Wall clock time and date at job start Tue Mar 31 2020 19:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46814 * 2 1 4 4 N 1.46503 * 109.47114 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00070 * 275.41941 * 4 3 2 6 6 O 1.21683 * 120.00249 * 185.59278 * 5 4 3 7 7 C 1.46725 * 119.99911 * 5.58966 * 5 4 3 8 8 O 1.35340 * 126.64159 * 355.13109 * 7 5 4 9 9 C 1.33666 * 107.68659 * 179.97438 * 8 7 5 10 10 N 1.30622 * 109.14975 * 0.02562 * 9 8 7 11 11 C 1.33687 * 108.99713 * 359.76351 * 10 9 8 12 12 C 1.50702 * 126.27630 * 180.25546 * 11 10 9 13 13 C 1.53001 * 109.47373 * 270.14223 * 12 11 10 14 14 C 1.46501 * 119.99975 * 95.41299 * 4 3 2 15 15 C 1.53078 * 109.44903 * 119.79381 * 14 4 3 16 16 C 1.53196 * 109.29024 * 181.24314 * 15 14 4 17 17 N 1.46928 * 108.89391 * 305.57394 * 16 15 14 18 18 C 1.36928 * 120.62896 * 233.51590 * 17 16 15 19 19 H 1.08002 * 119.99964 * 144.69449 * 18 17 16 20 20 C 1.38818 * 120.00634 * 324.69409 * 18 17 16 21 21 N 1.31621 * 119.99380 * 4.38414 * 20 18 17 22 22 Si 1.86794 * 120.00382 * 184.37980 * 20 18 17 23 23 H 1.48506 * 109.47006 * 60.00079 * 22 20 18 24 24 H 1.48501 * 109.47145 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47525 * 300.00460 * 22 20 18 26 26 C 1.46928 * 118.73451 * 53.54103 * 17 16 15 27 27 C 1.53037 * 109.46159 * 240.00180 * 14 4 3 28 28 H 1.09005 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47339 * 300.00521 * 1 2 3 30 30 H 1.09001 * 109.46601 * 60.00534 * 1 2 3 31 31 H 1.08994 * 109.47339 * 239.99479 * 2 1 3 32 32 H 1.09001 * 109.46601 * 119.99466 * 2 1 3 33 33 H 1.08994 * 109.47593 * 59.99635 * 3 2 1 34 34 H 1.09001 * 109.47100 * 299.99161 * 3 2 1 35 35 H 1.07994 * 125.43130 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46912 * 30.14685 * 12 11 10 37 37 H 1.09004 * 109.46835 * 150.13626 * 12 11 10 38 38 H 1.08991 * 109.47144 * 59.99521 * 13 12 11 39 39 H 1.08996 * 109.47150 * 180.02562 * 13 12 11 40 40 H 1.09007 * 109.46651 * 299.99850 * 13 12 11 41 41 H 1.08998 * 109.46062 * 359.97438 * 14 4 3 42 42 H 1.08995 * 109.39201 * 61.36783 * 15 14 4 43 43 H 1.08997 * 109.62022 * 301.25654 * 15 14 4 44 44 H 1.09007 * 109.58211 * 185.71761 * 16 15 14 45 45 H 1.09002 * 109.58443 * 65.43714 * 16 15 14 46 46 H 0.96994 * 119.99818 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.58548 * 66.18103 * 26 17 16 48 48 H 1.08998 * 109.57860 * 186.45817 * 26 17 16 49 49 H 1.09007 * 109.49789 * 58.66036 * 27 14 4 50 50 H 1.09003 * 109.49957 * 298.56776 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1784 1.3325 1.1629 6 8 5.3909 1.4346 1.1756 7 6 3.4495 1.0898 2.4129 8 8 2.1058 1.0456 2.5689 9 6 1.8546 0.8001 3.8586 10 7 2.9859 0.6919 4.5025 11 6 3.9946 0.8601 3.6414 12 6 5.4647 0.8079 3.9688 13 6 5.9524 2.2072 4.3495 14 6 4.2380 1.5621 -1.2622 15 6 5.1139 2.8170 -1.2263 16 6 5.8549 2.9553 -2.5599 17 7 6.5892 1.7111 -2.8275 18 6 7.9308 1.7377 -3.1002 19 1 8.5685 0.9386 -2.7520 20 6 8.4713 2.7916 -3.8243 21 7 7.7113 3.8075 -4.1743 22 14 10.2770 2.7678 -4.3016 23 1 10.5507 1.5760 -5.1443 24 1 10.6037 3.9995 -5.0642 25 1 11.1126 2.7093 -3.0754 26 6 5.8563 0.4380 -2.7974 27 6 5.1179 0.3257 -1.4600 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 0.8727 0.7061 4.2983 36 1 5.6268 0.1268 4.8042 37 1 6.0183 0.4542 3.0990 38 1 5.3988 2.5608 5.2192 39 1 7.0158 2.1695 4.5859 40 1 5.7902 2.8883 3.5140 41 1 3.5299 1.6396 -2.0872 42 1 5.8372 2.7305 -0.4155 43 1 4.4888 3.6952 -1.0646 44 1 6.5557 3.7884 -2.5038 45 1 5.1368 3.1352 -3.3600 46 1 8.0889 4.5441 -4.6799 47 1 5.1366 0.4113 -3.6156 48 1 6.5578 -0.3898 -2.9006 49 1 4.4940 -0.5682 -1.4628 50 1 5.8428 0.2613 -0.6485 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566699455.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:51 Heat of formation + Delta-G solvation = -13.873898 kcal Electronic energy + Delta-G solvation = -31083.309512 eV Core-core repulsion = 27112.087256 eV Total energy + Delta-G solvation = -3971.222257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.48317 -41.29941 -38.70802 -37.57888 -36.36824 -34.99851 -33.89927 -33.49233 -31.92699 -31.41811 -30.39445 -27.39999 -26.98540 -25.47586 -24.55697 -23.83696 -23.81474 -22.72122 -22.12222 -21.16888 -20.54318 -18.92840 -18.25487 -17.89241 -17.49842 -17.26944 -16.77124 -16.02212 -15.93412 -15.62397 -15.47871 -15.41685 -15.25795 -14.93261 -14.75860 -14.46371 -14.34169 -14.12875 -13.97404 -13.71265 -13.34255 -13.11000 -12.93561 -12.77178 -12.66141 -12.60301 -12.49066 -12.34379 -12.22258 -12.14046 -12.04269 -11.96631 -11.81464 -11.77827 -11.58460 -11.41691 -11.27541 -10.80636 -10.50739 -10.07734 -9.59048 -8.54889 -7.85530 -5.41269 -0.18334 1.40287 1.45042 1.46143 1.48418 1.54906 1.96900 2.08075 2.50322 3.12496 3.28797 3.44257 3.65440 3.71106 3.92127 3.98731 4.01855 4.18709 4.26259 4.30460 4.32750 4.37703 4.38035 4.51238 4.53365 4.54590 4.66278 4.69269 4.80205 4.84075 4.87855 4.95244 4.97817 4.98408 5.06696 5.10018 5.16221 5.20217 5.23540 5.26633 5.33446 5.41410 5.48424 5.58255 5.62168 5.67355 5.83659 6.28644 6.47232 6.57452 7.00817 7.18912 7.86579 8.39960 9.17837 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014502 B = 0.003576 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.281069 B = 7827.807270 C = 9161.376326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.102 3.898 4 N -0.597 5.597 5 C 0.595 3.405 6 O -0.533 6.533 7 C -0.123 4.123 8 O -0.177 6.177 9 C 0.218 3.782 10 N -0.520 5.520 11 C 0.072 3.928 12 C -0.051 4.051 13 C -0.131 4.131 14 C 0.171 3.829 15 C -0.142 4.142 16 C 0.180 3.820 17 N -0.611 5.611 18 C -0.268 4.268 19 H 0.058 0.942 20 C -0.041 4.041 21 N -0.931 5.931 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.149 3.851 27 C -0.131 4.131 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.308 0.692 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.097 0.903 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.002 0.998 46 H 0.251 0.749 47 H 0.027 0.973 48 H 0.052 0.948 49 H 0.074 0.926 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.170 -6.786 15.142 25.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C -0.020 4.020 4 N -0.327 5.327 5 C 0.383 3.617 6 O -0.412 6.412 7 C -0.178 4.178 8 O -0.064 6.064 9 C -0.007 4.007 10 N -0.248 5.248 11 C -0.051 4.051 12 C -0.089 4.089 13 C -0.189 4.189 14 C 0.069 3.931 15 C -0.182 4.182 16 C 0.054 3.946 17 N -0.335 5.335 18 C -0.398 4.398 19 H 0.075 0.925 20 C -0.237 4.237 21 N -0.577 5.577 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.023 3.977 27 C -0.171 4.171 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.322 0.678 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.055 0.945 41 H 0.115 0.885 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.020 0.980 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.496 -6.693 15.609 25.111 hybrid contribution 1.034 0.369 -1.101 1.554 sum -17.463 -6.325 14.508 23.567 Atomic orbital electron populations 1.21634 0.92897 1.02477 1.02800 1.21859 0.97898 0.95638 1.01548 1.22099 0.76922 0.98579 1.04369 1.48187 1.08044 1.71026 1.05485 1.16751 0.85951 0.77329 0.81648 1.90879 1.13620 1.51271 1.85404 1.22644 0.81225 1.16595 0.97307 1.84723 1.22650 1.67717 1.31311 1.29587 1.01441 0.92676 0.76970 1.70351 0.98689 1.21320 1.34480 1.22129 0.97736 0.97391 0.87859 1.20093 0.86335 0.99611 1.02865 1.21550 1.01858 0.94843 1.00648 1.20932 0.93129 0.95029 0.84059 1.22446 0.98865 0.96517 1.00328 1.20657 0.93266 0.90033 0.90613 1.44202 1.05341 1.01935 1.81975 1.19385 0.85093 1.07987 1.27333 0.92476 1.26004 1.02278 0.97633 0.97791 1.70061 1.36376 1.09306 1.41939 0.85352 0.80128 0.76954 0.78044 1.20020 1.21547 1.20633 1.20967 0.94200 0.88414 0.94099 1.22219 0.98771 0.96970 0.99091 0.92029 0.91284 0.92040 0.92529 0.93032 0.89015 0.88637 0.67777 0.88949 0.90418 0.91980 0.90733 0.94498 0.88476 0.92744 0.92546 0.91791 0.97954 0.93962 0.95535 0.92950 0.90792 0.93015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.91 71.98 0.71 -0.85 16 2 C -0.13 -2.22 5.69 30.59 0.17 -2.05 16 3 C 0.10 2.02 4.97 86.38 0.43 2.45 16 4 N -0.60 -17.13 2.43 -802.25 -1.95 -19.08 16 5 C 0.60 19.22 7.01 86.46 0.61 19.83 16 6 O -0.53 -21.25 11.13 -4.30 -0.05 -21.30 16 7 C -0.12 -3.23 6.41 24.05 0.15 -3.08 16 8 O -0.18 -3.22 6.11 -7.07 -0.04 -3.26 16 9 C 0.22 2.88 13.21 130.42 1.72 4.60 16 10 N -0.52 -11.15 11.26 -303.12 -3.41 -14.56 16 11 C 0.07 1.89 6.41 41.83 0.27 2.15 16 12 C -0.05 -1.34 5.87 29.85 0.18 -1.16 16 13 C -0.13 -3.29 9.90 71.98 0.71 -2.58 16 14 C 0.17 5.84 2.50 45.03 0.11 5.95 16 15 C -0.14 -5.94 5.28 30.69 0.16 -5.78 16 16 C 0.18 9.16 5.26 86.36 0.45 9.62 16 17 N -0.61 -32.30 3.00 -699.08 -2.10 -34.40 16 18 C -0.27 -15.50 9.55 84.04 0.80 -14.70 16 19 H 0.06 3.28 7.83 -2.91 -0.02 3.26 16 20 C -0.04 -2.39 5.32 84.86 0.45 -1.94 16 21 N -0.93 -55.83 10.60 21.65 0.23 -55.60 16 22 Si 0.97 46.25 29.56 68.60 2.03 48.28 16 23 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 C 0.15 6.45 6.52 86.36 0.56 7.01 16 27 C -0.13 -4.84 5.27 30.67 0.16 -4.68 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.99 6.59 -2.39 -0.02 0.97 16 33 H 0.09 1.66 5.70 -2.39 -0.01 1.65 16 34 H 0.10 1.68 7.81 -2.39 -0.02 1.66 16 35 H 0.31 -0.05 8.06 -2.91 -0.02 -0.07 16 36 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.38 6.59 -2.38 -0.02 2.37 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.10 3.01 7.72 -2.39 -0.02 2.99 16 42 H 0.05 2.61 6.03 -2.39 -0.01 2.60 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.06 3.74 5.90 -2.38 -0.01 3.73 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 46 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 47 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16 49 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 50 H 0.05 2.22 6.40 -2.39 -0.02 2.21 16 Total: -1.00 -73.80 387.08 3.29 -70.51 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.93 Total: 14.62 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 7.66 Total: 14.80 kcal Atomic # 7 Polarization: -116.41 SS G_CDS: -7.23 Total: -123.64 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.09 Total: -24.57 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -73.80 3.29 -70.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566699455.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.635 kcal (2) G-P(sol) polarization free energy of solvation -73.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds