Wall clock time and date at job start Tue Mar 31 2020 18:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46894 * 2 1 4 4 H 1.09006 * 109.46738 * 304.99881 * 3 2 1 5 5 C 1.53001 * 109.47156 * 185.00016 * 3 2 1 6 6 O 1.42897 * 109.47431 * 64.99788 * 3 2 1 7 7 C 1.35676 * 117.00425 * 209.99919 * 6 3 2 8 8 C 1.38894 * 119.62650 * 179.97438 * 7 6 3 9 9 C 1.39572 * 118.94791 * 179.97438 * 8 7 6 10 10 C 1.48164 * 120.89021 * 180.02562 * 9 8 7 11 11 O 1.21514 * 120.00060 * 0.04739 * 10 9 8 12 12 N 1.34777 * 119.99832 * 180.02562 * 10 9 8 13 13 C 1.46505 * 119.99881 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46943 * 324.99355 * 13 12 10 15 15 C 1.52994 * 109.47589 * 84.99897 * 13 12 10 16 16 C 1.53006 * 109.46944 * 205.00170 * 13 12 10 17 17 N 1.46496 * 109.47082 * 54.99335 * 16 13 12 18 18 C 1.46505 * 120.00083 * 269.99809 * 17 16 13 19 19 C 1.36941 * 119.99937 * 90.00842 * 17 16 13 20 20 H 1.07994 * 119.99918 * 20.37022 * 19 17 16 21 21 C 1.38814 * 119.99767 * 200.37939 * 19 17 16 22 22 N 1.31617 * 120.00319 * 15.00321 * 21 19 17 23 23 Si 1.86794 * 119.99597 * 194.99891 * 21 19 17 24 24 H 1.48508 * 109.46928 * 85.00581 * 23 21 19 25 25 H 1.48504 * 109.47250 * 205.00186 * 23 21 19 26 26 H 1.48498 * 109.47774 * 325.00291 * 23 21 19 27 27 C 1.39965 * 118.21853 * 0.04600 * 9 8 7 28 28 C 1.37980 * 119.13442 * 359.97438 * 27 9 8 29 29 N 1.31914 * 120.97365 * 0.02562 * 28 27 9 30 30 H 1.08998 * 109.47030 * 299.99926 * 1 2 3 31 31 H 1.08997 * 109.47106 * 60.00016 * 1 2 3 32 32 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47030 * 240.00074 * 2 1 3 34 34 H 1.08997 * 109.47106 * 119.99984 * 2 1 3 35 35 H 1.09001 * 109.47178 * 180.02562 * 5 3 2 36 36 H 1.08993 * 109.46946 * 300.00217 * 5 3 2 37 37 H 1.09004 * 109.47068 * 59.99738 * 5 3 2 38 38 H 1.08008 * 120.52677 * 0.02842 * 8 7 6 39 39 H 0.96999 * 120.00566 * 0.02562 * 12 10 9 40 40 H 1.08999 * 109.47085 * 180.02562 * 15 13 12 41 41 H 1.09009 * 109.46972 * 300.00231 * 15 13 12 42 42 H 1.09000 * 109.47421 * 59.99750 * 15 13 12 43 43 H 1.08994 * 109.46895 * 175.00147 * 16 13 12 44 44 H 1.09003 * 109.46423 * 294.99421 * 16 13 12 45 45 H 1.09000 * 109.46467 * 95.13743 * 18 17 16 46 46 H 1.09002 * 109.46762 * 215.13470 * 18 17 16 47 47 H 1.08998 * 109.47352 * 335.13605 * 18 17 16 48 48 H 0.96996 * 119.99862 * 180.02562 * 22 21 19 49 49 H 1.08001 * 120.43154 * 180.25439 * 27 9 8 50 50 H 1.07997 * 119.51172 * 180.02562 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5648 1.4445 -0.1257 6 8 1.6619 2.0815 1.2210 7 6 1.4505 3.4209 1.1756 8 6 1.0804 4.0972 2.3309 9 6 0.8670 5.4751 2.2682 10 6 0.4716 6.2392 3.4744 11 8 0.3296 5.6668 4.5369 12 7 0.2697 7.5693 3.3933 13 6 -0.1208 8.3250 4.5861 14 1 -0.7697 7.7100 5.2096 15 6 1.1303 8.7113 5.3775 16 6 -0.8691 9.5915 4.1652 17 7 -1.9999 9.2281 3.3075 18 6 -1.8214 9.1460 1.8557 19 6 -3.2238 8.9654 3.8629 20 1 -3.4573 9.3302 4.8522 21 6 -4.1640 8.2301 3.1543 22 7 -3.7977 7.5397 2.0953 23 14 -5.9493 8.2206 3.7038 24 1 -6.6495 9.3989 3.1322 25 1 -6.6066 6.9762 3.2295 26 1 -6.0114 8.2790 5.1863 27 6 1.0363 6.1155 1.0353 28 6 1.4053 5.3686 -0.0646 29 7 1.5984 4.0673 0.0322 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.9281 2.4721 -0.1253 36 1 3.9994 0.9054 0.7160 37 1 3.8532 0.9571 -1.0571 38 1 0.9603 3.5653 3.2633 39 1 0.3829 8.0263 2.5453 40 1 0.8397 9.2731 6.2652 41 1 1.6635 7.8090 5.6774 42 1 1.7792 9.3263 4.7540 43 1 -1.2367 10.1079 5.0518 44 1 -0.1931 10.2475 3.6167 45 1 -1.6140 8.1140 1.5731 46 1 -2.7308 9.4833 1.3583 47 1 -0.9869 9.7797 1.5558 48 1 -4.4548 7.0262 1.6000 49 1 0.8845 7.1811 0.9470 50 1 1.5380 5.8566 -1.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569145360.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:40 Heat of formation + Delta-G solvation = -43.086870 kcal Electronic energy + Delta-G solvation = -29718.207213 eV Core-core repulsion = 25745.718186 eV Total energy + Delta-G solvation = -3972.489026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.94814 -40.74453 -39.19960 -38.05341 -35.83683 -35.22515 -33.99086 -32.99517 -31.90250 -31.17862 -30.69307 -27.96887 -27.40637 -26.21896 -24.94381 -24.25793 -23.59421 -22.60763 -21.68213 -21.30390 -19.79595 -18.78683 -18.33043 -17.53033 -16.98521 -16.87345 -16.77461 -16.55270 -16.05020 -15.68485 -15.48980 -15.25753 -15.12787 -14.96616 -14.80072 -14.67096 -14.50748 -14.13786 -13.75634 -13.59241 -13.43902 -13.09692 -13.01315 -12.87435 -12.83578 -12.70358 -12.66876 -12.55537 -12.29125 -12.05823 -12.02352 -11.83829 -11.77709 -11.70723 -11.60393 -11.26365 -11.02200 -10.66268 -10.61009 -10.00239 -9.56937 -8.74661 -7.81686 -5.24201 -0.37779 0.09490 1.44198 1.45364 1.52181 1.78254 1.88467 2.30484 2.51793 2.79018 3.24654 3.32023 3.55487 3.73044 3.75718 3.90095 3.95152 3.98573 4.01813 4.17991 4.21262 4.40387 4.41603 4.51496 4.56801 4.62127 4.66903 4.73620 4.78004 4.79881 4.84901 4.91004 4.99336 5.00922 5.01538 5.02417 5.09787 5.19300 5.21427 5.34535 5.37068 5.37920 5.40592 5.62719 5.66323 5.81213 6.22984 6.34128 6.54475 6.71582 7.18829 7.19942 7.92081 8.30451 9.20410 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012189 B = 0.003154 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.624836 B = 8876.030974 C =10065.786343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C 0.076 3.924 4 H 0.084 0.916 5 C -0.162 4.162 6 O -0.311 6.311 7 C 0.317 3.683 8 C -0.160 4.160 9 C -0.057 4.057 10 C 0.552 3.448 11 O -0.583 6.583 12 N -0.678 5.678 13 C 0.120 3.880 14 H 0.038 0.962 15 C -0.147 4.147 16 C 0.142 3.858 17 N -0.612 5.612 18 C 0.171 3.829 19 C -0.258 4.258 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.927 5.927 23 Si 0.956 3.044 24 H -0.283 1.283 25 H -0.302 1.302 26 H -0.275 1.275 27 C -0.171 4.171 28 C 0.146 3.854 29 N -0.528 5.528 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.094 0.906 38 H 0.132 0.868 39 H 0.406 0.594 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.013 0.987 46 H 0.011 0.989 47 H 0.042 0.958 48 H 0.243 0.757 49 H 0.162 0.838 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.655 -5.768 -7.906 19.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C 0.021 3.979 4 H 0.102 0.898 5 C -0.219 4.219 6 O -0.219 6.219 7 C 0.138 3.862 8 C -0.182 4.182 9 C -0.068 4.068 10 C 0.339 3.661 11 O -0.464 6.464 12 N -0.327 5.327 13 C 0.012 3.988 14 H 0.057 0.943 15 C -0.205 4.205 16 C 0.015 3.985 17 N -0.334 5.334 18 C 0.026 3.974 19 C -0.389 4.389 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.574 5.574 23 Si 0.786 3.214 24 H -0.209 1.209 25 H -0.229 1.229 26 H -0.201 1.201 27 C -0.192 4.192 28 C -0.009 4.009 29 N -0.253 5.253 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.150 0.850 39 H 0.244 0.756 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.031 0.969 46 H 0.030 0.970 47 H 0.060 0.940 48 H 0.052 0.948 49 H 0.180 0.820 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.661 -6.873 -7.761 19.623 hybrid contribution -1.737 0.220 0.768 1.912 sum 14.924 -6.653 -6.993 17.773 Atomic orbital electron populations 1.21770 0.96009 1.02361 1.01168 1.21724 0.96041 0.93218 1.04353 1.22715 0.96323 0.93759 0.85146 0.89816 1.22176 0.93688 1.02397 1.03678 1.86289 1.82468 1.15502 1.37622 1.19549 0.92168 0.85202 0.89246 1.21036 1.04647 0.93577 0.98923 1.20165 0.98422 0.93483 0.94693 1.18407 0.77091 0.82937 0.87687 1.90696 1.53942 1.70259 1.31513 1.45648 1.66852 1.06550 1.13667 1.21815 0.96048 0.94884 0.86012 0.94317 1.22032 0.96673 1.01158 1.00667 1.21402 0.88580 0.92960 0.95557 1.44142 1.06395 1.80312 1.02583 1.20687 0.96843 0.97325 0.82559 1.19463 0.91123 1.26820 1.01474 0.91471 1.25564 1.01962 0.97773 0.99205 1.70201 1.32796 1.32722 1.21700 0.85447 0.81730 0.76337 0.77908 1.20930 1.22936 1.20074 1.22412 1.01944 1.03009 0.91785 1.23038 0.91108 0.87086 0.99698 1.67235 1.20085 1.12426 1.25514 0.94657 0.92860 0.90936 0.87298 0.90874 0.93209 0.91920 0.88712 0.84961 0.75623 0.90175 0.94327 0.90186 0.91494 0.90036 0.96879 0.96995 0.93984 0.94809 0.82026 0.77531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.81 71.98 0.71 -2.32 16 2 C -0.12 -1.93 5.64 30.60 0.17 -1.76 16 3 C 0.08 1.60 2.49 30.60 0.08 1.68 16 4 H 0.08 1.86 6.98 -2.38 -0.02 1.85 16 5 C -0.16 -2.75 9.53 71.98 0.69 -2.07 16 6 O -0.31 -8.83 9.30 -89.94 -0.84 -9.67 16 7 C 0.32 9.71 7.45 84.80 0.63 10.34 16 8 C -0.16 -5.55 9.61 22.75 0.22 -5.33 16 9 C -0.06 -1.95 5.91 -19.90 -0.12 -2.07 16 10 C 0.55 22.09 7.76 86.88 0.67 22.77 16 11 O -0.58 -27.85 16.10 -3.76 -0.06 -27.91 16 12 N -0.68 -23.89 4.38 -445.09 -1.95 -25.84 16 13 C 0.12 4.29 2.88 44.99 0.13 4.42 16 14 H 0.04 1.78 7.58 -2.39 -0.02 1.76 16 15 C -0.15 -4.00 9.48 71.98 0.68 -3.32 16 16 C 0.14 4.98 5.33 86.38 0.46 5.45 16 17 N -0.61 -28.01 2.78 -726.92 -2.02 -30.04 16 18 C 0.17 7.40 7.60 127.77 0.97 8.38 16 19 C -0.26 -13.81 9.68 84.03 0.81 -12.99 16 20 H 0.07 3.54 7.86 -2.91 -0.02 3.52 16 21 C -0.05 -2.76 5.06 84.86 0.43 -2.33 16 22 N -0.93 -53.95 10.67 21.65 0.23 -53.72 16 23 Si 0.96 45.87 29.58 68.60 2.03 47.90 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 26 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 27 C -0.17 -4.48 9.61 22.63 0.22 -4.26 16 28 C 0.15 3.31 11.17 84.62 0.94 4.25 16 29 N -0.53 -14.10 8.61 -309.15 -2.66 -16.76 16 30 H 0.03 0.86 7.82 -2.39 -0.02 0.84 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.13 4.91 7.74 -2.91 -0.02 4.89 16 39 H 0.41 12.29 5.32 -92.71 -0.49 11.80 16 40 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 44 H 0.08 2.28 7.86 -2.39 -0.02 2.26 16 45 H 0.01 0.61 6.97 -2.39 -0.02 0.60 16 46 H 0.01 0.56 7.22 -2.39 -0.02 0.55 16 47 H 0.04 1.41 7.83 -2.39 -0.02 1.39 16 48 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 49 H 0.16 3.43 6.53 -2.91 -0.02 3.41 16 50 H 0.21 2.80 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -73.29 407.29 2.86 -70.43 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.43 Total: 24.77 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 7.70 Total: 20.83 kcal Atomic # 7 Polarization: -119.95 SS G_CDS: -6.40 Total: -126.36 kcal Atomic # 8 Polarization: -36.68 SS G_CDS: -0.90 Total: -37.58 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -73.29 2.86 -70.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569145360.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.344 kcal (2) G-P(sol) polarization free energy of solvation -73.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds