Wall clock time and date at job start Tue Mar 31 2020 19:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46958 * 2 1 4 4 N 1.46494 * 109.47340 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00302 * 83.17337 * 4 3 2 6 6 O 1.21492 * 119.99910 * 184.06511 * 5 4 3 7 7 C 1.48330 * 119.99959 * 4.06028 * 5 4 3 8 8 C 1.42268 * 126.93854 * 173.94385 * 7 5 4 9 9 C 1.35310 * 103.92129 * 180.02562 * 8 7 5 10 10 C 1.50707 * 126.66502 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.47061 * 119.99576 * 10 9 8 12 12 C 1.52998 * 109.46783 * 239.99759 * 10 9 8 13 13 O 1.34009 * 106.67243 * 359.97438 * 9 8 7 14 14 N 1.20905 * 111.84325 * 0.02562 * 13 9 8 15 15 C 1.46506 * 119.99855 * 263.17460 * 4 3 2 16 16 H 1.08995 * 110.64248 * 182.50979 * 15 4 3 17 17 C 1.55157 * 110.71850 * 59.36201 * 15 4 3 18 18 C 1.55380 * 101.36918 * 277.04601 * 17 15 4 19 19 N 1.47431 * 104.87439 * 323.01754 * 18 17 15 20 20 C 1.36935 * 125.64738 * 204.10105 * 19 18 17 21 21 H 1.08003 * 120.00030 * 180.02562 * 20 19 18 22 22 C 1.38815 * 120.00079 * 0.03940 * 20 19 18 23 23 N 1.31611 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99800 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47187 * 59.99918 * 24 22 20 26 26 H 1.48500 * 109.46929 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47104 * 300.00072 * 24 22 20 28 28 C 1.47021 * 108.70028 * 24.13135 * 19 18 17 29 29 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47119 * 300.00045 * 1 2 3 31 31 H 1.09001 * 109.47180 * 60.00494 * 1 2 3 32 32 H 1.08997 * 109.47119 * 239.99955 * 2 1 3 33 33 H 1.09004 * 109.47192 * 120.00043 * 2 1 3 34 34 H 1.08997 * 109.47242 * 60.00030 * 3 2 1 35 35 H 1.09004 * 109.47204 * 300.00036 * 3 2 1 36 36 H 1.08002 * 128.03612 * 359.97438 * 8 7 5 37 37 H 1.08995 * 109.47081 * 359.97438 * 10 9 8 38 38 H 1.08995 * 109.47161 * 60.00064 * 11 10 9 39 39 H 1.09002 * 109.46769 * 179.97438 * 11 10 9 40 40 H 1.08994 * 109.46985 * 299.99672 * 11 10 9 41 41 H 1.09008 * 109.47191 * 180.02562 * 12 10 9 42 42 H 1.09008 * 109.47232 * 299.99526 * 12 10 9 43 43 H 1.09000 * 109.47462 * 59.99639 * 12 10 9 44 44 H 1.08999 * 111.00277 * 35.21949 * 17 15 4 45 45 H 1.09010 * 111.00367 * 159.06273 * 17 15 4 46 46 H 1.09007 * 110.34418 * 204.16806 * 18 17 15 47 47 H 1.09000 * 110.44428 * 81.91927 * 18 17 15 48 48 H 0.97006 * 119.99755 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.88379 * 239.52301 * 28 19 18 50 50 H 1.09000 * 109.88201 * 118.36036 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1784 1.3041 -1.1598 6 8 5.3911 1.2299 -1.1527 7 6 3.4391 1.2420 -2.4442 8 6 3.9981 1.2187 -3.7522 9 6 2.9190 1.1614 -4.5665 10 6 2.9296 1.1161 -6.0729 11 6 2.2502 -0.1693 -6.5492 12 6 2.1745 2.3269 -6.6248 13 8 1.8389 1.1527 -3.7733 14 7 2.1397 1.1978 -2.6032 15 6 4.2380 1.5932 1.2589 16 1 5.3125 1.6167 1.0777 17 6 3.8724 0.4537 2.2464 18 6 2.5573 0.9984 2.8694 19 7 2.7694 2.4524 2.9897 20 6 2.1283 3.2823 3.8703 21 1 2.3548 4.3383 3.8798 22 6 1.1875 2.7663 4.7510 23 7 0.9121 1.4794 4.7399 24 14 0.3125 3.8985 5.9517 25 1 -0.4338 4.9378 5.1980 26 1 -0.6368 3.1078 6.7756 27 1 1.3121 4.5502 6.8358 28 6 3.7826 2.8639 2.0070 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.0414 1.2422 -4.0306 37 1 3.9593 1.1369 -6.4297 38 1 1.2205 -0.1897 -6.1924 39 1 2.2575 -0.2018 -7.6387 40 1 2.7882 -1.0318 -6.1560 41 1 2.1818 2.2940 -7.7143 42 1 1.1447 2.3065 -6.2679 43 1 2.6585 3.2427 -6.2853 44 1 3.6988 -0.4824 1.7158 45 1 4.6444 0.3327 3.0065 46 1 2.3921 0.5566 3.8521 47 1 1.7113 0.7913 2.2141 48 1 0.2544 1.1189 5.3552 49 1 4.6318 3.3176 2.5180 50 1 3.3489 3.5735 1.3024 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664673498.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:48 Heat of formation + Delta-G solvation = 45.764758 kcal Electronic energy + Delta-G solvation = -30766.963427 eV Core-core repulsion = 26798.327296 eV Total energy + Delta-G solvation = -3968.636131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.16796 -41.52687 -39.19094 -37.05779 -36.70022 -35.09214 -34.42486 -33.45132 -31.75188 -31.05976 -29.26062 -27.98808 -27.41878 -26.73643 -25.56920 -24.18790 -23.33289 -22.71219 -22.03275 -21.36065 -19.86402 -19.00190 -18.81532 -18.54894 -17.98248 -17.40550 -16.73493 -16.29186 -16.13855 -15.99514 -15.65720 -15.32146 -15.12354 -14.67539 -14.47217 -14.41578 -14.11399 -14.08509 -13.74903 -13.45835 -13.26124 -13.04980 -12.98584 -12.91210 -12.72408 -12.68195 -12.63556 -12.31458 -12.14257 -12.11467 -12.07384 -11.97558 -11.81446 -11.78247 -11.68417 -11.49122 -11.44063 -11.15683 -10.68633 -10.41676 -9.83115 -8.87820 -7.75741 -5.20048 0.03820 0.65590 1.47283 1.49261 1.55666 1.61251 1.95249 2.04404 2.49450 2.77731 3.30177 3.34128 3.64146 3.75644 3.82437 3.86045 3.95243 4.03046 4.07220 4.11725 4.18317 4.22827 4.34452 4.37230 4.50151 4.56469 4.61100 4.65782 4.76016 4.83362 4.86094 4.88139 4.89694 4.94231 4.99693 5.01141 5.01468 5.12542 5.18222 5.23056 5.32920 5.41295 5.43349 5.47049 5.49508 5.68611 5.82577 6.17848 6.31481 6.75541 7.07113 7.11660 7.76905 8.41110 9.24951 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018867 B = 0.003050 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.715168 B = 9176.677018 C = 9651.669889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.103 3.897 4 N -0.576 5.576 5 C 0.592 3.408 6 O -0.559 6.559 7 C -0.046 4.046 8 C -0.190 4.190 9 C -0.011 4.011 10 C -0.009 4.009 11 C -0.150 4.150 12 C -0.151 4.151 13 O 0.126 5.874 14 N -0.332 5.332 15 C 0.135 3.865 16 H 0.109 0.891 17 C -0.142 4.142 18 C 0.148 3.852 19 N -0.617 5.617 20 C -0.240 4.240 21 H 0.077 0.923 22 C -0.058 4.058 23 N -0.941 5.941 24 Si 0.976 3.024 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.280 1.280 28 C 0.129 3.871 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.193 0.807 37 H 0.126 0.874 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.056 0.944 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.070 0.930 47 H 0.026 0.974 48 H 0.247 0.753 49 H 0.040 0.960 50 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.387 -3.431 -24.821 25.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C -0.019 4.019 4 N -0.306 5.306 5 C 0.379 3.621 6 O -0.437 6.437 7 C -0.203 4.203 8 C -0.212 4.212 9 C -0.074 4.074 10 C -0.028 4.028 11 C -0.208 4.208 12 C -0.208 4.208 13 O 0.049 5.951 14 N -0.033 5.033 15 C 0.032 3.968 16 H 0.127 0.873 17 C -0.181 4.181 18 C 0.024 3.976 19 N -0.344 5.344 20 C -0.368 4.368 21 H 0.094 0.906 22 C -0.251 4.251 23 N -0.591 5.591 24 Si 0.805 3.195 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.206 1.206 28 C 0.003 3.997 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.210 0.790 37 H 0.144 0.856 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.109 0.891 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.044 0.956 48 H 0.057 0.943 49 H 0.058 0.942 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 1.877 -3.459 -23.702 24.026 hybrid contribution 0.226 0.625 1.003 1.203 sum 2.103 -2.834 -22.699 22.972 Atomic orbital electron populations 1.21551 0.94141 1.02203 1.01477 1.21785 0.97252 0.95727 1.01056 1.22074 0.77549 0.98624 1.03674 1.47871 1.07902 1.69040 1.05778 1.17293 0.86041 0.76489 0.82279 1.90720 1.13629 1.52450 1.86899 1.23337 0.90712 1.09690 0.96542 1.22617 1.02618 1.07474 0.88525 1.25114 0.84142 1.00899 0.97283 1.20071 1.04108 0.98167 0.80454 1.21910 1.00679 0.95095 1.03075 1.21918 1.00220 0.95958 1.02727 1.84768 1.34216 1.64965 1.11153 1.74453 1.15434 1.16138 0.97229 1.22046 0.96673 0.95763 0.82333 0.87316 1.23335 0.99958 0.97070 0.97765 1.22091 0.92339 0.83097 1.00062 1.44702 1.45268 1.04991 1.39419 1.19317 1.16067 0.90804 1.10653 0.90560 1.25512 1.00497 0.97623 1.01473 1.70022 1.36746 1.11849 1.40445 0.85193 0.77971 0.77666 0.78691 1.20682 1.21918 1.20603 1.21674 0.92306 0.94687 0.91025 0.91439 0.94237 0.91718 0.92471 0.92453 0.90234 0.89121 0.78983 0.85619 0.92353 0.89086 0.92477 0.89062 0.92379 0.92570 0.90563 0.90371 0.91203 0.95629 0.94306 0.94240 0.96075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.91 71.98 0.71 -3.44 16 2 C -0.12 -3.98 4.87 30.60 0.15 -3.83 16 3 C 0.10 3.74 3.89 86.38 0.34 4.08 16 4 N -0.58 -21.05 2.44 -794.10 -1.94 -22.99 16 5 C 0.59 20.96 7.64 86.93 0.66 21.63 16 6 O -0.56 -21.75 16.34 -3.69 -0.06 -21.81 16 7 C -0.05 -1.35 6.67 42.96 0.29 -1.07 16 8 C -0.19 -4.18 10.91 22.60 0.25 -3.93 16 9 C -0.01 -0.20 5.98 25.01 0.15 -0.05 16 10 C -0.01 -0.08 3.34 -11.54 -0.04 -0.12 16 11 C -0.15 -1.17 9.18 71.98 0.66 -0.51 16 12 C -0.15 -1.21 9.17 71.98 0.66 -0.55 16 13 O 0.13 2.83 11.18 71.94 0.80 3.64 16 14 N -0.33 -9.30 7.51 -49.52 -0.37 -9.67 16 15 C 0.14 5.21 3.56 46.18 0.16 5.38 16 16 H 0.11 4.06 7.01 -2.39 -0.02 4.04 16 17 C -0.14 -5.61 6.18 32.15 0.20 -5.41 16 18 C 0.15 7.15 4.77 87.02 0.42 7.57 16 19 N -0.62 -31.47 2.90 -691.01 -2.00 -33.48 16 20 C -0.24 -13.32 10.27 84.03 0.86 -12.46 16 21 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 22 C -0.06 -3.23 5.49 84.86 0.47 -2.77 16 23 N -0.94 -54.75 10.09 21.65 0.22 -54.53 16 24 Si 0.98 45.45 29.55 68.60 2.03 47.48 16 25 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 28 C 0.13 5.61 6.17 86.73 0.54 6.15 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.06 1.81 7.04 -2.39 -0.02 1.79 16 33 H 0.06 2.07 5.07 -2.39 -0.01 2.06 16 34 H 0.08 3.46 4.91 -2.39 -0.01 3.45 16 35 H 0.09 3.17 5.41 -2.39 -0.01 3.16 16 36 H 0.19 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.13 0.67 8.12 -2.39 -0.02 0.65 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 42 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 43 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.08 2.80 6.94 -2.39 -0.02 2.79 16 45 H 0.08 2.98 8.14 -2.38 -0.02 2.96 16 46 H 0.07 3.89 5.87 -2.38 -0.01 3.88 16 47 H 0.03 1.27 4.18 -2.39 -0.01 1.26 16 48 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 49 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.02 0.94 7.95 -2.39 -0.02 0.93 16 Total: -1.00 -66.57 385.62 6.08 -60.49 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.94 Total: 20.21 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 6.47 Total: 10.66 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -4.10 Total: -120.67 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.74 Total: -18.18 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -66.57 6.08 -60.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664673498.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.256 kcal (2) G-P(sol) polarization free energy of solvation -66.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds