Wall clock time and date at job start Tue Mar 31 2020 19:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47444 * 2 1 4 4 N 1.46494 * 109.47514 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99952 * 275.30984 * 4 3 2 6 6 H 1.07998 * 119.99954 * 37.57405 * 5 4 3 7 7 C 1.38810 * 120.00318 * 217.57628 * 5 4 3 8 8 N 1.31626 * 119.99777 * 21.42919 * 7 5 4 9 9 Si 1.86799 * 120.00393 * 201.43421 * 7 5 4 10 10 H 1.48504 * 109.46828 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47214 * 119.99693 * 9 7 5 12 12 H 1.48497 * 109.46885 * 239.99894 * 9 7 5 13 13 C 1.46498 * 120.00280 * 95.31090 * 4 3 2 14 14 C 1.53004 * 109.46670 * 270.00183 * 13 4 3 15 15 N 1.46507 * 109.46854 * 179.97438 * 14 13 4 16 16 C 1.34773 * 119.99963 * 180.02562 * 15 14 13 17 17 O 1.21519 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.48150 * 120.00092 * 180.02562 * 16 15 14 19 19 C 1.39165 * 119.69502 * 180.02562 * 18 16 15 20 20 C 1.38738 * 119.19213 * 179.97438 * 19 18 16 21 21 C 1.38373 * 118.55522 * 0.02562 * 20 19 18 22 22 C 1.39247 * 119.30994 * 359.97438 * 21 20 19 23 23 O 1.35664 * 119.62042 * 180.02562 * 22 21 20 24 24 C 1.42893 * 117.00367 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.47447 * 89.99952 * 24 23 22 26 26 C 1.52999 * 109.47236 * 210.00114 * 24 23 22 27 27 N 1.31924 * 120.76444 * 0.28429 * 22 21 20 28 28 H 1.09005 * 109.47314 * 299.99853 * 1 2 3 29 29 H 1.08998 * 109.47257 * 59.99884 * 1 2 3 30 30 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47314 * 240.00147 * 2 1 3 32 32 H 1.08998 * 109.47257 * 120.00116 * 2 1 3 33 33 H 1.09006 * 109.47265 * 59.99729 * 3 2 1 34 34 H 1.08998 * 109.46988 * 300.00281 * 3 2 1 35 35 H 0.97001 * 119.99693 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47403 * 150.00104 * 13 4 3 37 37 H 1.08998 * 109.47156 * 29.99684 * 13 4 3 38 38 H 1.08997 * 109.47646 * 60.00223 * 14 13 4 39 39 H 1.08996 * 109.47379 * 299.99412 * 14 13 4 40 40 H 0.97001 * 120.00143 * 0.02562 * 15 14 13 41 41 H 1.08007 * 120.40416 * 0.02562 * 19 18 16 42 42 H 1.07993 * 120.72411 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.34432 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.47140 * 330.00526 * 24 23 22 45 45 H 1.08998 * 109.47136 * 300.00429 * 25 24 23 46 46 H 1.08998 * 109.46474 * 59.99752 * 25 24 23 47 47 H 1.08994 * 109.47372 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.47115 * 60.00196 * 26 24 23 49 49 H 1.09003 * 109.47170 * 180.02562 * 26 24 23 50 50 H 1.08999 * 109.47388 * 299.99775 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3325 1.1799 6 1 3.8185 0.6870 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6025 3.1238 0.6479 9 14 6.5991 1.4950 2.6565 10 1 6.0964 0.2707 3.3302 11 1 7.8977 1.2010 1.9990 12 1 6.7858 2.5716 3.6621 13 6 4.2370 1.5601 -1.2641 14 6 4.4917 0.1647 -1.8377 15 7 5.2232 0.2823 -3.1016 16 6 5.5593 -0.8258 -3.7913 17 8 5.2560 -1.9224 -3.3646 18 6 6.2995 -0.7069 -5.0691 19 6 6.6429 -1.8552 -5.7763 20 6 7.3356 -1.7317 -6.9720 21 6 7.6619 -0.4637 -7.4195 22 6 7.2877 0.6436 -6.6625 23 8 7.6039 1.8897 -7.0956 24 6 7.1934 2.9853 -6.2752 25 6 8.2970 3.3082 -5.2658 26 6 6.9315 4.2103 -7.1537 27 7 6.6338 0.4946 -5.5265 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.4215 3.6260 0.7821 36 1 5.1894 2.0596 -1.0871 37 1 3.6476 2.1421 -1.9727 38 1 3.5393 -0.3349 -2.0148 39 1 5.0811 -0.4174 -1.1292 40 1 5.4657 1.1576 -3.4420 41 1 6.3726 -2.8306 -5.3994 42 1 7.6148 -2.6063 -7.5407 43 1 8.2004 -0.3340 -8.3466 44 1 6.2807 2.7183 -5.7425 45 1 8.4836 2.4356 -4.6399 46 1 9.2097 3.5751 -5.7985 47 1 7.9840 4.1442 -4.6403 48 1 6.1453 3.9803 -7.8727 49 1 6.6188 5.0461 -6.5278 50 1 7.8443 4.4773 -7.6863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663689208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:05 Heat of formation + Delta-G solvation = -31.176953 kcal Electronic energy + Delta-G solvation = -29378.806603 eV Core-core repulsion = 25406.834030 eV Total energy + Delta-G solvation = -3971.972574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.97106 -39.30236 -37.99991 -36.47047 -34.32897 -33.42063 -32.95562 -32.66730 -30.82743 -30.38440 -28.19164 -27.38312 -25.57035 -25.03796 -23.79170 -23.05799 -21.33126 -21.07159 -20.55592 -20.10634 -18.63711 -17.61355 -16.61730 -16.19957 -15.96133 -15.85896 -15.35385 -15.16427 -14.79598 -14.53110 -14.35212 -14.14040 -13.98151 -13.70172 -13.39215 -13.19110 -12.96001 -12.79247 -12.63387 -12.46197 -12.39701 -12.23683 -11.99749 -11.57759 -11.51286 -11.19233 -11.06933 -10.95503 -10.90882 -10.74732 -10.44979 -10.37612 -10.30161 -10.14626 -10.07514 -9.87187 -9.72099 -9.48424 -8.73924 -8.55465 -8.43114 -6.63025 -5.84344 -3.43130 0.56834 1.09776 2.82013 2.88215 3.32130 3.38749 3.43066 3.46712 3.83123 4.00730 4.45655 4.67524 4.74185 4.83660 4.84640 4.86391 5.06199 5.12117 5.27034 5.33264 5.44004 5.48332 5.58055 5.66783 5.67332 5.72140 5.75509 5.76843 5.93556 5.95657 6.02820 6.11186 6.11544 6.20603 6.22387 6.28483 6.42327 6.52857 6.62436 6.66204 6.83573 6.97796 6.99641 7.08685 7.18315 7.48017 7.55683 7.80084 7.94168 8.46096 8.49987 9.13684 9.75694 10.33505 11.15604 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003315 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.036492 B = 8443.395502 C = 9379.959894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.138 3.862 14 C 0.094 3.906 15 N -0.696 5.696 16 C 0.560 3.440 17 O -0.538 6.538 18 C 0.129 3.871 19 C -0.154 4.154 20 C -0.048 4.048 21 C -0.175 4.175 22 C 0.324 3.676 23 O -0.302 6.302 24 C 0.080 3.920 25 C -0.170 4.170 26 C -0.150 4.150 27 N -0.516 5.516 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.254 0.746 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.406 0.594 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.091 0.909 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.079 0.921 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.592 -2.378 -17.618 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.011 3.989 14 C -0.031 4.031 15 N -0.345 5.345 16 C 0.343 3.657 17 O -0.415 6.415 18 C -0.008 4.008 19 C -0.175 4.175 20 C -0.073 4.073 21 C -0.196 4.196 22 C 0.143 3.857 23 O -0.210 6.210 24 C 0.024 3.976 25 C -0.227 4.227 26 C -0.207 4.207 27 N -0.243 5.243 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.241 0.759 41 H 0.168 0.832 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.373 -2.144 -16.960 17.259 hybrid contribution 1.072 -0.535 0.140 1.206 sum 3.445 -2.678 -16.820 17.377 Atomic orbital electron populations 1.21720 0.97348 1.00399 1.00986 1.22187 0.93801 1.00947 1.01590 1.20937 0.85042 0.92974 0.98916 1.43606 0.99436 1.84801 1.02049 1.19058 1.05626 1.20397 0.93956 0.92009 1.25171 1.00790 0.94545 0.98069 1.70005 1.25580 1.14801 1.42442 0.86361 0.81553 0.78484 0.81228 1.19937 1.21408 1.21584 1.21049 1.00401 0.91076 0.86419 1.22571 0.94926 1.03070 0.82491 1.46019 1.55950 1.08813 1.23745 1.17886 0.79703 0.85053 0.83029 1.90775 1.55252 1.26474 1.68981 1.21016 0.96437 0.88049 0.95333 1.21993 0.99848 1.00219 0.95465 1.21422 0.94158 0.96992 0.94738 1.21254 1.05251 0.90669 1.02428 1.19725 0.90860 0.86186 0.88917 1.86286 1.74587 1.11552 1.48549 1.22405 0.99209 0.84294 0.91666 1.22229 0.98589 1.02988 0.98943 1.21906 1.02498 0.96040 1.00238 1.67142 1.15735 1.27178 1.14212 0.93213 0.93480 0.93811 0.92931 0.92335 0.93568 0.94768 0.93584 0.88327 0.95271 0.92695 0.91455 0.75885 0.83214 0.83495 0.83825 0.89066 0.91833 0.92181 0.90544 0.91924 0.90186 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.15 -2.66 6.23 -26.74 -0.17 -2.83 16 3 C 0.15 3.06 5.72 -4.05 -0.02 3.03 16 4 N -0.58 -13.93 2.43 -173.25 -0.42 -14.35 16 5 C -0.26 -6.94 9.45 -15.06 -0.14 -7.09 16 6 H 0.06 1.66 7.92 -52.49 -0.42 1.25 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -24.56 11.47 55.49 0.64 -23.92 16 9 Si 0.89 21.36 29.60 -169.99 -5.03 16.33 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.14 3.08 5.45 -4.04 -0.02 3.05 16 14 C 0.09 1.94 6.00 -4.04 -0.02 1.91 16 15 N -0.70 -12.50 5.55 -61.15 -0.34 -12.84 16 16 C 0.56 10.03 7.81 -12.19 -0.10 9.93 16 17 O -0.54 -11.04 16.32 5.35 0.09 -10.95 16 18 C 0.13 1.92 6.75 -83.02 -0.56 1.36 16 19 C -0.15 -1.88 9.63 -39.05 -0.38 -2.26 16 20 C -0.05 -0.44 10.16 -39.35 -0.40 -0.84 16 21 C -0.18 -1.75 10.05 -39.16 -0.39 -2.14 16 22 C 0.32 4.05 7.46 -17.14 -0.13 3.93 16 23 O -0.30 -3.61 9.76 -18.69 -0.18 -3.79 16 24 C 0.08 0.88 3.10 -26.73 -0.08 0.80 16 25 C -0.17 -1.86 9.53 37.16 0.35 -1.51 16 26 C -0.15 -1.28 9.56 37.16 0.36 -0.93 16 27 N -0.52 -7.26 7.82 -9.88 -0.08 -7.34 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.99 6.64 -51.93 -0.34 0.64 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 35 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.10 2.47 5.52 -51.93 -0.29 2.19 16 37 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 38 H 0.05 1.14 6.64 -51.93 -0.34 0.79 16 39 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.41 6.73 7.80 -40.82 -0.32 6.41 16 41 H 0.15 1.76 7.63 -52.48 -0.40 1.36 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.09 1.10 6.98 -51.93 -0.36 0.74 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 412.92 15.07 6.22 6.22 Total: -1.00 -30.24 412.92 -8.87 -39.11 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -8.34 Total: 6.60 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -1.42 Total: 4.93 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.20 Total: -58.45 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.10 Total: -14.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -30.24 -8.87 -39.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663689208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.930 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds