Wall clock time and date at job start Tue Mar 31 2020 19:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46814 * 2 1 4 4 N 1.46503 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00070 * 275.41941 * 4 3 2 6 6 O 1.21683 * 120.00249 * 185.59278 * 5 4 3 7 7 C 1.46725 * 119.99911 * 5.58966 * 5 4 3 8 8 O 1.35340 * 126.64159 * 355.13109 * 7 5 4 9 9 C 1.33666 * 107.68659 * 179.97438 * 8 7 5 10 10 N 1.30622 * 109.14975 * 0.02562 * 9 8 7 11 11 C 1.33687 * 108.99713 * 359.76351 * 10 9 8 12 12 C 1.50702 * 126.27630 * 180.25546 * 11 10 9 13 13 C 1.53001 * 109.47373 * 270.14223 * 12 11 10 14 14 C 1.46501 * 119.99975 * 95.41299 * 4 3 2 15 15 C 1.53078 * 109.44903 * 119.79381 * 14 4 3 16 16 C 1.53196 * 109.29024 * 181.24314 * 15 14 4 17 17 N 1.46928 * 108.89391 * 305.57394 * 16 15 14 18 18 C 1.36928 * 120.62896 * 233.51590 * 17 16 15 19 19 H 1.08002 * 119.99964 * 144.69449 * 18 17 16 20 20 C 1.38818 * 120.00634 * 324.69409 * 18 17 16 21 21 N 1.31621 * 119.99380 * 4.38414 * 20 18 17 22 22 Si 1.86794 * 120.00382 * 184.37980 * 20 18 17 23 23 H 1.48506 * 109.47006 * 60.00079 * 22 20 18 24 24 H 1.48501 * 109.47145 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47525 * 300.00460 * 22 20 18 26 26 C 1.46928 * 118.73451 * 53.54103 * 17 16 15 27 27 C 1.53037 * 109.46159 * 240.00180 * 14 4 3 28 28 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47339 * 300.00521 * 1 2 3 30 30 H 1.09001 * 109.46601 * 60.00534 * 1 2 3 31 31 H 1.08994 * 109.47339 * 239.99479 * 2 1 3 32 32 H 1.09001 * 109.46601 * 119.99466 * 2 1 3 33 33 H 1.08994 * 109.47593 * 59.99635 * 3 2 1 34 34 H 1.09001 * 109.47100 * 299.99161 * 3 2 1 35 35 H 1.07994 * 125.43130 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46912 * 30.14685 * 12 11 10 37 37 H 1.09004 * 109.46835 * 150.13626 * 12 11 10 38 38 H 1.08991 * 109.47144 * 59.99521 * 13 12 11 39 39 H 1.08996 * 109.47150 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46651 * 299.99850 * 13 12 11 41 41 H 1.08998 * 109.46062 * 359.97438 * 14 4 3 42 42 H 1.08995 * 109.39201 * 61.36783 * 15 14 4 43 43 H 1.08997 * 109.62022 * 301.25654 * 15 14 4 44 44 H 1.09007 * 109.58211 * 185.71761 * 16 15 14 45 45 H 1.09002 * 109.58443 * 65.43714 * 16 15 14 46 46 H 0.96994 * 119.99818 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58548 * 66.18103 * 26 17 16 48 48 H 1.08998 * 109.57860 * 186.45817 * 26 17 16 49 49 H 1.09007 * 109.49789 * 58.66036 * 27 14 4 50 50 H 1.09003 * 109.49957 * 298.56776 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1784 1.3325 1.1629 6 8 5.3909 1.4346 1.1756 7 6 3.4495 1.0898 2.4129 8 8 2.1058 1.0456 2.5689 9 6 1.8546 0.8001 3.8586 10 7 2.9859 0.6919 4.5025 11 6 3.9946 0.8601 3.6414 12 6 5.4647 0.8079 3.9688 13 6 5.9524 2.2072 4.3495 14 6 4.2380 1.5621 -1.2622 15 6 5.1139 2.8170 -1.2263 16 6 5.8549 2.9553 -2.5599 17 7 6.5892 1.7111 -2.8275 18 6 7.9308 1.7377 -3.1002 19 1 8.5685 0.9386 -2.7520 20 6 8.4713 2.7916 -3.8243 21 7 7.7113 3.8075 -4.1743 22 14 10.2770 2.7678 -4.3016 23 1 10.5507 1.5760 -5.1443 24 1 10.6037 3.9995 -5.0642 25 1 11.1126 2.7093 -3.0754 26 6 5.8563 0.4380 -2.7974 27 6 5.1179 0.3257 -1.4600 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 0.8727 0.7061 4.2983 36 1 5.6268 0.1268 4.8042 37 1 6.0183 0.4542 3.0990 38 1 5.3988 2.5608 5.2192 39 1 7.0158 2.1695 4.5859 40 1 5.7902 2.8883 3.5140 41 1 3.5299 1.6396 -2.0872 42 1 5.8372 2.7305 -0.4155 43 1 4.4888 3.6952 -1.0646 44 1 6.5557 3.7884 -2.5038 45 1 5.1368 3.1352 -3.3600 46 1 8.0889 4.5441 -4.6799 47 1 5.1366 0.4113 -3.6156 48 1 6.5578 -0.3898 -2.9006 49 1 4.4940 -0.5682 -1.4628 50 1 5.8428 0.2613 -0.6485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566699455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:53 Heat of formation + Delta-G solvation = 6.611139 kcal Electronic energy + Delta-G solvation = -31082.421215 eV Core-core repulsion = 27112.087256 eV Total energy + Delta-G solvation = -3970.333959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -43.60697 -40.02689 -37.15168 -36.38039 -35.37624 -33.51130 -32.91762 -32.06433 -30.35788 -29.72656 -29.13582 -26.31675 -25.48757 -24.20112 -23.56014 -22.51256 -22.16054 -21.70922 -21.03873 -19.82640 -19.12645 -17.40311 -17.01200 -16.93429 -16.46925 -15.82363 -15.16034 -14.94962 -14.64831 -14.60154 -14.32278 -13.93599 -13.72267 -13.56889 -13.44730 -13.22444 -12.95533 -12.76142 -12.65391 -12.47532 -12.27458 -11.90491 -11.55894 -11.51882 -11.41281 -11.26088 -11.20991 -11.03606 -10.85669 -10.82308 -10.73692 -10.71648 -10.34746 -10.11384 -9.97393 -9.72832 -9.63765 -9.36528 -9.06407 -8.46417 -8.28317 -6.49405 -5.72616 -3.24857 0.76441 2.30665 2.36027 3.07334 3.18817 3.42952 3.47116 3.48765 3.85243 4.43859 4.53510 4.59706 4.75847 4.85460 5.09860 5.14468 5.25203 5.31457 5.39107 5.39128 5.43210 5.46412 5.48756 5.54734 5.63722 5.67204 5.71692 5.83692 5.85398 5.90516 5.94228 6.02283 6.12888 6.17808 6.20394 6.29287 6.35952 6.39622 6.56758 6.63972 6.78988 6.87938 7.04227 7.07872 7.32811 7.48193 7.61133 7.84622 7.87829 8.19915 8.59782 9.30867 9.89777 10.49237 11.33441 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.003576 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.281069 B = 7827.807270 C = 9161.376326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.138 4.138 3 C 0.105 3.895 4 N -0.599 5.599 5 C 0.600 3.400 6 O -0.491 6.491 7 C -0.101 4.101 8 O -0.183 6.183 9 C 0.182 3.818 10 N -0.491 5.491 11 C 0.075 3.925 12 C -0.050 4.050 13 C -0.139 4.139 14 C 0.160 3.840 15 C -0.157 4.157 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.151 3.849 27 C -0.146 4.146 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.043 0.957 44 H 0.103 0.897 45 H 0.012 0.988 46 H 0.254 0.746 47 H 0.016 0.984 48 H 0.055 0.945 49 H 0.045 0.955 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.380 -5.761 13.885 22.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.177 4.177 3 C -0.018 4.018 4 N -0.330 5.330 5 C 0.386 3.614 6 O -0.367 6.367 7 C -0.156 4.156 8 O -0.069 6.069 9 C -0.043 4.043 10 N -0.219 5.219 11 C -0.049 4.049 12 C -0.088 4.088 13 C -0.196 4.196 14 C 0.059 3.941 15 C -0.197 4.197 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.080 0.920 20 C -0.190 4.190 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.024 3.976 27 C -0.186 4.186 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.267 0.733 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.121 0.879 45 H 0.030 0.970 46 H 0.064 0.936 47 H 0.033 0.967 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.664 -5.642 14.334 21.969 hybrid contribution 0.274 0.080 -0.822 0.870 sum -15.390 -5.562 13.512 21.221 Atomic orbital electron populations 1.21665 0.95123 1.01736 1.01835 1.21937 0.96121 0.97087 1.02510 1.21828 0.79506 0.97216 1.03226 1.48263 1.06562 1.71387 1.06835 1.16463 0.86189 0.78075 0.80688 1.90894 1.11734 1.49507 1.84574 1.23271 0.79992 1.13931 0.98378 1.84735 1.24436 1.67494 1.30270 1.28269 1.00339 0.97490 0.78202 1.70314 0.98082 1.19319 1.34236 1.22044 0.97307 0.98078 0.87482 1.20133 0.86134 0.99194 1.03338 1.21622 1.01033 0.95626 1.01362 1.21250 0.93208 0.97497 0.82107 1.22740 0.99056 0.94007 1.03908 1.20944 0.94243 0.91350 0.88943 1.43968 1.05584 1.00351 1.81465 1.19116 0.83605 1.07994 1.27238 0.91984 1.25291 0.98146 0.97949 0.97585 1.69871 1.34832 1.08982 1.41431 0.86359 0.84967 0.76915 0.78464 1.20911 1.21632 1.20912 1.20846 0.94146 0.90385 0.92208 1.22442 0.99078 0.95081 1.01976 0.92644 0.92661 0.92551 0.91535 0.92055 0.90053 0.89895 0.73349 0.90380 0.88208 0.93031 0.91676 0.92085 0.90296 0.90016 0.93834 0.87910 0.97008 0.93554 0.96661 0.92611 0.93598 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.72 16 2 C -0.14 -1.36 5.69 -26.73 -0.15 -1.51 16 3 C 0.11 1.18 4.97 -4.04 -0.02 1.16 16 4 N -0.60 -8.87 2.43 -167.56 -0.41 -9.28 16 5 C 0.60 9.63 7.01 -12.83 -0.09 9.54 16 6 O -0.49 -9.33 11.13 5.20 0.06 -9.27 16 7 C -0.10 -1.38 6.41 -36.84 -0.24 -1.61 16 8 O -0.18 -1.95 6.11 4.43 0.03 -1.92 16 9 C 0.18 1.58 13.21 52.25 0.69 2.27 16 10 N -0.49 -5.90 11.26 -10.88 -0.12 -6.02 16 11 C 0.07 1.01 6.41 -82.47 -0.53 0.48 16 12 C -0.05 -0.65 5.87 -27.88 -0.16 -0.81 16 13 C -0.14 -1.71 9.90 37.16 0.37 -1.34 16 14 C 0.16 2.78 2.50 -67.87 -0.17 2.61 16 15 C -0.16 -3.21 5.28 -26.59 -0.14 -3.35 16 16 C 0.17 4.19 5.26 -3.71 -0.02 4.17 16 17 N -0.59 -15.14 3.00 -172.31 -0.52 -15.66 16 18 C -0.25 -7.01 9.55 -15.06 -0.14 -7.15 16 19 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 20 C 0.01 0.24 5.32 -17.43 -0.09 0.15 16 21 N -0.91 -26.33 10.60 55.49 0.59 -25.74 16 22 Si 0.90 22.01 29.56 -169.99 -5.02 16.98 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 27 C -0.15 -2.70 5.27 -26.62 -0.14 -2.84 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.67 6.59 -51.93 -0.34 0.33 16 33 H 0.08 0.86 5.70 -51.93 -0.30 0.57 16 34 H 0.08 0.86 7.81 -51.93 -0.41 0.45 16 35 H 0.25 0.78 8.06 -52.49 -0.42 0.36 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.10 1.44 6.59 -51.93 -0.34 1.10 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.29 7.72 -51.93 -0.40 0.89 16 42 H 0.08 1.87 6.03 -51.93 -0.31 1.55 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.10 2.85 5.90 -51.93 -0.31 2.55 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 47 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 49 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 50 H 0.08 1.64 6.40 -51.93 -0.33 1.31 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -32.06 387.08 -8.25 -40.32 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -8.19 Total: 0.49 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -0.50 Total: 4.26 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: -0.46 Total: -56.69 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.06 -8.25 -40.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566699455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.926 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds