Wall clock time and date at job start Tue Mar 31 2020 18:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46517 * 2 1 4 4 H 1.08998 * 109.47441 * 55.00139 * 3 2 1 5 5 C 1.53007 * 109.46981 * 174.99955 * 3 2 1 6 6 O 1.42901 * 109.47147 * 294.99817 * 3 2 1 7 7 C 1.35688 * 116.99475 * 150.00316 * 6 3 2 8 8 C 1.38895 * 119.62034 * 179.97438 * 7 6 3 9 9 C 1.39573 * 118.94609 * 179.97438 * 8 7 6 10 10 C 1.48165 * 120.89179 * 179.97438 * 9 8 7 11 11 O 1.21518 * 119.99568 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00104 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99884 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47451 * 35.00382 * 13 12 10 15 15 C 1.53000 * 109.47521 * 274.99975 * 13 12 10 16 16 C 1.53002 * 109.47356 * 155.00169 * 13 12 10 17 17 N 1.46510 * 109.46743 * 305.00108 * 16 13 12 18 18 C 1.46494 * 119.99803 * 269.99821 * 17 16 13 19 19 C 1.36938 * 119.99996 * 89.99895 * 17 16 13 20 20 H 1.08001 * 119.99884 * 22.34516 * 19 17 16 21 21 C 1.38808 * 120.00037 * 202.34238 * 19 17 16 22 22 N 1.31625 * 119.99962 * 11.25852 * 21 19 17 23 23 Si 1.86800 * 120.00125 * 191.25865 * 21 19 17 24 24 H 1.48494 * 109.47131 * 59.99744 * 23 21 19 25 25 H 1.48500 * 109.47042 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47087 * 299.99914 * 23 21 19 27 27 C 1.39961 * 118.22016 * 0.02562 * 9 8 7 28 28 C 1.37979 * 119.12939 * 359.97438 * 27 9 8 29 29 N 1.31904 * 120.98062 * 359.74109 * 28 27 9 30 30 H 1.09008 * 109.47282 * 299.99593 * 1 2 3 31 31 H 1.08996 * 109.47789 * 60.00331 * 1 2 3 32 32 H 1.09002 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47176 * 240.00281 * 2 1 3 34 34 H 1.08996 * 109.46892 * 119.99830 * 2 1 3 35 35 H 1.08993 * 109.47115 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46883 * 59.99842 * 5 3 2 37 37 H 1.08999 * 109.46743 * 300.00272 * 5 3 2 38 38 H 1.08002 * 120.52370 * 0.02562 * 8 7 6 39 39 H 0.96999 * 120.00300 * 0.02562 * 12 10 9 40 40 H 1.09005 * 109.46988 * 60.00070 * 15 13 12 41 41 H 1.08996 * 109.47487 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47091 * 300.00628 * 15 13 12 43 43 H 1.09000 * 109.47085 * 64.99158 * 16 13 12 44 44 H 1.08999 * 109.47650 * 185.00133 * 16 13 12 45 45 H 1.09001 * 109.47556 * 94.24682 * 18 17 16 46 46 H 1.09003 * 109.46977 * 214.24895 * 18 17 16 47 47 H 1.09005 * 109.47381 * 334.24674 * 18 17 16 48 48 H 0.97001 * 120.00009 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.43669 * 179.97438 * 27 9 8 50 50 H 1.08004 * 119.50690 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.4504 3.4209 -1.1756 8 6 1.0812 4.0973 -2.3312 9 6 0.8668 5.4750 -2.2682 10 6 0.4724 6.2394 -3.4746 11 8 0.3319 5.6671 -4.5374 12 7 0.2704 7.5694 -3.3935 13 6 -0.1190 8.3252 -4.5865 14 1 -0.7673 7.7103 -5.2108 15 6 1.1329 8.7116 -5.3768 16 6 -0.8677 9.5916 -4.1662 17 7 -1.9994 9.2282 -3.3096 18 6 -3.3080 8.9471 -3.9051 19 6 -1.8338 9.1512 -1.9525 20 1 -1.0241 9.6839 -1.4762 21 6 -2.7068 8.3885 -1.1889 22 7 -3.5508 7.5676 -1.7774 23 14 -2.6840 8.5272 0.6738 24 1 -2.9889 9.9255 1.0698 25 1 -3.7042 7.6152 1.2506 26 1 -1.3404 8.1506 1.1818 27 6 1.0354 6.1154 -1.0352 28 6 1.4039 5.3683 0.0648 29 7 1.5926 4.0664 -0.0309 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9280 2.4721 0.1253 36 1 3.9994 0.9055 -0.7161 37 1 3.8531 0.9572 1.0571 38 1 0.9613 3.5654 -3.2635 39 1 0.3837 8.0264 -2.5454 40 1 1.6663 7.8095 -5.6763 41 1 0.8431 9.2744 -6.2641 42 1 1.7811 9.3266 -4.7526 43 1 -0.1923 10.2475 -3.6168 44 1 -1.2346 10.1082 -5.0531 45 1 -3.4092 7.8745 -4.0704 46 1 -4.0944 9.2866 -3.2309 47 1 -3.3942 9.4711 -4.8570 48 1 -4.1611 7.0349 -1.2439 49 1 0.8792 7.1803 -0.9458 50 1 1.5360 5.8563 1.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569145357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:32 Heat of formation + Delta-G solvation = -23.979505 kcal Electronic energy + Delta-G solvation = -30042.923374 eV Core-core repulsion = 26071.262905 eV Total energy + Delta-G solvation = -3971.660469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.69234 -39.27319 -37.99971 -36.33216 -34.32526 -34.03671 -32.59996 -31.31702 -30.50674 -29.93331 -29.59590 -26.21516 -25.65129 -24.91424 -23.96843 -23.08039 -22.06951 -21.31765 -20.27405 -19.79116 -18.52780 -17.12135 -16.70341 -16.20954 -15.72661 -15.52614 -15.30965 -14.90120 -14.63827 -14.44569 -14.12899 -13.93084 -13.83588 -13.64787 -13.45862 -13.24952 -13.08955 -12.89916 -12.59554 -12.24527 -12.03984 -11.93841 -11.87998 -11.71395 -11.43634 -11.32699 -11.24293 -10.88653 -10.84871 -10.76396 -10.72133 -10.44470 -10.29840 -10.12431 -9.88168 -9.79411 -9.66540 -9.29102 -8.61989 -8.38713 -8.35088 -6.83022 -5.78915 -3.25777 0.97411 1.32020 2.96837 3.27353 3.33069 3.36371 3.38767 3.75904 4.12346 4.35741 4.40737 4.59104 4.81119 4.94169 4.96942 5.16066 5.19133 5.26293 5.27573 5.30080 5.42208 5.44194 5.46839 5.59411 5.65127 5.77392 5.78578 5.80115 5.86644 5.93764 5.94502 6.01698 6.03846 6.13023 6.17958 6.20918 6.30197 6.41554 6.46214 6.51231 6.72060 6.84482 7.17609 7.34471 7.35319 7.64796 7.76486 7.91372 8.16939 8.31460 8.78689 9.15184 9.79328 10.29603 11.24983 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003680 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.209569 B = 7607.373050 C = 8826.003160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C 0.084 3.916 4 H 0.090 0.910 5 C -0.168 4.168 6 O -0.299 6.299 7 C 0.315 3.685 8 C -0.138 4.138 9 C -0.038 4.038 10 C 0.559 3.441 11 O -0.549 6.549 12 N -0.674 5.674 13 C 0.117 3.883 14 H 0.079 0.921 15 C -0.160 4.160 16 C 0.142 3.858 17 N -0.598 5.598 18 C 0.164 3.836 19 C -0.263 4.263 20 H 0.066 0.934 21 C 0.011 3.989 22 N -0.896 5.896 23 Si 0.894 3.106 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.280 1.280 27 C -0.169 4.169 28 C 0.133 3.867 29 N -0.531 5.531 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.150 0.850 39 H 0.405 0.595 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.054 0.946 45 H 0.028 0.972 46 H 0.044 0.956 47 H -0.004 1.004 48 H 0.253 0.747 49 H 0.145 0.855 50 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.106 -7.003 2.628 14.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.028 3.972 4 H 0.108 0.892 5 C -0.225 4.225 6 O -0.206 6.206 7 C 0.136 3.864 8 C -0.159 4.159 9 C -0.049 4.049 10 C 0.344 3.656 11 O -0.428 6.428 12 N -0.324 5.324 13 C 0.010 3.990 14 H 0.097 0.903 15 C -0.219 4.219 16 C 0.013 3.987 17 N -0.320 5.320 18 C 0.019 3.981 19 C -0.392 4.392 20 H 0.083 0.917 21 C -0.189 4.189 22 N -0.540 5.540 23 Si 0.724 3.276 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.190 4.190 28 C -0.022 4.022 29 N -0.255 5.255 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.167 0.833 39 H 0.242 0.758 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.063 0.937 47 H 0.015 0.985 48 H 0.064 0.936 49 H 0.162 0.838 50 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 12.029 -8.138 2.457 14.730 hybrid contribution -0.358 0.631 1.056 1.281 sum 11.671 -7.508 3.514 14.315 Atomic orbital electron populations 1.21767 0.95124 1.01711 1.02620 1.21678 0.96885 0.94335 1.02877 1.22392 0.95044 0.93077 0.86687 0.89197 1.22207 0.95241 1.02867 1.02215 1.86290 1.82669 1.16024 1.35655 1.19564 0.92758 0.84595 0.89474 1.21073 1.02969 0.93241 0.98635 1.20254 0.96725 0.93342 0.94551 1.17935 0.77799 0.82640 0.87200 1.90709 1.52807 1.69617 1.29657 1.45625 1.66673 1.06630 1.13437 1.21912 0.95030 0.95878 0.86226 0.90306 1.22162 0.98579 1.01194 0.99975 1.21204 0.90106 0.92847 0.94534 1.43879 1.04380 1.80963 1.02824 1.20804 0.86635 0.98024 0.92641 1.19016 1.14255 1.23878 0.82071 0.91653 1.24989 0.99649 0.96641 0.97594 1.70055 1.24054 1.26068 1.33840 0.86510 0.77586 0.77455 0.86038 1.21056 1.21697 1.20666 1.22242 1.01762 1.02312 0.92692 1.22295 0.93676 0.87650 0.98610 1.67071 1.20349 1.11713 1.26406 0.92740 0.91943 0.92551 0.91018 0.90218 0.91937 0.92085 0.91290 0.83264 0.75826 0.92873 0.92076 0.92929 0.93270 0.92786 0.95383 0.93678 0.98545 0.93630 0.83763 0.82068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.81 37.16 0.36 -1.25 16 2 C -0.12 -1.15 5.64 -26.73 -0.15 -1.30 16 3 C 0.08 0.99 2.49 -26.73 -0.07 0.92 16 4 H 0.09 1.14 6.97 -51.93 -0.36 0.77 16 5 C -0.17 -1.68 9.53 37.16 0.35 -1.33 16 6 O -0.30 -4.38 9.30 -18.77 -0.17 -4.55 16 7 C 0.31 5.08 7.45 -17.16 -0.13 4.95 16 8 C -0.14 -2.39 9.61 -38.84 -0.37 -2.76 16 9 C -0.04 -0.69 5.91 -104.68 -0.62 -1.30 16 10 C 0.56 11.27 7.76 -12.19 -0.09 11.17 16 11 O -0.55 -12.46 16.10 5.35 0.09 -12.37 16 12 N -0.67 -12.74 4.44 -54.65 -0.24 -12.98 16 13 C 0.12 2.13 2.88 -67.93 -0.20 1.94 16 14 H 0.08 1.67 7.58 -51.93 -0.39 1.27 16 15 C -0.16 -2.35 9.48 37.16 0.35 -1.99 16 16 C 0.14 2.62 5.36 -4.04 -0.02 2.60 16 17 N -0.60 -13.83 2.82 -181.11 -0.51 -14.34 16 18 C 0.16 3.92 9.01 59.84 0.54 4.46 16 19 C -0.26 -6.43 8.02 -15.06 -0.12 -6.55 16 20 H 0.07 1.52 7.84 -52.49 -0.41 1.11 16 21 C 0.01 0.29 5.13 -17.43 -0.09 0.20 16 22 N -0.90 -25.03 10.58 55.49 0.59 -24.45 16 23 Si 0.89 20.38 29.57 -169.99 -5.03 15.36 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.17 -2.71 9.61 -39.03 -0.38 -3.08 16 28 C 0.13 1.94 11.17 -17.62 -0.20 1.74 16 29 N -0.53 -8.18 8.61 -13.38 -0.12 -8.30 16 30 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.76 7.82 -51.93 -0.41 0.36 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.15 2.59 7.74 -52.49 -0.41 2.19 16 39 H 0.40 7.37 5.54 -40.82 -0.23 7.14 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.85 8.03 -51.93 -0.42 0.43 16 44 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 45 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 46 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 47 H 0.00 -0.08 7.84 -51.93 -0.41 -0.49 16 48 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.14 2.17 6.53 -52.49 -0.34 1.83 16 50 H 0.16 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 407.77 15.07 6.15 6.15 Total: -1.00 -30.27 407.77 -8.40 -38.66 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -8.33 Total: 8.41 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -0.82 Total: 8.40 kcal Atomic # 7 Polarization: -59.78 SS G_CDS: -0.28 Total: -60.06 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.09 Total: -16.93 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.27 -8.40 -38.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569145357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.685 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds