Wall clock time and date at job start Tue Mar 31 2020 19:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 N 1.46494 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00302 * 83.17337 * 4 3 2 6 6 O 1.21492 * 119.99910 * 184.06511 * 5 4 3 7 7 C 1.48330 * 119.99959 * 4.06028 * 5 4 3 8 8 C 1.42268 * 126.93854 * 173.94385 * 7 5 4 9 9 C 1.35310 * 103.92129 * 180.02562 * 8 7 5 10 10 C 1.50707 * 126.66502 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47061 * 119.99576 * 10 9 8 12 12 C 1.52998 * 109.46783 * 239.99759 * 10 9 8 13 13 O 1.34009 * 106.67243 * 359.97438 * 9 8 7 14 14 N 1.20905 * 111.84325 * 0.02562 * 13 9 8 15 15 C 1.46506 * 119.99855 * 263.17460 * 4 3 2 16 16 H 1.08995 * 110.64248 * 182.50979 * 15 4 3 17 17 C 1.55157 * 110.71850 * 59.36201 * 15 4 3 18 18 C 1.55380 * 101.36918 * 277.04601 * 17 15 4 19 19 N 1.47431 * 104.87439 * 323.01754 * 18 17 15 20 20 C 1.36935 * 125.64738 * 204.10105 * 19 18 17 21 21 H 1.08003 * 120.00030 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00079 * 0.03940 * 20 19 18 23 23 N 1.31611 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47187 * 59.99918 * 24 22 20 26 26 H 1.48500 * 109.46929 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47104 * 300.00072 * 24 22 20 28 28 C 1.47021 * 108.70028 * 24.13135 * 19 18 17 29 29 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47119 * 300.00045 * 1 2 3 31 31 H 1.09001 * 109.47180 * 60.00494 * 1 2 3 32 32 H 1.08997 * 109.47119 * 239.99955 * 2 1 3 33 33 H 1.09004 * 109.47192 * 120.00043 * 2 1 3 34 34 H 1.08997 * 109.47242 * 60.00030 * 3 2 1 35 35 H 1.09004 * 109.47204 * 300.00036 * 3 2 1 36 36 H 1.08002 * 128.03612 * 359.97438 * 8 7 5 37 37 H 1.08995 * 109.47081 * 359.97438 * 10 9 8 38 38 H 1.08995 * 109.47161 * 60.00064 * 11 10 9 39 39 H 1.09002 * 109.46769 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46985 * 299.99672 * 11 10 9 41 41 H 1.09008 * 109.47191 * 180.02562 * 12 10 9 42 42 H 1.09008 * 109.47232 * 299.99526 * 12 10 9 43 43 H 1.09000 * 109.47462 * 59.99639 * 12 10 9 44 44 H 1.08999 * 111.00277 * 35.21949 * 17 15 4 45 45 H 1.09010 * 111.00367 * 159.06273 * 17 15 4 46 46 H 1.09007 * 110.34418 * 204.16806 * 18 17 15 47 47 H 1.09000 * 110.44428 * 81.91927 * 18 17 15 48 48 H 0.97006 * 119.99755 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.88379 * 239.52301 * 28 19 18 50 50 H 1.09000 * 109.88201 * 118.36036 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.3041 -1.1598 6 8 5.3911 1.2299 -1.1527 7 6 3.4391 1.2420 -2.4442 8 6 3.9981 1.2187 -3.7522 9 6 2.9190 1.1614 -4.5665 10 6 2.9296 1.1161 -6.0729 11 6 2.2502 -0.1693 -6.5492 12 6 2.1745 2.3269 -6.6248 13 8 1.8389 1.1527 -3.7733 14 7 2.1397 1.1978 -2.6032 15 6 4.2380 1.5932 1.2589 16 1 5.3125 1.6167 1.0777 17 6 3.8724 0.4537 2.2464 18 6 2.5573 0.9984 2.8694 19 7 2.7694 2.4524 2.9897 20 6 2.1283 3.2823 3.8703 21 1 2.3548 4.3383 3.8798 22 6 1.1875 2.7663 4.7510 23 7 0.9121 1.4794 4.7399 24 14 0.3125 3.8985 5.9517 25 1 -0.4338 4.9378 5.1980 26 1 -0.6368 3.1078 6.7756 27 1 1.3121 4.5502 6.8358 28 6 3.7826 2.8639 2.0070 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.0414 1.2422 -4.0306 37 1 3.9593 1.1369 -6.4297 38 1 1.2205 -0.1897 -6.1924 39 1 2.2575 -0.2018 -7.6387 40 1 2.7882 -1.0318 -6.1560 41 1 2.1818 2.2940 -7.7143 42 1 1.1447 2.3065 -6.2679 43 1 2.6585 3.2427 -6.2853 44 1 3.6988 -0.4824 1.7158 45 1 4.6444 0.3327 3.0065 46 1 2.3921 0.5566 3.8521 47 1 1.7113 0.7913 2.2141 48 1 0.2544 1.1189 5.3552 49 1 4.6318 3.3176 2.5180 50 1 3.3489 3.5735 1.3024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664673498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:49 Heat of formation + Delta-G solvation = 61.149102 kcal Electronic energy + Delta-G solvation = -30766.296312 eV Core-core repulsion = 26798.327296 eV Total energy + Delta-G solvation = -3967.969015 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.13704 -40.02673 -37.57246 -36.42144 -35.18617 -33.86374 -32.85973 -31.77389 -30.79998 -29.23362 -27.58762 -27.56115 -25.97881 -25.08853 -24.03281 -23.35549 -22.29108 -21.31535 -20.25287 -19.93780 -18.51299 -17.79795 -17.41309 -16.98131 -16.89137 -15.95321 -15.40097 -14.86560 -14.74267 -14.67958 -14.34382 -13.89577 -13.77495 -13.64364 -13.63449 -13.17567 -12.85131 -12.60733 -12.49410 -12.06004 -11.98690 -11.82541 -11.69600 -11.62973 -11.47639 -11.40686 -11.27791 -11.10499 -10.99210 -10.85405 -10.65880 -10.51799 -10.33339 -10.18553 -10.15769 -9.86443 -9.70717 -9.55012 -9.46649 -8.65352 -8.31218 -6.85701 -5.66979 -3.09094 1.12696 1.60668 2.79346 3.06402 3.26877 3.39460 3.44116 3.44937 3.95604 4.14904 4.47472 4.48685 4.63229 4.77614 4.93438 5.05964 5.21923 5.22787 5.35141 5.40655 5.40836 5.42076 5.46868 5.48903 5.54664 5.55951 5.66702 5.73386 5.76391 5.80642 5.84894 5.89324 5.90967 6.16030 6.21986 6.30387 6.32908 6.44321 6.50283 6.56656 6.62132 6.72187 6.76846 7.00889 7.50954 7.60214 7.62456 7.84043 7.97535 8.26546 8.34070 9.19812 9.80103 10.44612 11.36168 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.003050 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.715168 B = 9176.677018 C = 9651.669889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.091 3.909 4 N -0.571 5.571 5 C 0.591 3.409 6 O -0.538 6.538 7 C -0.019 4.019 8 C -0.182 4.182 9 C -0.033 4.033 10 C -0.011 4.011 11 C -0.151 4.151 12 C -0.151 4.151 13 O 0.117 5.883 14 N -0.315 5.315 15 C 0.125 3.875 16 H 0.101 0.899 17 C -0.156 4.156 18 C 0.140 3.860 19 N -0.602 5.602 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.008 4.008 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.128 3.872 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.084 0.916 36 H 0.177 0.823 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.072 0.928 46 H 0.105 0.895 47 H 0.032 0.968 48 H 0.252 0.748 49 H 0.035 0.965 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.222 -3.399 -22.188 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C -0.032 4.032 4 N -0.302 5.302 5 C 0.377 3.623 6 O -0.414 6.414 7 C -0.177 4.177 8 C -0.205 4.205 9 C -0.096 4.096 10 C -0.030 4.030 11 C -0.208 4.208 12 C -0.209 4.209 13 O 0.043 5.957 14 N -0.017 5.017 15 C 0.022 3.978 16 H 0.119 0.881 17 C -0.196 4.196 18 C 0.016 3.984 19 N -0.328 5.328 20 C -0.352 4.352 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.001 3.999 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.195 0.805 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.123 0.877 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.053 0.947 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.697 -3.434 -21.066 21.412 hybrid contribution 0.284 0.598 0.321 0.736 sum 1.981 -2.836 -20.746 21.032 Atomic orbital electron populations 1.21617 0.95091 1.01274 1.02138 1.21896 0.96524 0.96801 1.01572 1.22251 0.77712 0.98092 1.05100 1.47869 1.07875 1.68629 1.05792 1.17004 0.86143 0.77471 0.81724 1.90745 1.12724 1.51524 1.86432 1.23519 0.90082 1.07418 0.96727 1.22390 1.01317 1.06981 0.89787 1.24430 0.85630 1.03582 0.95923 1.19789 1.02403 0.97391 0.83417 1.21895 1.01371 0.95923 1.01649 1.21902 1.00943 0.96710 1.01315 1.84802 1.33492 1.65772 1.11600 1.74504 1.15648 1.15593 0.95977 1.22244 0.96266 0.97289 0.82033 0.88142 1.23484 1.01912 0.96525 0.97647 1.22331 0.90547 0.83659 1.01864 1.44521 1.44763 1.04488 1.39074 1.19008 1.15724 0.90297 1.10152 0.90604 1.24757 0.99594 0.96237 0.99800 1.69784 1.36511 1.10555 1.40003 0.86171 0.79182 0.79409 0.80826 1.21260 1.21599 1.21210 1.21626 0.93079 0.93654 0.91563 0.93144 0.91807 0.92962 0.93276 0.90922 0.86911 0.89801 0.80537 0.87884 0.91640 0.91301 0.92025 0.91298 0.91636 0.92007 0.91891 0.90965 0.87737 0.95027 0.93686 0.94711 0.95556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.13 -2.15 4.87 -26.73 -0.13 -2.28 16 3 C 0.09 1.63 3.89 -4.05 -0.02 1.61 16 4 N -0.57 -10.44 2.44 -164.95 -0.40 -10.84 16 5 C 0.59 10.61 7.64 -12.11 -0.09 10.51 16 6 O -0.54 -10.63 16.34 5.37 0.09 -10.54 16 7 C -0.02 -0.28 6.67 -82.53 -0.55 -0.84 16 8 C -0.18 -2.18 10.91 -39.08 -0.43 -2.61 16 9 C -0.03 -0.32 5.98 -35.35 -0.21 -0.54 16 10 C -0.01 -0.07 3.34 -91.77 -0.31 -0.37 16 11 C -0.15 -0.83 9.18 37.16 0.34 -0.48 16 12 C -0.15 -0.84 9.17 37.16 0.34 -0.50 16 13 O 0.12 1.43 11.18 17.26 0.19 1.62 16 14 N -0.32 -4.58 7.51 33.29 0.25 -4.33 16 15 C 0.12 2.40 3.56 -66.09 -0.24 2.16 16 16 H 0.10 1.90 7.01 -51.93 -0.36 1.54 16 17 C -0.16 -3.07 6.18 -24.33 -0.15 -3.22 16 18 C 0.14 3.28 4.77 -2.27 -0.01 3.27 16 19 N -0.60 -14.97 2.90 -169.76 -0.49 -15.46 16 20 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 21 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 22 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 23 N -0.92 -26.03 10.09 55.49 0.56 -25.47 16 24 Si 0.91 21.83 29.55 -169.99 -5.02 16.80 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.13 2.73 6.17 -3.06 -0.02 2.71 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.80 7.04 -51.93 -0.37 0.43 16 33 H 0.07 1.30 5.07 -51.93 -0.26 1.04 16 34 H 0.11 2.38 4.91 -51.93 -0.26 2.12 16 35 H 0.08 1.46 5.41 -51.93 -0.28 1.18 16 36 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.10 0.49 8.12 -51.93 -0.42 0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.27 8.14 -51.92 -0.42 -0.16 16 42 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.06 1.16 6.94 -51.93 -0.36 0.80 16 45 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 46 H 0.10 2.80 5.87 -51.93 -0.30 2.50 16 47 H 0.03 0.75 4.18 -51.93 -0.22 0.54 16 48 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.03 0.58 7.95 -51.93 -0.41 0.16 16 LS Contribution 385.62 15.07 5.81 5.81 Total: -1.00 -30.39 385.62 -8.23 -38.63 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -7.86 Total: 2.77 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -1.35 Total: 1.02 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: -0.09 Total: -56.10 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.28 Total: -8.92 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.39 -8.23 -38.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.775 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds