Wall clock time and date at job start Tue Mar 31 2020 19:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47444 * 2 1 4 4 N 1.46494 * 109.47514 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99952 * 275.30984 * 4 3 2 6 6 H 1.07998 * 119.99954 * 37.57405 * 5 4 3 7 7 C 1.38810 * 120.00318 * 217.57628 * 5 4 3 8 8 N 1.31626 * 119.99777 * 21.42919 * 7 5 4 9 9 Si 1.86799 * 120.00393 * 201.43421 * 7 5 4 10 10 H 1.48504 * 109.46828 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47214 * 119.99693 * 9 7 5 12 12 H 1.48497 * 109.46885 * 239.99894 * 9 7 5 13 13 C 1.46498 * 120.00280 * 95.31090 * 4 3 2 14 14 C 1.53004 * 109.46670 * 270.00183 * 13 4 3 15 15 N 1.46507 * 109.46854 * 179.97438 * 14 13 4 16 16 C 1.34773 * 119.99963 * 180.02562 * 15 14 13 17 17 O 1.21519 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.48150 * 120.00092 * 180.02562 * 16 15 14 19 19 C 1.39165 * 119.69502 * 180.02562 * 18 16 15 20 20 C 1.38738 * 119.19213 * 179.97438 * 19 18 16 21 21 C 1.38373 * 118.55522 * 0.02562 * 20 19 18 22 22 C 1.39247 * 119.30994 * 359.97438 * 21 20 19 23 23 O 1.35664 * 119.62042 * 180.02562 * 22 21 20 24 24 C 1.42893 * 117.00367 * 180.02562 * 23 22 21 25 25 C 1.53004 * 109.47447 * 89.99952 * 24 23 22 26 26 C 1.52999 * 109.47236 * 210.00114 * 24 23 22 27 27 N 1.31924 * 120.76444 * 0.28429 * 22 21 20 28 28 H 1.09005 * 109.47314 * 299.99853 * 1 2 3 29 29 H 1.08998 * 109.47257 * 59.99884 * 1 2 3 30 30 H 1.08998 * 109.47562 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47314 * 240.00147 * 2 1 3 32 32 H 1.08998 * 109.47257 * 120.00116 * 2 1 3 33 33 H 1.09006 * 109.47265 * 59.99729 * 3 2 1 34 34 H 1.08998 * 109.46988 * 300.00281 * 3 2 1 35 35 H 0.97001 * 119.99693 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47403 * 150.00104 * 13 4 3 37 37 H 1.08998 * 109.47156 * 29.99684 * 13 4 3 38 38 H 1.08997 * 109.47646 * 60.00223 * 14 13 4 39 39 H 1.08996 * 109.47379 * 299.99412 * 14 13 4 40 40 H 0.97001 * 120.00143 * 0.02562 * 15 14 13 41 41 H 1.08007 * 120.40416 * 0.02562 * 19 18 16 42 42 H 1.07993 * 120.72411 * 179.97438 * 20 19 18 43 43 H 1.07996 * 120.34432 * 180.02562 * 21 20 19 44 44 H 1.09004 * 109.47140 * 330.00526 * 24 23 22 45 45 H 1.08998 * 109.47136 * 300.00429 * 25 24 23 46 46 H 1.08998 * 109.46474 * 59.99752 * 25 24 23 47 47 H 1.08994 * 109.47372 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.47115 * 60.00196 * 26 24 23 49 49 H 1.09003 * 109.47170 * 180.02562 * 26 24 23 50 50 H 1.08999 * 109.47388 * 299.99775 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3325 1.1799 6 1 3.8185 0.6870 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6025 3.1238 0.6479 9 14 6.5991 1.4950 2.6565 10 1 6.0964 0.2707 3.3302 11 1 7.8977 1.2010 1.9990 12 1 6.7858 2.5716 3.6621 13 6 4.2370 1.5601 -1.2641 14 6 4.4917 0.1647 -1.8377 15 7 5.2232 0.2823 -3.1016 16 6 5.5593 -0.8258 -3.7913 17 8 5.2560 -1.9224 -3.3646 18 6 6.2995 -0.7069 -5.0691 19 6 6.6429 -1.8552 -5.7763 20 6 7.3356 -1.7317 -6.9720 21 6 7.6619 -0.4637 -7.4195 22 6 7.2877 0.6436 -6.6625 23 8 7.6039 1.8897 -7.0956 24 6 7.1934 2.9853 -6.2752 25 6 8.2970 3.3082 -5.2658 26 6 6.9315 4.2103 -7.1537 27 7 6.6338 0.4946 -5.5265 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 6.4215 3.6260 0.7821 36 1 5.1894 2.0596 -1.0871 37 1 3.6476 2.1421 -1.9727 38 1 3.5393 -0.3349 -2.0148 39 1 5.0811 -0.4174 -1.1292 40 1 5.4657 1.1576 -3.4420 41 1 6.3726 -2.8306 -5.3994 42 1 7.6148 -2.6063 -7.5407 43 1 8.2004 -0.3340 -8.3466 44 1 6.2807 2.7183 -5.7425 45 1 8.4836 2.4356 -4.6399 46 1 9.2097 3.5751 -5.7985 47 1 7.9840 4.1442 -4.6403 48 1 6.1453 3.9803 -7.8727 49 1 6.6188 5.0461 -6.5278 50 1 7.8443 4.4773 -7.6863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663689208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:04 Heat of formation + Delta-G solvation = -49.846326 kcal Electronic energy + Delta-G solvation = -29379.616168 eV Core-core repulsion = 25406.834030 eV Total energy + Delta-G solvation = -3972.782138 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96723 -40.58750 -39.03965 -38.23367 -35.87605 -34.62570 -34.27717 -33.69895 -32.59265 -31.42720 -29.80747 -28.17128 -27.35389 -26.27057 -24.98313 -24.33435 -22.67180 -22.26391 -21.99338 -21.66738 -19.78439 -18.85326 -18.36573 -17.18822 -17.10420 -16.96387 -16.77709 -16.72744 -16.38328 -15.91597 -15.67765 -15.42056 -15.27002 -14.89596 -14.69605 -14.48938 -14.33114 -14.21647 -13.94163 -13.35758 -13.27408 -13.17790 -13.12646 -13.08735 -12.95006 -12.86828 -12.66740 -12.51459 -12.24451 -12.05454 -11.92148 -11.88735 -11.80840 -11.70772 -11.59327 -11.30085 -11.01790 -10.65894 -10.55281 -10.14218 -9.60226 -8.61266 -7.87434 -5.50482 -0.43312 0.22882 1.40640 1.45680 1.54690 1.64817 1.94499 2.03409 2.48032 2.76596 2.91290 3.20627 3.67548 3.83792 3.89212 3.95096 4.00343 4.02580 4.19530 4.20854 4.27440 4.30526 4.34951 4.45187 4.51943 4.67236 4.69303 4.69383 4.81873 4.83882 4.85318 4.88453 4.97154 4.98269 5.08758 5.13152 5.20467 5.21167 5.25592 5.25822 5.31869 5.39333 5.43172 5.61918 5.63259 5.71039 6.14608 6.35701 6.44363 6.66937 7.05501 7.13725 7.80335 8.33070 9.08505 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003315 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.036492 B = 8443.395502 C = 9379.959894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.053 0.947 7 C -0.027 4.027 8 N -0.910 5.910 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.147 3.853 14 C 0.117 3.883 15 N -0.695 5.695 16 C 0.560 3.440 17 O -0.571 6.571 18 C 0.098 3.902 19 C -0.151 4.151 20 C -0.032 4.032 21 C -0.158 4.158 22 C 0.305 3.695 23 O -0.304 6.304 24 C 0.077 3.923 25 C -0.166 4.166 26 C -0.144 4.144 27 N -0.532 5.532 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.039 0.961 33 H 0.037 0.963 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.073 0.927 37 H 0.041 0.959 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.412 0.588 41 H 0.152 0.848 42 H 0.194 0.806 43 H 0.178 0.822 44 H 0.074 0.926 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.949 -2.975 -19.972 20.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.400 4.400 6 H 0.071 0.929 7 C -0.225 4.225 8 N -0.553 5.553 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.212 1.212 13 C 0.020 3.980 14 C -0.009 4.009 15 N -0.345 5.345 16 C 0.345 3.655 17 O -0.450 6.450 18 C -0.038 4.038 19 C -0.173 4.173 20 C -0.057 4.057 21 C -0.178 4.178 22 C 0.123 3.877 23 O -0.211 6.211 24 C 0.021 3.979 25 C -0.224 4.224 26 C -0.201 4.201 27 N -0.259 5.259 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.249 0.751 41 H 0.169 0.831 42 H 0.211 0.789 43 H 0.195 0.805 44 H 0.093 0.907 45 H 0.058 0.942 46 H 0.090 0.910 47 H 0.098 0.902 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.713 -2.738 -19.324 19.705 hybrid contribution 0.975 -0.352 0.774 1.293 sum 3.688 -3.091 -18.551 19.165 Atomic orbital electron populations 1.21652 0.94216 1.01813 1.01984 1.22013 0.96451 0.98695 1.00301 1.21056 0.83248 0.94615 0.99068 1.43827 1.00882 1.85068 1.01841 1.19193 1.06233 1.19911 0.94665 0.92904 1.25743 1.02074 0.94708 0.99951 1.70094 1.25848 1.15577 1.43781 0.85518 0.79349 0.78129 0.79337 1.19595 1.21815 1.21212 1.20873 0.99171 0.91720 0.86240 1.22061 0.94501 1.01319 0.82986 1.45888 1.56045 1.09555 1.22971 1.18386 0.79051 0.84172 0.83876 1.90738 1.56656 1.27437 1.70193 1.20582 0.98834 0.89493 0.94876 1.22183 0.99574 0.99272 0.96279 1.21897 0.92090 0.98354 0.93340 1.21734 1.03489 0.89879 1.02742 1.20143 0.91368 0.87160 0.89006 1.86288 1.74713 1.11566 1.48550 1.22480 0.98314 0.85021 0.92119 1.22193 0.99295 1.02019 0.98851 1.21890 1.03093 0.95039 1.00070 1.66965 1.16502 1.27066 1.15370 0.92548 0.92159 0.92210 0.93652 0.94179 0.94493 0.93385 0.93744 0.90960 0.94018 0.92761 0.94597 0.75140 0.83053 0.78902 0.80479 0.90744 0.94203 0.91012 0.90193 0.91595 0.89250 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.13 -4.92 6.23 30.59 0.19 -4.73 16 3 C 0.15 6.06 5.72 86.38 0.49 6.55 16 4 N -0.60 -29.37 2.43 -702.03 -1.71 -31.08 16 5 C -0.27 -14.75 9.45 84.03 0.79 -13.95 16 6 H 0.05 2.93 7.92 -2.91 -0.02 2.91 16 7 C -0.03 -1.46 4.95 84.86 0.42 -1.04 16 8 N -0.91 -51.60 11.47 21.65 0.25 -51.36 16 9 Si 0.95 44.81 29.60 68.60 2.03 46.84 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 12 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 13 C 0.15 6.78 5.45 86.38 0.47 7.25 16 14 C 0.12 5.03 6.00 86.38 0.52 5.54 16 15 N -0.69 -26.08 5.55 -465.67 -2.58 -28.66 16 16 C 0.56 20.73 7.81 86.88 0.68 21.41 16 17 O -0.57 -24.23 16.32 -3.77 -0.06 -24.29 16 18 C 0.10 2.93 6.75 41.85 0.28 3.21 16 19 C -0.15 -3.48 9.63 22.61 0.22 -3.26 16 20 C -0.03 -0.48 10.16 22.42 0.23 -0.25 16 21 C -0.16 -2.60 10.05 22.54 0.23 -2.37 16 22 C 0.30 7.19 7.46 84.92 0.63 7.82 16 23 O -0.30 -6.83 9.76 -89.80 -0.88 -7.71 16 24 C 0.08 1.65 3.10 30.60 0.09 1.74 16 25 C -0.17 -3.63 9.53 71.98 0.69 -2.95 16 26 C -0.14 -2.26 9.56 71.98 0.69 -1.58 16 27 N -0.53 -14.98 7.82 -298.20 -2.33 -17.31 16 28 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.04 1.70 6.64 -2.38 -0.02 1.69 16 32 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.04 1.59 8.08 -2.38 -0.02 1.57 16 34 H 0.05 1.85 7.83 -2.39 -0.02 1.83 16 35 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 36 H 0.07 3.78 5.52 -2.39 -0.01 3.76 16 37 H 0.04 1.78 7.86 -2.39 -0.02 1.76 16 38 H 0.05 2.32 6.64 -2.39 -0.02 2.30 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.41 14.38 7.80 -92.71 -0.72 13.65 16 41 H 0.15 3.39 7.63 -2.91 -0.02 3.37 16 42 H 0.19 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 44 H 0.07 1.84 6.98 -2.38 -0.02 1.82 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -67.62 412.92 2.26 -65.36 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.20 Total: 27.97 kcal Atomic # 6 Polarization: 12.90 SS G_CDS: 7.34 Total: 20.23 kcal Atomic # 7 Polarization: -122.03 SS G_CDS: -6.37 Total: -128.41 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.94 Total: -32.00 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -67.62 2.26 -65.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663689208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.518 kcal (2) G-P(sol) polarization free energy of solvation -67.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds