Wall clock time and date at job start Tue Mar 31 2020 19:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 N 1.46505 * 109.46749 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99625 * 276.60741 * 4 3 2 6 6 O 1.21492 * 119.99510 * 175.51269 * 5 4 3 7 7 C 1.48328 * 120.00504 * 355.51355 * 5 4 3 8 8 C 1.42269 * 126.94088 * 186.15790 * 7 5 4 9 9 C 1.35314 * 103.92107 * 179.91122 * 8 7 5 10 10 C 1.50707 * 126.66228 * 180.08853 * 9 8 7 11 11 C 1.53002 * 109.46872 * 90.28498 * 10 9 8 12 12 O 1.34009 * 106.66879 * 0.35021 * 9 8 7 13 13 N 1.20901 * 111.84987 * 359.76151 * 12 9 8 14 14 C 1.46493 * 119.99902 * 96.61311 * 4 3 2 15 15 C 1.53047 * 109.45839 * 239.99897 * 14 4 3 16 16 C 1.53198 * 109.31397 * 178.61518 * 15 14 4 17 17 N 1.46925 * 108.89002 * 54.55913 * 16 15 14 18 18 C 1.36942 * 120.62772 * 126.46602 * 17 16 15 19 19 H 1.08001 * 119.99688 * 324.33784 * 18 17 16 20 20 C 1.38809 * 120.00134 * 144.34097 * 18 17 16 21 21 N 1.31618 * 120.00222 * 3.19931 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 183.20656 * 20 18 17 23 23 H 1.48496 * 109.47537 * 89.99326 * 22 20 18 24 24 H 1.48499 * 109.47365 * 210.00003 * 22 20 18 25 25 H 1.48503 * 109.47007 * 329.99775 * 22 20 18 26 26 C 1.46957 * 118.72205 * 306.64335 * 17 16 15 27 27 C 1.53037 * 109.46435 * 119.93056 * 14 4 3 28 28 H 1.09002 * 109.47013 * 59.99292 * 1 2 3 29 29 H 1.08991 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46950 * 299.99954 * 1 2 3 31 31 H 1.09001 * 109.46950 * 240.00046 * 2 1 3 32 32 H 1.08996 * 109.46827 * 120.00332 * 2 1 3 33 33 H 1.08996 * 109.46933 * 60.00594 * 3 2 1 34 34 H 1.08998 * 109.46878 * 300.00216 * 3 2 1 35 35 H 1.08002 * 128.03425 * 0.03404 * 8 7 5 36 36 H 1.08994 * 109.46811 * 210.28490 * 10 9 8 37 37 H 1.09004 * 109.47187 * 330.28746 * 10 9 8 38 38 H 1.09004 * 109.47011 * 60.00140 * 11 10 9 39 39 H 1.09002 * 109.46960 * 179.97438 * 11 10 9 40 40 H 1.08991 * 109.47093 * 300.00065 * 11 10 9 41 41 H 1.09000 * 109.46463 * 359.96624 * 14 4 3 42 42 H 1.09000 * 109.49957 * 58.66247 * 15 14 4 43 43 H 1.09004 * 109.49537 * 298.56140 * 15 14 4 44 44 H 1.08990 * 109.58435 * 174.41929 * 16 15 14 45 45 H 1.09000 * 109.58298 * 294.70148 * 16 15 14 46 46 H 0.96999 * 120.00253 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.46504 * 293.57406 * 26 17 16 48 48 H 1.08996 * 109.71708 * 173.29123 * 26 17 16 49 49 H 1.09008 * 109.49575 * 301.33626 * 27 14 4 50 50 H 1.09000 * 109.49830 * 61.39898 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1794 1.3079 1.1586 6 8 5.3915 1.2259 1.1501 7 6 3.4417 1.2600 2.4445 8 6 4.0026 1.2445 3.7519 9 6 2.9243 1.2006 4.5682 10 6 2.9370 1.1695 6.0749 11 6 2.8983 2.6005 6.6149 12 8 1.8432 1.1844 3.7765 13 7 2.1425 1.2176 2.6056 14 6 4.2370 1.5887 -1.2611 15 6 5.1166 0.3566 -1.4858 16 6 5.8540 0.4972 -2.8213 17 7 6.5864 1.7708 -2.8285 18 6 7.9275 1.8029 -3.1039 19 1 8.5670 1.0000 -2.7681 20 6 8.4648 2.8673 -3.8145 21 7 7.6975 3.8762 -4.1691 22 14 10.2770 2.8679 -4.2679 23 1 10.4567 2.2169 -5.5904 24 1 10.7703 4.2670 -4.3337 25 1 11.0446 2.1203 -3.2398 26 6 5.8530 3.0089 -2.5306 27 6 5.1156 2.8402 -1.1984 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.0464 1.2652 4.0285 36 1 2.0658 0.6218 6.4343 37 1 3.8449 0.6752 6.4205 38 1 1.9903 3.0948 6.2693 39 1 2.9070 2.5780 7.7046 40 1 3.7694 3.1482 6.2554 41 1 3.5283 1.6836 -2.0838 42 1 4.4927 -0.5369 -1.5071 43 1 5.8422 0.2751 -0.6765 44 1 6.5556 -0.3285 -2.9400 45 1 5.1338 0.4851 -3.6394 46 1 8.0729 4.6199 -4.6661 47 1 5.1324 3.2043 -3.3248 48 1 6.5520 3.8421 -2.4583 49 1 4.4908 3.7144 -1.0151 50 1 5.8408 2.7355 -0.3914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661096731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:44 Heat of formation + Delta-G solvation = 48.631164 kcal Electronic energy + Delta-G solvation = -30393.967457 eV Core-core repulsion = 26425.455623 eV Total energy + Delta-G solvation = -3968.511834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -45.19540 -40.07406 -37.02788 -36.06318 -35.19002 -33.97647 -33.23239 -31.93384 -30.46522 -29.96756 -29.41914 -26.26717 -25.70731 -24.49311 -24.02388 -22.64881 -22.12011 -21.68318 -21.59748 -19.55183 -18.56443 -17.87339 -17.52588 -16.96955 -16.42885 -15.73364 -14.98657 -14.96422 -14.74564 -14.59610 -14.54724 -13.89512 -13.67773 -13.64753 -13.52759 -13.15509 -13.00068 -12.92179 -12.65996 -12.49264 -12.33622 -12.14142 -11.87535 -11.64095 -11.42255 -11.37549 -11.25431 -11.09806 -10.85502 -10.76811 -10.71226 -10.49273 -10.28706 -10.02559 -9.97336 -9.73540 -9.60482 -9.55630 -9.35895 -8.45163 -8.26192 -6.46447 -5.71855 -3.23783 1.03989 1.57415 2.72582 3.00331 3.27434 3.42440 3.48202 3.50475 3.86593 4.19076 4.54590 4.60031 4.74804 4.76651 4.86551 4.94975 4.99307 5.08874 5.27663 5.29138 5.37484 5.38709 5.45135 5.49144 5.55181 5.64128 5.67458 5.68156 5.73010 5.78478 5.81407 5.89554 5.96174 6.03884 6.21990 6.27398 6.40349 6.43340 6.61617 6.65727 6.81768 6.89261 7.05300 7.16454 7.45298 7.62099 7.85728 7.87001 7.89037 8.30007 8.60797 9.32152 9.91131 10.51364 11.35198 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003025 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.191963 B = 9254.239157 C =10449.825733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.100 3.900 4 N -0.594 5.594 5 C 0.589 3.411 6 O -0.505 6.505 7 C -0.016 4.016 8 C -0.182 4.182 9 C -0.035 4.035 10 C -0.041 4.041 11 C -0.153 4.153 12 O 0.110 5.890 13 N -0.327 5.327 14 C 0.160 3.840 15 C -0.148 4.148 16 C 0.151 3.849 17 N -0.591 5.591 18 C -0.248 4.248 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.907 5.907 22 Si 0.904 3.096 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.174 3.826 27 C -0.155 4.155 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.178 0.822 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.015 0.985 46 H 0.254 0.746 47 H 0.014 0.986 48 H 0.100 0.900 49 H 0.044 0.956 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.107 -5.151 19.065 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C -0.023 4.023 4 N -0.326 5.326 5 C 0.374 3.626 6 O -0.379 6.379 7 C -0.175 4.175 8 C -0.204 4.204 9 C -0.098 4.098 10 C -0.079 4.079 11 C -0.210 4.210 12 O 0.038 5.962 13 N -0.031 5.031 14 C 0.059 3.941 15 C -0.188 4.188 16 C 0.024 3.976 17 N -0.314 5.314 18 C -0.378 4.378 19 H 0.080 0.920 20 C -0.191 4.191 21 N -0.551 5.551 22 Si 0.733 3.267 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.048 3.952 27 C -0.195 4.195 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.097 0.903 35 H 0.196 0.804 36 H 0.108 0.892 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.063 0.937 43 H 0.102 0.898 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.032 0.968 48 H 0.118 0.882 49 H 0.062 0.938 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.375 -5.042 18.032 24.874 hybrid contribution 1.481 0.041 0.000 1.481 sum -14.894 -5.001 18.033 23.917 Atomic orbital electron populations 1.21645 0.95127 1.01584 1.01876 1.21841 0.96159 0.97003 1.02099 1.21970 0.79211 0.97474 1.03678 1.48236 1.06783 1.70652 1.06889 1.16963 0.86310 0.77932 0.81388 1.90818 1.12434 1.48728 1.85872 1.23737 0.90001 1.06567 0.97147 1.22447 1.01546 1.06563 0.89835 1.24464 0.85518 1.03645 0.96221 1.20134 1.04842 0.99460 0.83493 1.21812 1.03029 0.94846 1.01331 1.84776 1.33604 1.66172 1.11638 1.74352 1.15788 1.16739 0.96188 1.21244 0.93231 0.97364 0.82308 1.22491 0.99272 0.95060 1.01984 1.20856 0.94149 0.90254 0.92322 1.43972 1.05756 1.00778 1.80907 1.19162 0.83614 1.07302 1.27745 0.91975 1.25309 0.98155 0.98028 0.97615 1.69895 1.34528 1.09005 1.41713 0.86266 0.84963 0.76815 0.78612 1.21344 1.21707 1.20420 1.20883 0.94196 0.91285 0.88853 1.22682 0.98880 0.94260 1.03706 0.92738 0.92818 0.92362 0.91890 0.92213 0.88955 0.90331 0.80410 0.89240 0.88343 0.92013 0.91201 0.91892 0.90229 0.93652 0.89808 0.92644 0.96681 0.93616 0.96816 0.88230 0.93769 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.13 -1.57 5.78 -26.73 -0.15 -1.72 16 3 C 0.10 1.31 4.99 -4.04 -0.02 1.29 16 4 N -0.59 -9.69 2.44 -166.99 -0.41 -10.09 16 5 C 0.59 10.28 7.06 -12.11 -0.09 10.20 16 6 O -0.51 -10.51 13.22 5.37 0.07 -10.44 16 7 C -0.02 -0.22 6.70 -82.53 -0.55 -0.78 16 8 C -0.18 -2.12 10.93 -39.08 -0.43 -2.55 16 9 C -0.04 -0.32 6.73 -35.35 -0.24 -0.56 16 10 C -0.04 -0.21 6.50 -27.88 -0.18 -0.39 16 11 C -0.15 -0.74 9.89 37.16 0.37 -0.37 16 12 O 0.11 1.18 11.18 17.26 0.19 1.37 16 13 N -0.33 -4.13 7.55 33.29 0.25 -3.88 16 14 C 0.16 2.96 2.51 -67.89 -0.17 2.79 16 15 C -0.15 -2.93 5.26 -26.60 -0.14 -3.07 16 16 C 0.15 3.38 6.51 -3.71 -0.02 3.36 16 17 N -0.59 -15.61 3.00 -172.29 -0.52 -16.13 16 18 C -0.25 -7.12 9.55 -15.06 -0.14 -7.26 16 19 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 20 C 0.01 0.20 5.30 -17.43 -0.09 0.11 16 21 N -0.91 -26.78 10.69 55.49 0.59 -26.19 16 22 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.17 4.37 5.24 -3.69 -0.02 4.36 16 27 C -0.16 -3.31 5.27 -26.61 -0.14 -3.45 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.78 7.10 -51.93 -0.37 0.41 16 33 H 0.09 1.20 5.38 -51.93 -0.28 0.92 16 34 H 0.08 0.95 7.78 -51.93 -0.40 0.54 16 35 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 36 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 1.40 7.71 -51.93 -0.40 1.00 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.88 6.06 -51.93 -0.31 1.56 16 44 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.10 2.81 6.00 -51.93 -0.31 2.50 16 49 H 0.04 0.87 8.14 -51.92 -0.42 0.45 16 50 H 0.07 1.78 6.37 -51.93 -0.33 1.45 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -32.48 391.47 -8.88 -41.36 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.29 Total: -0.14 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.65 Total: 0.94 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: -0.08 Total: -56.29 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.26 Total: -9.06 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.48 -8.88 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661096731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.990 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds