Wall clock time and date at job start Tue Mar 31 2020 18:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46517 * 2 1 4 4 H 1.08998 * 109.47441 * 55.00139 * 3 2 1 5 5 C 1.53007 * 109.46981 * 174.99955 * 3 2 1 6 6 O 1.42901 * 109.47147 * 294.99817 * 3 2 1 7 7 C 1.35688 * 116.99475 * 150.00316 * 6 3 2 8 8 C 1.38895 * 119.62034 * 179.97438 * 7 6 3 9 9 C 1.39573 * 118.94609 * 179.97438 * 8 7 6 10 10 C 1.48165 * 120.89179 * 179.97438 * 9 8 7 11 11 O 1.21518 * 119.99568 * 359.97438 * 10 9 8 12 12 N 1.34770 * 120.00104 * 180.02562 * 10 9 8 13 13 C 1.46500 * 119.99884 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47451 * 35.00382 * 13 12 10 15 15 C 1.53000 * 109.47521 * 274.99975 * 13 12 10 16 16 C 1.53002 * 109.47356 * 155.00169 * 13 12 10 17 17 N 1.46510 * 109.46743 * 305.00108 * 16 13 12 18 18 C 1.46494 * 119.99803 * 269.99821 * 17 16 13 19 19 C 1.36938 * 119.99996 * 89.99895 * 17 16 13 20 20 H 1.08001 * 119.99884 * 22.34516 * 19 17 16 21 21 C 1.38808 * 120.00037 * 202.34238 * 19 17 16 22 22 N 1.31625 * 119.99962 * 11.25852 * 21 19 17 23 23 Si 1.86800 * 120.00125 * 191.25865 * 21 19 17 24 24 H 1.48494 * 109.47131 * 59.99744 * 23 21 19 25 25 H 1.48500 * 109.47042 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47087 * 299.99914 * 23 21 19 27 27 C 1.39961 * 118.22016 * 0.02562 * 9 8 7 28 28 C 1.37979 * 119.12939 * 359.97438 * 27 9 8 29 29 N 1.31904 * 120.98062 * 359.74109 * 28 27 9 30 30 H 1.09008 * 109.47282 * 299.99593 * 1 2 3 31 31 H 1.08996 * 109.47789 * 60.00331 * 1 2 3 32 32 H 1.09002 * 109.46916 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47176 * 240.00281 * 2 1 3 34 34 H 1.08996 * 109.46892 * 119.99830 * 2 1 3 35 35 H 1.08993 * 109.47115 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46883 * 59.99842 * 5 3 2 37 37 H 1.08999 * 109.46743 * 300.00272 * 5 3 2 38 38 H 1.08002 * 120.52370 * 0.02562 * 8 7 6 39 39 H 0.96999 * 120.00300 * 0.02562 * 12 10 9 40 40 H 1.09005 * 109.46988 * 60.00070 * 15 13 12 41 41 H 1.08996 * 109.47487 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47091 * 300.00628 * 15 13 12 43 43 H 1.09000 * 109.47085 * 64.99158 * 16 13 12 44 44 H 1.08999 * 109.47650 * 185.00133 * 16 13 12 45 45 H 1.09001 * 109.47556 * 94.24682 * 18 17 16 46 46 H 1.09003 * 109.46977 * 214.24895 * 18 17 16 47 47 H 1.09005 * 109.47381 * 334.24674 * 18 17 16 48 48 H 0.97001 * 120.00009 * 180.02562 * 22 21 19 49 49 H 1.07998 * 120.43669 * 179.97438 * 27 9 8 50 50 H 1.08004 * 119.50690 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5648 1.4445 0.1257 6 8 1.6618 2.0814 -1.2211 7 6 1.4504 3.4209 -1.1756 8 6 1.0812 4.0973 -2.3312 9 6 0.8668 5.4750 -2.2682 10 6 0.4724 6.2394 -3.4746 11 8 0.3319 5.6671 -4.5374 12 7 0.2704 7.5694 -3.3935 13 6 -0.1190 8.3252 -4.5865 14 1 -0.7673 7.7103 -5.2108 15 6 1.1329 8.7116 -5.3768 16 6 -0.8677 9.5916 -4.1662 17 7 -1.9994 9.2282 -3.3096 18 6 -3.3080 8.9471 -3.9051 19 6 -1.8338 9.1512 -1.9525 20 1 -1.0241 9.6839 -1.4762 21 6 -2.7068 8.3885 -1.1889 22 7 -3.5508 7.5676 -1.7774 23 14 -2.6840 8.5272 0.6738 24 1 -2.9889 9.9255 1.0698 25 1 -3.7042 7.6152 1.2506 26 1 -1.3404 8.1506 1.1818 27 6 1.0354 6.1154 -1.0352 28 6 1.4039 5.3683 0.0648 29 7 1.5926 4.0664 -0.0309 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9280 2.4721 0.1253 36 1 3.9994 0.9055 -0.7161 37 1 3.8531 0.9572 1.0571 38 1 0.9613 3.5654 -3.2635 39 1 0.3837 8.0264 -2.5454 40 1 1.6663 7.8095 -5.6763 41 1 0.8431 9.2744 -6.2641 42 1 1.7811 9.3266 -4.7526 43 1 -0.1923 10.2475 -3.6168 44 1 -1.2346 10.1082 -5.0531 45 1 -3.4092 7.8745 -4.0704 46 1 -4.0944 9.2866 -3.2309 47 1 -3.3942 9.4711 -4.8570 48 1 -4.1611 7.0349 -1.2439 49 1 0.8792 7.1803 -0.9458 50 1 1.5360 5.8563 1.0192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569145357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:31 Heat of formation + Delta-G solvation = -42.680625 kcal Electronic energy + Delta-G solvation = -30043.734315 eV Core-core repulsion = 26071.262905 eV Total energy + Delta-G solvation = -3972.471410 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.94612 -40.70134 -39.20316 -38.01444 -35.77352 -35.23469 -33.98928 -33.03119 -31.81936 -31.13172 -30.70078 -28.02750 -27.35056 -26.20631 -24.94962 -24.26813 -23.60069 -22.65627 -21.56820 -21.25493 -19.83852 -18.66486 -18.27121 -17.56007 -16.97788 -16.86491 -16.76236 -16.53975 -15.98848 -15.67919 -15.51665 -15.25364 -15.02055 -14.93373 -14.83412 -14.64030 -14.49538 -14.14706 -13.84887 -13.59412 -13.36746 -13.06611 -13.01650 -12.89024 -12.83969 -12.71365 -12.66000 -12.52239 -12.13824 -12.06944 -11.98471 -11.95955 -11.77508 -11.66643 -11.61654 -11.23429 -11.02092 -10.66448 -10.55563 -9.90838 -9.58703 -8.74659 -7.74842 -5.22744 -0.37864 0.07522 1.48871 1.54098 1.58741 1.79525 1.89378 2.35556 2.55867 2.78277 3.22350 3.41461 3.58303 3.74675 3.75786 3.90149 3.94121 3.97488 4.02377 4.16887 4.20252 4.40447 4.43515 4.53434 4.55602 4.60945 4.65909 4.73284 4.78237 4.78547 4.85931 4.92141 4.99241 5.00183 5.00435 5.03372 5.08422 5.19154 5.20359 5.33324 5.35293 5.35671 5.40801 5.66992 5.69397 5.76099 6.20830 6.36632 6.62928 6.69300 7.19167 7.25539 7.92460 8.39209 9.28607 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011810 B = 0.003680 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.209569 B = 7607.373050 C = 8826.003160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.115 4.115 3 C 0.075 3.925 4 H 0.081 0.919 5 C -0.162 4.162 6 O -0.309 6.309 7 C 0.316 3.684 8 C -0.157 4.157 9 C -0.055 4.055 10 C 0.552 3.448 11 O -0.586 6.586 12 N -0.670 5.670 13 C 0.119 3.881 14 H 0.041 0.959 15 C -0.147 4.147 16 C 0.141 3.859 17 N -0.612 5.612 18 C 0.178 3.822 19 C -0.251 4.251 20 H 0.086 0.914 21 C -0.043 4.043 22 N -0.937 5.937 23 Si 0.946 3.054 24 H -0.282 1.282 25 H -0.313 1.313 26 H -0.252 1.252 27 C -0.172 4.172 28 C 0.141 3.859 29 N -0.528 5.528 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.137 0.863 39 H 0.409 0.591 40 H 0.038 0.962 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.076 0.924 45 H -0.010 1.010 46 H 0.019 0.981 47 H 0.027 0.973 48 H 0.240 0.760 49 H 0.156 0.844 50 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.437 -6.026 4.377 16.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C 0.019 3.981 4 H 0.099 0.901 5 C -0.219 4.219 6 O -0.217 6.217 7 C 0.138 3.862 8 C -0.179 4.179 9 C -0.066 4.066 10 C 0.338 3.662 11 O -0.468 6.468 12 N -0.318 5.318 13 C 0.011 3.989 14 H 0.060 0.940 15 C -0.206 4.206 16 C 0.014 3.986 17 N -0.334 5.334 18 C 0.033 3.967 19 C -0.380 4.380 20 H 0.103 0.897 21 C -0.239 4.239 22 N -0.583 5.583 23 Si 0.775 3.225 24 H -0.209 1.209 25 H -0.241 1.241 26 H -0.176 1.176 27 C -0.193 4.193 28 C -0.015 4.015 29 N -0.252 5.252 30 H 0.069 0.931 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.113 0.887 38 H 0.155 0.845 39 H 0.247 0.753 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.008 0.992 46 H 0.038 0.962 47 H 0.045 0.955 48 H 0.049 0.951 49 H 0.174 0.826 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 14.418 -7.128 4.203 16.624 hybrid contribution -1.065 0.341 0.480 1.217 sum 13.354 -6.786 4.684 15.694 Atomic orbital electron populations 1.21772 0.96022 1.02398 1.01117 1.21720 0.96030 0.93089 1.04422 1.22722 0.96362 0.93830 0.85140 0.90053 1.22174 0.93662 1.02352 1.03730 1.86290 1.82509 1.15336 1.37536 1.19562 0.92235 0.85242 0.89205 1.21049 1.04447 0.93409 0.98962 1.20195 0.98107 0.93564 0.94690 1.18327 0.77334 0.83045 0.87491 1.90675 1.54599 1.70323 1.31196 1.45653 1.65938 1.06376 1.13884 1.21853 0.96277 0.94814 0.85918 0.94020 1.22039 0.96751 1.01143 1.00657 1.21418 0.89053 0.93036 0.95052 1.44125 1.05347 1.80716 1.03237 1.20493 0.86898 0.95917 0.93400 1.19454 1.13511 1.22227 0.82855 0.89664 1.25654 1.00030 0.96986 1.01196 1.70274 1.25490 1.27857 1.34714 0.85644 0.78206 0.76750 0.81865 1.20852 1.24104 1.17633 1.22404 1.01759 1.02967 0.92146 1.22929 0.91697 0.87268 0.99556 1.67210 1.20174 1.12137 1.25717 0.93064 0.94589 0.90805 0.90682 0.87321 0.93341 0.91738 0.88731 0.84510 0.75301 0.94305 0.89764 0.90685 0.90857 0.90624 0.99189 0.96231 0.95460 0.95086 0.82594 0.78252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 9.81 71.98 0.71 -2.43 16 2 C -0.12 -2.01 5.64 30.59 0.17 -1.84 16 3 C 0.08 1.67 2.49 30.60 0.08 1.75 16 4 H 0.08 1.95 6.97 -2.39 -0.02 1.94 16 5 C -0.16 -2.93 9.53 71.98 0.69 -2.24 16 6 O -0.31 -9.11 9.30 -90.07 -0.84 -9.95 16 7 C 0.32 10.26 7.45 84.80 0.63 10.89 16 8 C -0.16 -5.67 9.61 22.75 0.22 -5.46 16 9 C -0.05 -2.02 5.91 -19.90 -0.12 -2.14 16 10 C 0.55 22.86 7.76 86.88 0.67 23.54 16 11 O -0.59 -27.96 16.10 -3.77 -0.06 -28.02 16 12 N -0.67 -25.04 4.44 -445.10 -1.98 -27.02 16 13 C 0.12 4.21 2.88 44.99 0.13 4.34 16 14 H 0.04 1.80 7.58 -2.39 -0.02 1.78 16 15 C -0.15 -4.00 9.48 71.98 0.68 -3.32 16 16 C 0.14 4.89 5.36 86.38 0.46 5.36 16 17 N -0.61 -27.68 2.82 -726.91 -2.05 -29.73 16 18 C 0.18 8.66 9.01 127.77 1.15 9.81 16 19 C -0.25 -11.91 8.02 84.03 0.67 -11.24 16 20 H 0.09 3.68 7.84 -2.91 -0.02 3.66 16 21 C -0.04 -2.23 5.13 84.86 0.44 -1.80 16 22 N -0.94 -53.98 10.58 21.65 0.23 -53.75 16 23 Si 0.95 41.22 29.57 68.60 2.03 43.24 16 24 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 26 H -0.25 -9.69 7.11 99.48 0.71 -8.98 16 27 C -0.17 -5.28 9.61 22.63 0.22 -5.07 16 28 C 0.14 3.79 11.17 84.62 0.94 4.74 16 29 N -0.53 -15.59 8.61 -309.13 -2.66 -18.25 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.03 0.90 7.82 -2.39 -0.02 0.88 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 5.15 7.74 -2.91 -0.02 5.13 16 39 H 0.41 14.29 5.54 -92.71 -0.51 13.77 16 40 H 0.04 1.17 8.14 -2.38 -0.02 1.16 16 41 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 44 H 0.08 2.32 7.86 -2.39 -0.02 2.30 16 45 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 46 H 0.02 1.01 7.19 -2.39 -0.02 0.99 16 47 H 0.03 1.12 7.84 -2.38 -0.02 1.10 16 48 H 0.24 13.94 8.31 -92.71 -0.77 13.17 16 49 H 0.16 4.33 6.53 -2.91 -0.02 4.31 16 50 H 0.20 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -68.63 407.77 2.83 -65.81 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.41 Total: 32.78 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: 7.75 Total: 24.89 kcal Atomic # 7 Polarization: -122.29 SS G_CDS: -6.46 Total: -128.75 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.90 Total: -37.97 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -68.63 2.83 -65.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569145357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.126 kcal (2) G-P(sol) polarization free energy of solvation -68.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds