Wall clock time and date at job start Tue Mar 31 2020 19:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47388 * 2 1 4 4 N 1.46494 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.34782 * 119.99704 * 275.76037 * 4 3 2 6 6 O 1.21616 * 119.99773 * 175.70079 * 5 4 3 7 7 C 1.47416 * 120.00280 * 355.70475 * 5 4 3 8 8 C 1.36088 * 126.45232 * 185.81542 * 7 5 4 9 9 O 1.34255 * 106.95216 * 179.97438 * 8 7 5 10 10 C 1.34051 * 108.22688 * 359.97438 * 9 8 7 11 11 C 1.50700 * 125.37784 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.46801 * 270.02835 * 11 10 9 13 13 N 1.29940 * 109.24115 * 359.75038 * 10 9 8 14 14 C 1.46502 * 120.00111 * 96.03638 * 4 3 2 15 15 C 1.53045 * 109.45927 * 239.79129 * 14 4 3 16 16 C 1.53186 * 109.31065 * 178.61576 * 15 14 4 17 17 N 1.46921 * 108.77791 * 54.63701 * 16 15 14 18 18 C 1.36933 * 120.63186 * 126.41384 * 17 16 15 19 19 H 1.08000 * 120.00532 * 329.33399 * 18 17 16 20 20 C 1.38815 * 120.00276 * 149.33599 * 18 17 16 21 21 N 1.31622 * 119.99883 * 350.24524 * 20 18 17 22 22 Si 1.86793 * 120.00360 * 170.23796 * 20 18 17 23 23 H 1.48500 * 109.47152 * 60.00177 * 22 20 18 24 24 H 1.48501 * 109.47543 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47551 * 300.00481 * 22 20 18 26 26 C 1.46927 * 118.73821 * 306.38914 * 17 16 15 27 27 C 1.53042 * 109.45665 * 119.72716 * 14 4 3 28 28 H 1.08995 * 109.47346 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47500 * 300.00513 * 1 2 3 30 30 H 1.09003 * 109.47401 * 60.00162 * 1 2 3 31 31 H 1.08998 * 109.47533 * 239.99996 * 2 1 3 32 32 H 1.09003 * 109.47401 * 119.99838 * 2 1 3 33 33 H 1.08998 * 109.46786 * 59.99538 * 3 2 1 34 34 H 1.09003 * 109.46717 * 300.00257 * 3 2 1 35 35 H 1.08005 * 126.52027 * 0.02562 * 8 7 5 36 36 H 1.08997 * 109.47283 * 30.02525 * 11 10 9 37 37 H 1.08998 * 109.47030 * 150.02867 * 11 10 9 38 38 H 1.09000 * 109.47403 * 300.00090 * 12 11 10 39 39 H 1.08998 * 109.47302 * 60.00198 * 12 11 10 40 40 H 1.08997 * 109.46922 * 180.02562 * 12 11 10 41 41 H 1.08991 * 109.45959 * 359.75176 * 14 4 3 42 42 H 1.09003 * 109.50035 * 298.56668 * 15 14 4 43 43 H 1.09004 * 109.49671 * 58.66188 * 15 14 4 44 44 H 1.09003 * 109.58749 * 294.84620 * 16 15 14 45 45 H 1.09002 * 109.70473 * 174.49559 * 16 15 14 46 46 H 0.96998 * 120.00179 * 180.02562 * 21 20 18 47 47 H 1.09001 * 109.58900 * 293.82029 * 26 17 16 48 48 H 1.09003 * 109.70355 * 173.46741 * 26 17 16 49 49 H 1.08996 * 109.49525 * 301.33170 * 27 14 4 50 50 H 1.08997 * 109.49889 * 61.43742 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1793 1.3252 1.1605 6 8 5.3929 1.2464 1.1535 7 6 3.4458 1.2921 2.4388 8 6 3.9927 1.2891 3.6849 9 8 2.9745 1.2552 4.5592 10 6 1.8271 1.2383 3.8662 11 6 0.4455 1.1992 4.4667 12 6 0.0109 -0.2561 4.6517 13 7 2.0944 1.2658 2.5949 14 6 4.2370 1.5761 -1.2626 15 6 5.1206 0.3442 -1.4724 16 6 5.8579 0.4714 -2.8090 17 7 6.5868 1.7469 -2.8276 18 6 7.9282 1.7801 -3.1007 19 1 8.5559 0.9451 -2.8268 20 6 8.4813 2.8871 -3.7297 21 7 7.6982 3.8165 -4.2351 22 14 10.3369 3.0579 -3.8586 23 1 10.8891 1.9039 -4.6127 24 1 10.6699 4.3188 -4.5690 25 1 10.9273 3.0871 -2.4964 26 6 5.8489 2.9863 -2.5481 27 6 5.1116 2.8310 -1.2142 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 5.0456 1.3108 3.9249 36 1 0.4555 1.7011 5.4342 37 1 -0.2541 1.7057 3.8018 38 1 0.0009 -0.7581 3.6842 39 1 0.7106 -0.7625 5.3166 40 1 -0.9885 -0.2844 5.0856 41 1 3.5282 1.6589 -2.0865 42 1 5.8461 0.2745 -0.6618 43 1 4.4994 -0.5515 -1.4832 44 1 5.1379 0.4500 -3.6271 45 1 6.5619 -0.3534 -2.9203 46 1 8.0847 4.5899 -4.6749 47 1 5.1281 3.1701 -3.3448 48 1 6.5453 3.8225 -2.4855 49 1 4.4840 3.7053 -1.0415 50 1 5.8371 2.7379 -0.4062 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566697126.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:04 Heat of formation + Delta-G solvation = -9.344238 kcal Electronic energy + Delta-G solvation = -30585.035631 eV Core-core repulsion = 26614.009795 eV Total energy + Delta-G solvation = -3971.025836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -44.47057 -41.30140 -38.70791 -37.28207 -35.98720 -35.01855 -34.59058 -33.43639 -31.79636 -31.32955 -30.37506 -27.38871 -26.99069 -25.30342 -25.15939 -23.87586 -23.49532 -22.61270 -22.13883 -21.02672 -20.38675 -18.94815 -18.29660 -17.81517 -17.42247 -17.29369 -16.76150 -16.03249 -15.77948 -15.66012 -15.52838 -15.37090 -15.32511 -14.93813 -14.75585 -14.46016 -14.35272 -14.12969 -13.92717 -13.53477 -13.31935 -13.15001 -13.01039 -12.77032 -12.64144 -12.59357 -12.57822 -12.41356 -12.26841 -12.13336 -12.02343 -11.98768 -11.84615 -11.69207 -11.57121 -11.38109 -10.99929 -10.80757 -10.55526 -10.08091 -9.53372 -8.64679 -7.87178 -5.37330 0.08049 0.99501 1.44129 1.47543 1.54001 1.58500 1.93505 2.22996 2.49845 2.81692 3.28113 3.50583 3.67172 3.79923 3.95233 4.03459 4.10759 4.25279 4.27498 4.30297 4.32224 4.39110 4.48953 4.52756 4.57867 4.60012 4.64524 4.67007 4.81461 4.87705 4.89142 4.93752 5.01432 5.03839 5.04129 5.08925 5.14336 5.17520 5.30661 5.32725 5.40356 5.42645 5.51361 5.57185 5.61690 5.68410 5.79586 6.35919 6.40999 6.54702 7.11988 7.15048 7.84353 8.36904 9.18629 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020456 B = 0.002946 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.483958 B = 9501.254926 C =10273.945801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.119 4.119 3 C 0.099 3.901 4 N -0.591 5.591 5 C 0.589 3.411 6 O -0.564 6.564 7 C -0.090 4.090 8 C 0.017 3.983 9 O -0.195 6.195 10 C 0.199 3.801 11 C -0.025 4.025 12 C -0.148 4.148 13 N -0.461 5.461 14 C 0.168 3.832 15 C -0.132 4.132 16 C 0.149 3.851 17 N -0.610 5.610 18 C -0.264 4.264 19 H 0.059 0.941 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.282 1.282 26 C 0.186 3.814 27 C -0.137 4.137 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.244 0.756 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.025 0.975 45 H 0.052 0.948 46 H 0.251 0.749 47 H 0.005 0.995 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.615 -6.438 19.292 29.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.158 4.158 3 C -0.023 4.023 4 N -0.320 5.320 5 C 0.377 3.623 6 O -0.443 6.443 7 C -0.208 4.208 8 C -0.058 4.058 9 O -0.082 6.082 10 C -0.010 4.010 11 C -0.063 4.063 12 C -0.206 4.206 13 N -0.191 5.191 14 C 0.066 3.934 15 C -0.172 4.172 16 C 0.023 3.977 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.077 0.923 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.199 1.199 24 H -0.215 1.215 25 H -0.208 1.208 26 C 0.059 3.941 27 C -0.177 4.177 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.096 0.904 35 H 0.260 0.740 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.042 0.958 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.023 0.977 48 H 0.075 0.925 49 H 0.077 0.923 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.409 -6.338 18.696 29.121 hybrid contribution 2.045 0.286 -0.048 2.066 sum -19.364 -6.052 18.648 27.556 Atomic orbital electron populations 1.21566 0.93184 1.02028 1.02475 1.21677 0.97662 0.95948 1.00482 1.22280 0.76683 0.98591 1.04720 1.48099 1.08233 1.70341 1.05352 1.17229 0.85781 0.76413 0.82894 1.90821 1.14444 1.51905 1.87141 1.21649 0.90741 1.13618 0.94838 1.25554 0.94383 0.99300 0.86519 1.84412 1.15588 1.69189 1.38968 1.27452 0.90260 0.97886 0.85443 1.20413 0.82357 1.00701 1.02850 1.21778 1.03018 0.93397 1.02368 1.70903 1.12171 1.18840 1.17176 1.20909 0.93075 0.94935 0.84525 1.22247 0.98900 0.96871 0.99131 1.20966 0.94233 0.88335 0.94170 1.44231 1.05631 1.02103 1.81355 1.19439 0.84834 1.03942 1.31198 0.92301 1.25886 1.02238 0.98618 0.97714 1.70110 1.34920 1.12019 1.41072 0.85303 0.80242 0.77048 0.77603 1.19873 1.21462 1.20848 1.20519 0.93099 0.89674 0.90778 1.22362 0.98647 0.96742 0.99976 0.92347 0.91441 0.92352 0.93637 0.93403 0.86744 0.90380 0.74042 0.86655 0.86012 0.92802 0.92791 0.88560 0.88902 0.92426 0.91274 0.95753 0.92956 0.93982 0.97657 0.92461 0.92287 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 9.91 71.98 0.71 -1.34 16 2 C -0.12 -2.57 5.78 30.59 0.18 -2.39 16 3 C 0.10 2.40 4.98 86.38 0.43 2.83 16 4 N -0.59 -18.89 2.44 -801.52 -1.95 -20.85 16 5 C 0.59 20.32 7.04 86.66 0.61 20.93 16 6 O -0.56 -23.78 13.16 -4.08 -0.05 -23.83 16 7 C -0.09 -2.44 6.53 40.41 0.26 -2.18 16 8 C 0.02 0.37 11.95 67.32 0.80 1.17 16 9 O -0.20 -3.68 10.73 0.39 0.00 -3.67 16 10 C 0.20 3.33 7.56 88.39 0.67 3.99 16 11 C -0.03 -0.18 6.56 29.85 0.20 0.01 16 12 C -0.15 -0.94 9.89 71.98 0.71 -0.23 16 13 N -0.46 -10.05 6.73 -293.03 -1.97 -12.02 16 14 C 0.17 6.24 2.51 45.02 0.11 6.35 16 15 C -0.13 -5.26 5.26 30.67 0.16 -5.10 16 16 C 0.15 6.77 6.52 86.36 0.56 7.34 16 17 N -0.61 -33.27 2.99 -699.10 -2.09 -35.36 16 18 C -0.26 -15.62 9.59 84.03 0.81 -14.82 16 19 H 0.06 3.44 7.85 -2.91 -0.02 3.42 16 20 C -0.05 -2.91 5.08 84.86 0.43 -2.48 16 21 N -0.94 -57.26 10.94 21.65 0.24 -57.03 16 22 Si 0.97 47.26 29.56 68.60 2.03 49.29 16 23 H -0.27 -12.77 7.11 99.48 0.71 -12.07 16 24 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 26 C 0.19 9.69 5.26 86.36 0.45 10.14 16 27 C -0.14 -6.01 5.27 30.67 0.16 -5.85 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.16 7.21 -2.39 -0.02 1.15 16 33 H 0.12 2.69 5.20 -2.39 -0.01 2.68 16 34 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 35 H 0.24 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.09 3.19 7.72 -2.39 -0.02 3.17 16 42 H 0.06 2.65 6.07 -2.39 -0.01 2.64 16 43 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 44 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 2.35 7.93 -2.39 -0.02 2.34 16 46 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 47 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 48 H 0.06 3.39 6.02 -2.39 -0.01 3.37 16 49 H 0.06 2.35 8.14 -2.39 -0.02 2.34 16 50 H 0.05 2.40 6.37 -2.39 -0.02 2.38 16 Total: -1.00 -74.66 391.90 4.39 -70.27 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.92 Total: 14.82 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 7.26 Total: 18.39 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -5.78 Total: -125.26 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.05 Total: -27.51 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -74.66 4.39 -70.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566697126.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.928 kcal (2) G-P(sol) polarization free energy of solvation -74.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds