Wall clock time and date at job start Tue Mar 31 2020 19:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47113 * 2 1 4 4 N 1.46505 * 109.46749 * 180.02562 * 3 2 1 5 5 C 1.34775 * 119.99625 * 276.60741 * 4 3 2 6 6 O 1.21492 * 119.99510 * 175.51269 * 5 4 3 7 7 C 1.48328 * 120.00504 * 355.51355 * 5 4 3 8 8 C 1.42269 * 126.94088 * 186.15790 * 7 5 4 9 9 C 1.35314 * 103.92107 * 179.91122 * 8 7 5 10 10 C 1.50707 * 126.66228 * 180.08853 * 9 8 7 11 11 C 1.53002 * 109.46872 * 90.28498 * 10 9 8 12 12 O 1.34009 * 106.66879 * 0.35021 * 9 8 7 13 13 N 1.20901 * 111.84987 * 359.76151 * 12 9 8 14 14 C 1.46493 * 119.99902 * 96.61311 * 4 3 2 15 15 C 1.53047 * 109.45839 * 239.99897 * 14 4 3 16 16 C 1.53198 * 109.31397 * 178.61518 * 15 14 4 17 17 N 1.46925 * 108.89002 * 54.55913 * 16 15 14 18 18 C 1.36942 * 120.62772 * 126.46602 * 17 16 15 19 19 H 1.08001 * 119.99688 * 324.33784 * 18 17 16 20 20 C 1.38809 * 120.00134 * 144.34097 * 18 17 16 21 21 N 1.31618 * 120.00222 * 3.19931 * 20 18 17 22 22 Si 1.86798 * 120.00188 * 183.20656 * 20 18 17 23 23 H 1.48496 * 109.47537 * 89.99326 * 22 20 18 24 24 H 1.48499 * 109.47365 * 210.00003 * 22 20 18 25 25 H 1.48503 * 109.47007 * 329.99775 * 22 20 18 26 26 C 1.46957 * 118.72205 * 306.64335 * 17 16 15 27 27 C 1.53037 * 109.46435 * 119.93056 * 14 4 3 28 28 H 1.09002 * 109.47013 * 59.99292 * 1 2 3 29 29 H 1.08991 * 109.47245 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46950 * 299.99954 * 1 2 3 31 31 H 1.09001 * 109.46950 * 240.00046 * 2 1 3 32 32 H 1.08996 * 109.46827 * 120.00332 * 2 1 3 33 33 H 1.08996 * 109.46933 * 60.00594 * 3 2 1 34 34 H 1.08998 * 109.46878 * 300.00216 * 3 2 1 35 35 H 1.08002 * 128.03425 * 0.03404 * 8 7 5 36 36 H 1.08994 * 109.46811 * 210.28490 * 10 9 8 37 37 H 1.09004 * 109.47187 * 330.28746 * 10 9 8 38 38 H 1.09004 * 109.47011 * 60.00140 * 11 10 9 39 39 H 1.09002 * 109.46960 * 179.97438 * 11 10 9 40 40 H 1.08991 * 109.47093 * 300.00065 * 11 10 9 41 41 H 1.09000 * 109.46463 * 359.96624 * 14 4 3 42 42 H 1.09000 * 109.49957 * 58.66247 * 15 14 4 43 43 H 1.09004 * 109.49537 * 298.56140 * 15 14 4 44 44 H 1.08990 * 109.58435 * 174.41929 * 16 15 14 45 45 H 1.09000 * 109.58298 * 294.70148 * 16 15 14 46 46 H 0.96999 * 120.00253 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.46504 * 293.57406 * 26 17 16 48 48 H 1.08996 * 109.71708 * 173.29123 * 26 17 16 49 49 H 1.09008 * 109.49575 * 301.33626 * 27 14 4 50 50 H 1.09000 * 109.49830 * 61.39898 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1794 1.3079 1.1586 6 8 5.3915 1.2259 1.1501 7 6 3.4417 1.2600 2.4445 8 6 4.0026 1.2445 3.7519 9 6 2.9243 1.2006 4.5682 10 6 2.9370 1.1695 6.0749 11 6 2.8983 2.6005 6.6149 12 8 1.8432 1.1844 3.7765 13 7 2.1425 1.2176 2.6056 14 6 4.2370 1.5887 -1.2611 15 6 5.1166 0.3566 -1.4858 16 6 5.8540 0.4972 -2.8213 17 7 6.5864 1.7708 -2.8285 18 6 7.9275 1.8029 -3.1039 19 1 8.5670 1.0000 -2.7681 20 6 8.4648 2.8673 -3.8145 21 7 7.6975 3.8762 -4.1691 22 14 10.2770 2.8679 -4.2679 23 1 10.4567 2.2169 -5.5904 24 1 10.7703 4.2670 -4.3337 25 1 11.0446 2.1203 -3.2398 26 6 5.8530 3.0089 -2.5306 27 6 5.1156 2.8402 -1.1984 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6768 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 5.0464 1.2652 4.0285 36 1 2.0658 0.6218 6.4343 37 1 3.8449 0.6752 6.4205 38 1 1.9903 3.0948 6.2693 39 1 2.9070 2.5780 7.7046 40 1 3.7694 3.1482 6.2554 41 1 3.5283 1.6836 -2.0838 42 1 4.4927 -0.5369 -1.5071 43 1 5.8422 0.2751 -0.6765 44 1 6.5556 -0.3285 -2.9400 45 1 5.1338 0.4851 -3.6394 46 1 8.0729 4.6199 -4.6661 47 1 5.1324 3.2043 -3.3248 48 1 6.5520 3.8421 -2.4583 49 1 4.4908 3.7144 -1.0151 50 1 5.8408 2.7355 -0.3914 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661096731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:43 Heat of formation + Delta-G solvation = 31.085929 kcal Electronic energy + Delta-G solvation = -30394.728275 eV Core-core repulsion = 26425.455623 eV Total energy + Delta-G solvation = -3969.272652 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -46.14288 -41.47252 -38.75492 -37.38021 -35.82597 -35.30621 -34.49451 -33.52475 -31.81193 -31.37450 -31.02506 -27.46772 -27.29433 -25.57659 -25.00069 -23.91010 -23.85109 -23.01456 -22.61592 -21.21262 -19.85033 -18.83514 -18.79167 -18.50274 -17.71840 -17.22930 -16.75596 -16.14356 -15.78263 -15.59234 -15.57017 -15.35228 -15.32206 -14.94090 -14.79728 -14.51136 -14.36466 -14.18847 -14.00865 -13.49065 -13.37896 -13.32770 -13.00216 -12.82049 -12.77635 -12.64596 -12.62695 -12.39241 -12.29901 -12.17575 -12.00401 -11.90770 -11.83998 -11.76990 -11.55119 -11.40231 -11.27028 -10.94096 -10.56053 -10.40706 -9.72821 -8.57483 -7.89005 -5.44929 0.04951 0.65666 1.44440 1.45475 1.55009 1.66282 2.01095 2.04471 2.48146 2.77410 3.26317 3.37469 3.66285 3.76950 3.90670 3.94450 3.98169 4.08068 4.14327 4.17293 4.26891 4.35794 4.36635 4.45603 4.47764 4.48563 4.64902 4.68647 4.74581 4.78757 4.82584 4.92203 4.94021 4.97631 5.02160 5.07223 5.10940 5.14216 5.17006 5.20447 5.37336 5.40669 5.41666 5.51604 5.58439 5.62464 5.76639 6.25596 6.43928 6.87041 7.07143 7.15699 7.82479 8.37155 9.15755 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.003025 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.191963 B = 9254.239157 C =10449.825733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.098 3.902 4 N -0.592 5.592 5 C 0.585 3.415 6 O -0.550 6.550 7 C -0.043 4.043 8 C -0.202 4.202 9 C -0.009 4.009 10 C -0.040 4.040 11 C -0.152 4.152 12 O 0.123 5.877 13 N -0.327 5.327 14 C 0.168 3.832 15 C -0.133 4.133 16 C 0.150 3.850 17 N -0.611 5.611 18 C -0.268 4.268 19 H 0.057 0.943 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.971 3.029 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.274 1.274 26 C 0.183 3.817 27 C -0.139 4.139 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.181 0.819 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.056 0.944 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.027 0.973 46 H 0.252 0.748 47 H 0.006 0.994 48 H 0.063 0.937 49 H 0.058 0.942 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.086 -6.015 20.677 28.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 C -0.024 4.024 4 N -0.322 5.322 5 C 0.371 3.629 6 O -0.427 6.427 7 C -0.200 4.200 8 C -0.225 4.225 9 C -0.072 4.072 10 C -0.077 4.077 11 C -0.210 4.210 12 O 0.048 5.952 13 N -0.028 5.028 14 C 0.066 3.934 15 C -0.173 4.173 16 C 0.024 3.976 17 N -0.335 5.335 18 C -0.398 4.398 19 H 0.074 0.926 20 C -0.239 4.239 21 N -0.577 5.577 22 Si 0.798 3.202 23 H -0.206 1.206 24 H -0.216 1.216 25 H -0.199 1.199 26 C 0.057 3.943 27 C -0.179 4.179 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.199 0.801 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.069 0.931 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.045 0.955 46 H 0.061 0.939 47 H 0.024 0.976 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.399 -5.925 19.635 27.553 hybrid contribution 2.025 0.302 -0.382 2.083 sum -16.374 -5.623 19.253 25.892 Atomic orbital electron populations 1.21602 0.93032 1.02424 1.02535 1.21771 0.97847 0.95661 1.01165 1.22199 0.76918 0.98709 1.04574 1.48197 1.08084 1.70160 1.05796 1.17377 0.86031 0.76906 0.82557 1.90793 1.14403 1.50750 1.86704 1.23429 0.90860 1.09195 0.96554 1.22596 1.02562 1.08010 0.89310 1.25087 0.83895 1.00653 0.97565 1.20421 1.06873 1.00203 0.80240 1.21822 1.02256 0.94252 1.02642 1.84753 1.34020 1.65194 1.11245 1.74320 1.14811 1.16507 0.97189 1.20981 0.93203 0.95147 0.84106 1.22272 0.98926 0.96820 0.99298 1.20968 0.94227 0.88430 0.94013 1.44212 1.05577 1.02289 1.81421 1.19411 0.84995 1.07381 1.28031 0.92557 1.26050 1.02496 0.97637 0.97687 1.70071 1.36186 1.09325 1.42146 0.85228 0.79883 0.76694 0.78377 1.20613 1.21581 1.19856 1.20606 0.93254 0.90034 0.90378 1.22398 0.98622 0.96620 1.00308 0.91738 0.91920 0.92036 0.92396 0.93564 0.88595 0.88866 0.80144 0.86877 0.86601 0.92439 0.89101 0.93087 0.88348 0.91053 0.92621 0.92891 0.95488 0.93874 0.97632 0.91893 0.92294 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.13 -2.75 5.78 30.60 0.18 -2.57 16 3 C 0.10 2.40 4.99 86.38 0.43 2.83 16 4 N -0.59 -19.05 2.44 -800.53 -1.95 -21.01 16 5 C 0.58 20.76 7.06 86.93 0.61 21.37 16 6 O -0.55 -23.92 13.22 -3.69 -0.05 -23.97 16 7 C -0.04 -1.23 6.70 42.96 0.29 -0.94 16 8 C -0.20 -4.61 10.93 22.60 0.25 -4.36 16 9 C -0.01 -0.14 6.73 25.01 0.17 0.03 16 10 C -0.04 -0.28 6.50 29.85 0.19 -0.09 16 11 C -0.15 -1.07 9.89 71.98 0.71 -0.36 16 12 O 0.12 2.38 11.18 71.95 0.80 3.18 16 13 N -0.33 -7.83 7.55 -49.52 -0.37 -8.21 16 14 C 0.17 6.19 2.51 45.02 0.11 6.30 16 15 C -0.13 -5.29 5.26 30.68 0.16 -5.13 16 16 C 0.15 6.74 6.51 86.36 0.56 7.31 16 17 N -0.61 -33.20 3.00 -699.02 -2.10 -35.30 16 18 C -0.27 -15.80 9.55 84.03 0.80 -15.00 16 19 H 0.06 3.31 7.83 -2.91 -0.02 3.28 16 20 C -0.04 -2.52 5.30 84.86 0.45 -2.07 16 21 N -0.93 -56.52 10.69 21.65 0.23 -56.29 16 22 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 26 C 0.18 9.55 5.24 86.36 0.45 10.00 16 27 C -0.14 -6.11 5.27 30.67 0.16 -5.95 16 28 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.05 1.14 7.10 -2.39 -0.02 1.12 16 33 H 0.10 2.33 5.38 -2.39 -0.01 2.32 16 34 H 0.09 2.02 7.78 -2.39 -0.02 2.00 16 35 H 0.18 3.90 8.06 -2.91 -0.02 3.87 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 3.30 7.71 -2.39 -0.02 3.28 16 42 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 43 H 0.06 2.57 6.06 -2.38 -0.01 2.55 16 44 H 0.05 2.36 7.93 -2.39 -0.02 2.34 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 48 H 0.06 3.73 6.00 -2.39 -0.01 3.72 16 49 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 50 H 0.05 2.30 6.37 -2.39 -0.02 2.28 16 Total: -1.00 -73.34 391.47 5.76 -67.58 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.92 Total: 15.37 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.25 Total: 9.84 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -4.19 Total: -120.80 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.76 Total: -20.79 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -73.34 5.76 -67.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661096731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.666 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds