 14 C 1.46507 * 120.00027 * 89.99737 * 4 3 2 15 15 C 1.53350 * 109.41582 * 240.13227 * 14 4 3 16 16 C 1.53194 * 109.14857 * 178.67461 * 15 14 4 17 17 N 1.46934 * 108.89214 * 54.57312 * 16 15 14 18 18 C 1.36935 * 120.62776 * 126.34278 * 17 16 15 19 19 H 1.08003 * 120.00334 * 331.82288 * 18 17 16 20 20 C 1.38816 * 120.00109 * 151.82327 * 18 17 16 21 21 N 1.31624 * 119.99356 * 343.07479 * 20 18 17 22 22 Si 1.86793 * 120.00395 * 163.07501 * 20 18 17 23 23 H 1.48500 * 109.47341 * 59.99642 * 22 20 18 24 24 H 1.48496 * 109.47062 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46651 * 299.99824 * 22 20 18 26 26 C 1.46917 * 118.73910 * 306.32295 * 17 16 15 27 27 C 1.53038 * 109.46172 * 119.99996 * 14 4 3 28 28 H 1.08994 * 109.46941 * 300.00194 * 1 2 3 29 29 H 1.08995 * 109.47265 * 60.00261 * 1 2 3 30 30 H 1.08997 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46941 * 239.99806 * 2 1 3 32 32 H 1.09000 * 109.46821 * 119.99909 * 2 1 3 33 33 H 1.09000 * 109.47681 * 59.99780 * 3 2 1 34 34 H 1.09007 * 109.47019 * 299.99490 * 3 2 1 35 35 H 1.09000 * 109.46651 * 299.99565 * 7 5 4 36 36 H 1.08995 * 109.47015 * 59.99219 * 7 5 4 37 37 H 1.08004 * 128.00566 * 0.02562 * 9 8 7 38 38 H 1.09008 * 109.47344 * 180.30570 * 11 10 9 39 39 H 1.09008 * 109.47495 * 300.30206 * 11 10 9 40 40 H 1.09000 * 109.47560 * 60.29997 * 11 10 9 41 41 H 1.09005 * 109.45906 * 0.02863 * 14 4 3 42 42 H 1.08992 * 109.69166 * 58.70714 * 15 14 4 43 43 H 1.09002 * 109.47268 * 298.50915 * 15 14 4 44 44 H 1.08993 * 109.58759 * 294.71698 * 16 15 14 45 45 H 1.09001 * 109.58865 * 174.43210 * 16 15 14 46 46 H 0.96997 * 119.99488 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.58812 * 173.39821 * 26 17 16 48 48 H 1.09004 * 109.58911 * 293.67958 * 26 17 16 49 49 H 1.09007 * 109.49142 * 61.43364 * 27 14 4 50 50 H 1.08995 * 109.49863 * 301.33893 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1784 1.4428 1.1680 6 8 5.3911 1.4424 1.1686 7 6 3.4243 1.4425 2.4729 8 6 4.4031 1.4435 3.6187 9 6 4.4624 2.3743 4.6811 10 6 5.4994 1.9420 5.4377 11 6 6.0109 2.5678 6.7095 12 8 5.9848 0.8512 4.8284 13 7 5.3651 0.5907 3.8233 14 6 4.2381 1.4424 -1.2679 15 6 5.1168 0.1882 -1.3486 16 6 5.8550 0.1774 -2.6909 17 7 6.5891 1.4414 -2.8403 18 6 7.9308 1.4407 -3.1143 19 1 8.5478 0.6158 -2.7898 20 6 8.4979 2.5003 -3.8090 21 7 7.7314 3.3272 -4.4882 22 14 10.3485 2.7525 -3.7801 23 1 11.0204 1.5538 -4.3430 24 1 10.6983 3.9446 -4.5935 25 1 10.7978 2.9601 -2.3799 26 6 5.8563 2.7059 -2.6906 27 6 5.1178 2.6920 -1.3486 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 2.7974 2.3322 2.5303 36 1 2.7980 0.5523 2.5303 37 1 3.8264 3.2304 4.8515 38 1 6.8593 1.9934 7.0816 39 1 6.3255 3.5922 6.5096 40 1 5.2180 2.5708 7.4575 41 1 3.5299 1.4427 -2.0965 42 1 4.4937 -0.7025 -1.2689 43 1 5.8418 0.1995 -0.5348 44 1 5.1352 0.0747 -3.5029 45 1 6.5556 -0.6573 -2.7160 46 1 8.1277 4.0673 -4.9740 47 1 6.5579 3.5397 -2.7130 48 1 5.1382 2.8106 -3.5040 49 1 5.8426 2.6797 -0.5345 50 1 4.4939 3.5820 -1.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566696800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:20 Heat of formation + Delta-G solvation = 19.866895 kcal Electronic energy + Delta-G solvation = -30282.284031 eV Core-core repulsion = 26312.524884 eV Total energy + Delta-G solvation = -3969.759146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -45.86859 -41.40644 -38.78622 -37.18379 -35.72175 -34.87072 -34.20389 -33.45800 -31.97617 -31.49878 -30.08174 -28.57062 -27.33279 -26.50809 -24.39912 -23.93670 -23.82284 -22.66929 -21.65149 -21.01167 -19.69248 -18.92939 -18.56149 -18.15445 -17.45639 -17.33625 -16.80070 -16.33928 -15.74561 -15.52439 -15.39591 -15.33574 -14.93990 -14.80263 -14.72000 -14.36998 -14.13817 -14.02312 -13.92273 -13.82960 -13.46536 -13.27593 -13.12234 -13.06192 -12.99410 -12.72794 -12.64450 -12.58616 -12.28484 -12.16569 -12.03509 -11.99521 -11.83498 -11.62892 -11.41084 -11.25446 -11.09037 -10.62969 -10.44644 -10.18668 -9.55042 -8.71889 -7.92379 -5.36591 0.61883 1.25665 1.39825 1.43855 1.50685 1.68206 2.06144 2.34479 2.46890 3.17837 3.22128 3.45026 3.63974 3.67317 3.98744 4.01532 4.05135 4.14438 4.19974 4.22209 4.32514 4.32897 4.43142 4.48959 4.54463 4.61402 4.63915 4.64726 4.75914 4.76097 4.79125 4.85576 4.91481 4.93404 5.00271 5.03293 5.07946 5.12936 5.26351 5.30051 5.30462 5.39999 5.46529 5.50792 5.59137 5.65454 5.78402 6.35162 6.52455 7.10789 7.29816 7.42470 7.81647 8.32772 9.14067 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009342 B = 0.003761 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.547679 B = 7443.299282 C = 9747.812923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.141 4.141 3 C 0.100 3.900 4 N -0.606 5.606 5 C 0.503 3.497 6 O -0.565 6.565 7 C -0.054 4.054 8 C 0.013 3.987 9 C -0.234 4.234 10 C -0.041 4.041 11 C -0.071 4.071 12 O 0.078 5.922 13 N -0.388 5.388 14 C 0.172 3.828 15 C -0.130 4.130 16 C 0.148 3.852 17 N -0.610 5.610 18 C -0.268 4.268 19 H 0.055 0.945 20 C -0.046 4.046 21 N -0.930 5.930 22 Si 0.965 3.035 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.287 1.287 26 C 0.185 3.815 27 C -0.136 4.136 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.152 0.848 36 H 0.130 0.870 37 H 0.205 0.795 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.027 0.973 45 H 0.045 0.955 46 H 0.252 0.748 47 H 0.049 0.951 48 H 0.009 0.991 49 H 0.043 0.957 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.222 -0.677 21.078 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.021 4.021 4 N -0.338 5.338 5 C 0.291 3.709 6 O -0.443 6.443 7 C -0.093 4.093 8 C -0.146 4.146 9 C -0.255 4.255 10 C -0.104 4.104 11 C -0.128 4.128 12 O 0.012 5.988 13 N -0.093 5.093 14 C 0.069 3.931 15 C -0.170 4.170 16 C 0.022 3.978 17 N -0.333 5.333 18 C -0.399 4.399 19 H 0.072 0.928 20 C -0.242 4.242 21 N -0.576 5.576 22 Si 0.792 3.208 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.214 1.214 26 C 0.059 3.941 27 C -0.176 4.176 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.170 0.830 36 H 0.148 0.852 37 H 0.222 0.778 38 H 0.105 0.895 39 H 0.121 0.879 40 H 0.134 0.866 41 H 0.113 0.887 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.045 0.955 45 H 0.064 0.936 46 H 0.061 0.939 47 H 0.067 0.933 48 H 0.027 0.973 49 H 0.062 0.938 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.106 -1.638 20.309 27.257 hybrid contribution 1.065 0.680 -0.386 1.321 sum -17.041 -0.958 19.923 26.234 Atomic orbital electron populations 1.21669 0.93217 1.02356 1.02944 1.21949 0.97534 0.96494 1.02003 1.22062 0.76791 0.97869 1.05377 1.48255 1.07895 1.72905 1.04700 1.20970 0.87792 0.75893 0.86223 1.90770 1.16280 1.49688 1.87609 1.20220 0.95404 1.08218 0.85489 1.23372 0.97340 0.94505 0.99352 1.22764 1.03141 1.04144 0.95437 1.25401 0.95822 0.89542 0.99682 1.20555 1.03381 1.00632 0.88252 1.84804 1.47075 1.39149 1.27786 1.73891 1.08484 1.25163 1.01739 1.20818 0.92908 0.94186 0.85211 1.22250 0.98849 0.97354 0.98548 1.20957 0.94146 0.88363 0.94313 1.44242 1.05629 1.01135 1.82315 1.19402 0.84889 1.06802 1.28778 0.92756 1.25731 1.01972 0.99677 0.96774 1.70151 1.35544 1.18560 1.33309 0.85389 0.80644 0.77510 0.77223 1.19812 1.20999 1.21363 1.20500 0.93140 0.88896 0.91570 1.22330 0.98749 0.97280 0.99285 0.90934 0.92081 0.92502 0.93002 0.92253 0.87329 0.89062 0.83001 0.85212 0.77787 0.89536 0.87924 0.86592 0.88675 0.91104 0.93619 0.95485 0.93631 0.93903 0.93252 0.97338 0.93788 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.91 71.98 0.71 -0.72 16 2 C -0.14 -2.10 6.26 30.60 0.19 -1.90 16 3 C 0.10 1.59 5.18 86.38 0.45 2.04 16 4 N -0.61 -16.43 2.42 -797.09 -1.93 -18.36 16 5 C 0.50 15.74 7.09 87.66 0.62 16.36 16 6 O -0.57 -24.89 11.84 -3.02 -0.04 -24.92 16 7 C -0.05 -1.11 4.85 29.10 0.14 -0.97 16 8 C 0.01 0.35 6.10 43.58 0.27 0.62 16 9 C -0.23 -4.55 11.05 22.40 0.25 -4.30 16 10 C -0.04 -0.83 7.49 25.04 0.19 -0.65 16 11 C -0.07 -0.67 10.45 71.23 0.74 0.07 16 12 O 0.08 2.31 11.20 71.58 0.80 3.11 16 13 N -0.39 -13.13 11.46 -49.56 -0.57 -13.70 16 14 C 0.17 6.05 2.51 45.12 0.11 6.16 16 15 C -0.13 -5.24 5.30 30.78 0.16 -5.07 16 16 C 0.15 6.88 6.50 86.36 0.56 7.44 16 17 N -0.61 -33.91 2.99 -699.10 -2.09 -36.01 16 18 C -0.27 -16.36 9.58 84.03 0.81 -15.56 16 19 H 0.05 3.32 7.89 -2.91 -0.02 3.29 16 20 C -0.05 -2.75 4.92 84.86 0.42 -2.34 16 21 N -0.93 -57.49 11.20 21.65 0.24 -57.25 16 22 Si 0.96 48.33 29.59 68.60 2.03 50.36 16 23 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 24 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 26 C 0.19 9.67 5.30 86.36 0.46 10.13 16 27 C -0.14 -5.88 5.27 30.67 0.16 -5.71 16 28 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.93 7.22 -2.39 -0.02 0.91 16 33 H 0.11 1.02 6.44 -2.39 -0.02 1.01 16 34 H 0.09 1.32 7.92 -2.38 -0.02 1.30 16 35 H 0.15 1.79 7.39 -2.39 -0.02 1.77 16 36 H 0.13 2.09 7.18 -2.39 -0.02 2.07 16 37 H 0.21 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 3.02 7.79 -2.38 -0.02 3.00 16 42 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.05 2.20 6.22 -2.39 -0.01 2.19 16 44 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 46 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 47 H 0.05 2.93 6.06 -2.39 -0.01 2.92 16 48 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 49 H 0.04 2.22 6.21 -2.38 -0.01 2.20 16 50 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -85.94 393.97 5.61 -80.33 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.92 Total: 10.82 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 6.24 Total: 5.61 kcal Atomic # 7 Polarization: -120.96 SS G_CDS: -4.35 Total: -125.31 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: 0.77 Total: -21.82 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -85.94 5.61 -80.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566696800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.198 kcal (2) G-P(sol) polarization free energy of solvation -85.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds