Wall clock time and date at job start Tue Mar 31 2020 18:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 H 1.09006 * 109.46738 * 304.99881 * 3 2 1 5 5 C 1.53001 * 109.47156 * 185.00016 * 3 2 1 6 6 O 1.42897 * 109.47431 * 64.99788 * 3 2 1 7 7 C 1.35676 * 117.00425 * 209.99919 * 6 3 2 8 8 C 1.38894 * 119.62650 * 179.97438 * 7 6 3 9 9 C 1.39572 * 118.94791 * 179.97438 * 8 7 6 10 10 C 1.48164 * 120.89021 * 180.02562 * 9 8 7 11 11 O 1.21514 * 120.00060 * 0.04739 * 10 9 8 12 12 N 1.34777 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99881 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46943 * 324.99355 * 13 12 10 15 15 C 1.52994 * 109.47589 * 84.99897 * 13 12 10 16 16 C 1.53006 * 109.46944 * 205.00170 * 13 12 10 17 17 N 1.46496 * 109.47082 * 54.99335 * 16 13 12 18 18 C 1.46505 * 120.00083 * 269.99809 * 17 16 13 19 19 C 1.36941 * 119.99937 * 90.00842 * 17 16 13 20 20 H 1.07994 * 119.99918 * 20.37022 * 19 17 16 21 21 C 1.38814 * 119.99767 * 200.37939 * 19 17 16 22 22 N 1.31617 * 120.00319 * 15.00321 * 21 19 17 23 23 Si 1.86794 * 119.99597 * 194.99891 * 21 19 17 24 24 H 1.48508 * 109.46928 * 85.00581 * 23 21 19 25 25 H 1.48504 * 109.47250 * 205.00186 * 23 21 19 26 26 H 1.48498 * 109.47774 * 325.00291 * 23 21 19 27 27 C 1.39965 * 118.21853 * 0.04600 * 9 8 7 28 28 C 1.37980 * 119.13442 * 359.97438 * 27 9 8 29 29 N 1.31914 * 120.97365 * 0.02562 * 28 27 9 30 30 H 1.08998 * 109.47030 * 299.99926 * 1 2 3 31 31 H 1.08997 * 109.47106 * 60.00016 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47030 * 240.00074 * 2 1 3 34 34 H 1.08997 * 109.47106 * 119.99984 * 2 1 3 35 35 H 1.09001 * 109.47178 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.46946 * 300.00217 * 5 3 2 37 37 H 1.09004 * 109.47068 * 59.99738 * 5 3 2 38 38 H 1.08008 * 120.52677 * 0.02842 * 8 7 6 39 39 H 0.96999 * 120.00566 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.47085 * 180.02562 * 15 13 12 41 41 H 1.09009 * 109.46972 * 300.00231 * 15 13 12 42 42 H 1.09000 * 109.47421 * 59.99750 * 15 13 12 43 43 H 1.08994 * 109.46895 * 175.00147 * 16 13 12 44 44 H 1.09003 * 109.46423 * 294.99421 * 16 13 12 45 45 H 1.09000 * 109.46467 * 95.13743 * 18 17 16 46 46 H 1.09002 * 109.46762 * 215.13470 * 18 17 16 47 47 H 1.08998 * 109.47352 * 335.13605 * 18 17 16 48 48 H 0.96996 * 119.99862 * 180.02562 * 22 21 19 49 49 H 1.08001 * 120.43154 * 180.25439 * 27 9 8 50 50 H 1.07997 * 119.51172 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4445 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.4505 3.4209 1.1756 8 6 1.0804 4.0972 2.3309 9 6 0.8670 5.4751 2.2682 10 6 0.4716 6.2392 3.4744 11 8 0.3296 5.6668 4.5369 12 7 0.2697 7.5693 3.3933 13 6 -0.1208 8.3250 4.5861 14 1 -0.7697 7.7100 5.2096 15 6 1.1303 8.7113 5.3775 16 6 -0.8691 9.5915 4.1652 17 7 -1.9999 9.2281 3.3075 18 6 -1.8214 9.1460 1.8557 19 6 -3.2238 8.9654 3.8629 20 1 -3.4573 9.3302 4.8522 21 6 -4.1640 8.2301 3.1543 22 7 -3.7977 7.5397 2.0953 23 14 -5.9493 8.2206 3.7038 24 1 -6.6495 9.3989 3.1322 25 1 -6.6066 6.9762 3.2295 26 1 -6.0114 8.2790 5.1863 27 6 1.0363 6.1155 1.0353 28 6 1.4053 5.3686 -0.0646 29 7 1.5984 4.0673 0.0322 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9281 2.4721 -0.1253 36 1 3.9994 0.9054 0.7160 37 1 3.8532 0.9571 -1.0571 38 1 0.9603 3.5653 3.2633 39 1 0.3829 8.0263 2.5453 40 1 0.8397 9.2731 6.2652 41 1 1.6635 7.8090 5.6774 42 1 1.7792 9.3263 4.7540 43 1 -1.2367 10.1079 5.0518 44 1 -0.1931 10.2475 3.6167 45 1 -1.6140 8.1140 1.5731 46 1 -2.7308 9.4833 1.3583 47 1 -0.9869 9.7797 1.5558 48 1 -4.4548 7.0262 1.6000 49 1 0.8845 7.1811 0.9470 50 1 1.5380 5.8566 -1.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569145360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:41 Heat of formation + Delta-G solvation = -22.547388 kcal Electronic energy + Delta-G solvation = -29717.316554 eV Core-core repulsion = 25745.718186 eV Total energy + Delta-G solvation = -3971.598368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.78889 -39.37676 -38.08274 -36.38723 -34.38006 -34.08454 -32.69497 -31.26056 -30.57952 -30.03117 -29.70494 -26.22879 -25.67156 -24.98839 -24.02197 -23.17806 -22.11305 -21.28630 -20.33182 -19.97807 -18.57059 -17.17338 -16.88024 -16.20645 -15.79357 -15.62696 -15.36917 -14.88600 -14.72466 -14.50636 -14.18117 -14.00470 -13.86034 -13.62186 -13.57401 -13.30936 -13.17239 -12.94405 -12.65413 -12.19105 -12.10302 -12.00991 -11.92184 -11.82639 -11.48294 -11.27624 -11.14763 -10.90274 -10.87218 -10.79940 -10.77202 -10.57957 -10.25888 -10.01706 -9.88701 -9.84176 -9.76626 -9.38995 -8.64446 -8.47460 -8.42668 -6.81461 -5.74872 -3.18017 0.87142 1.21369 2.89408 3.23293 3.38934 3.45499 3.46545 3.63200 4.01834 4.26485 4.49934 4.54844 4.76808 4.81398 4.92598 5.05141 5.07681 5.16181 5.20762 5.31884 5.38009 5.40437 5.44418 5.55393 5.65245 5.72130 5.73935 5.75551 5.81208 5.88031 5.92611 5.95977 5.97214 6.05972 6.14871 6.17403 6.19515 6.38337 6.44277 6.49094 6.57515 6.82693 7.07723 7.26720 7.27536 7.60243 7.79234 7.81921 7.99096 8.35205 8.65600 9.20241 9.83408 10.29878 11.30563 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003154 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.624836 B = 8876.030974 C =10065.786343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.168 4.168 6 O -0.298 6.298 7 C 0.318 3.682 8 C -0.136 4.136 9 C -0.039 4.039 10 C 0.560 3.440 11 O -0.538 6.538 12 N -0.686 5.686 13 C 0.116 3.884 14 H 0.088 0.912 15 C -0.159 4.159 16 C 0.142 3.858 17 N -0.597 5.597 18 C 0.160 3.840 19 C -0.257 4.257 20 H 0.069 0.931 21 C 0.005 3.995 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C -0.175 4.175 28 C 0.135 3.865 29 N -0.531 5.531 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.151 0.849 39 H 0.396 0.604 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.044 0.956 47 H -0.005 1.005 48 H 0.251 0.749 49 H 0.141 0.859 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.969 -6.854 -6.244 17.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C 0.028 3.972 4 H 0.108 0.892 5 C -0.226 4.226 6 O -0.205 6.205 7 C 0.140 3.860 8 C -0.158 4.158 9 C -0.049 4.049 10 C 0.345 3.655 11 O -0.416 6.416 12 N -0.335 5.335 13 C 0.008 3.992 14 H 0.106 0.894 15 C -0.219 4.219 16 C 0.014 3.986 17 N -0.320 5.320 18 C 0.015 3.985 19 C -0.387 4.387 20 H 0.087 0.913 21 C -0.194 4.194 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.206 1.206 27 C -0.196 4.196 28 C -0.020 4.020 29 N -0.255 5.255 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.168 0.832 39 H 0.231 0.769 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.014 0.986 48 H 0.062 0.938 49 H 0.158 0.842 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 14.948 -7.992 -6.106 18.016 hybrid contribution -1.263 0.532 0.264 1.396 sum 13.685 -7.459 -5.842 16.645 Atomic orbital electron populations 1.21768 0.95085 1.01772 1.02621 1.21683 0.96916 0.94287 1.02922 1.22405 0.95067 0.93116 0.86578 0.89164 1.22210 0.95201 1.02866 1.02280 1.86295 1.82535 1.15962 1.35757 1.19573 0.92396 0.84647 0.89433 1.21093 1.02748 0.93218 0.98741 1.20261 0.96767 0.93440 0.94481 1.17936 0.77713 0.82494 0.87345 1.90733 1.51828 1.69387 1.29657 1.45689 1.67738 1.06896 1.13227 1.21966 0.94973 0.96142 0.86092 0.89402 1.22156 0.98437 1.01174 1.00088 1.21206 0.89354 0.92619 0.95427 1.43925 1.05905 1.80536 1.01589 1.20872 0.96781 0.97588 0.83249 1.19175 0.89566 1.28163 1.01765 0.91272 1.24935 0.98853 0.97106 0.98495 1.70054 1.32540 1.31586 1.20608 0.86293 0.85274 0.76895 0.78187 1.21530 1.21833 1.20575 1.22155 1.02713 1.01890 0.92798 1.22293 0.93450 0.87694 0.98525 1.67088 1.20306 1.11715 1.26410 0.91939 0.92712 0.92521 0.90176 0.91004 0.91940 0.92063 0.91238 0.83171 0.76885 0.91893 0.92896 0.93097 0.92064 0.93905 0.95041 0.93723 0.98640 0.93845 0.84170 0.81925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.81 37.16 0.36 -1.17 16 2 C -0.12 -1.09 5.64 -26.73 -0.15 -1.24 16 3 C 0.08 0.93 2.49 -26.73 -0.07 0.86 16 4 H 0.09 1.05 6.98 -51.93 -0.36 0.69 16 5 C -0.17 -1.56 9.53 37.16 0.35 -1.21 16 6 O -0.30 -4.14 9.30 -18.73 -0.17 -4.31 16 7 C 0.32 4.80 7.45 -17.16 -0.13 4.67 16 8 C -0.14 -2.24 9.61 -38.84 -0.37 -2.62 16 9 C -0.04 -0.65 5.91 -104.68 -0.62 -1.27 16 10 C 0.56 10.85 7.76 -12.18 -0.09 10.75 16 11 O -0.54 -12.11 16.10 5.35 0.09 -12.02 16 12 N -0.69 -12.26 4.38 -54.64 -0.24 -12.50 16 13 C 0.12 2.11 2.88 -67.93 -0.20 1.91 16 14 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 15 C -0.16 -2.33 9.48 37.15 0.35 -1.98 16 16 C 0.14 2.66 5.33 -4.04 -0.02 2.64 16 17 N -0.60 -13.98 2.78 -181.11 -0.50 -14.49 16 18 C 0.16 3.58 7.60 59.85 0.45 4.03 16 19 C -0.26 -6.87 9.68 -15.06 -0.15 -7.02 16 20 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 21 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 22 N -0.90 -25.76 10.67 55.49 0.59 -25.17 16 23 Si 0.90 21.98 29.58 -169.99 -5.03 16.95 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C -0.17 -2.42 9.61 -39.03 -0.38 -2.79 16 28 C 0.14 1.70 11.17 -17.61 -0.20 1.50 16 29 N -0.53 -7.40 8.61 -13.38 -0.12 -7.52 16 30 H 0.06 0.73 7.82 -51.93 -0.41 0.33 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.15 2.51 7.74 -52.48 -0.41 2.11 16 39 H 0.40 6.36 5.32 -40.82 -0.22 6.14 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.06 1.12 8.03 -51.93 -0.42 0.70 16 44 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 45 H 0.03 0.75 6.97 -51.93 -0.36 0.39 16 46 H 0.04 1.11 7.22 -51.93 -0.37 0.74 16 47 H 0.00 -0.09 7.83 -51.93 -0.41 -0.50 16 48 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.14 1.68 6.53 -52.49 -0.34 1.34 16 50 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 407.29 15.07 6.14 6.14 Total: -1.00 -32.07 407.29 -8.47 -40.54 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.29 Total: 5.25 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -0.93 Total: 7.12 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.27 Total: -59.67 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.09 Total: -16.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.07 -8.47 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569145360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.995 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds