Wall clock time and date at job start Tue Mar 31 2020 19:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47402 * 2 1 4 4 N 1.46898 * 109.47414 * 179.97438 * 3 2 1 5 5 C 1.46899 * 111.00492 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47578 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00042 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.37104 * 119.99993 * 179.97438 * 8 6 5 10 10 H 1.08000 * 119.99738 * 359.97438 * 9 8 6 11 11 C 1.38950 * 119.99983 * 180.02562 * 9 8 6 12 12 N 1.31409 * 119.99798 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99844 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46876 * 90.00430 * 13 11 9 15 15 H 1.48499 * 109.46589 * 210.00165 * 13 11 9 16 16 H 1.48495 * 109.47340 * 330.00136 * 13 11 9 17 17 N 1.46505 * 109.46882 * 119.99808 * 2 1 3 18 18 C 1.34770 * 120.00334 * 294.95801 * 17 2 1 19 19 O 1.21277 * 119.99956 * 5.20622 * 18 17 2 20 20 C 1.50705 * 120.00241 * 185.19788 * 18 17 2 21 21 C 1.54635 * 111.03637 * 292.03194 * 20 18 17 22 22 C 1.51109 * 104.72175 * 217.33023 * 21 20 18 23 23 C 1.30526 * 111.10311 * 16.43581 * 22 21 20 24 24 C 1.51099 * 111.10684 * 0.02562 * 23 22 21 25 25 C 1.52992 * 109.47136 * 239.99897 * 2 1 3 26 26 C 1.53003 * 117.50098 * 294.02438 * 25 2 1 27 27 C 1.53004 * 60.00020 * 252.50803 * 26 25 2 28 28 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46848 * 299.99924 * 1 2 3 30 30 H 1.08999 * 109.46941 * 59.99469 * 1 2 3 31 31 H 1.08999 * 109.47506 * 300.00185 * 3 2 1 32 32 H 1.09006 * 109.47057 * 60.00204 * 3 2 1 33 33 H 1.00900 * 111.00120 * 56.04862 * 4 3 2 34 34 H 1.09005 * 109.47037 * 300.00326 * 5 4 3 35 35 H 1.09003 * 109.47302 * 59.99869 * 5 4 3 36 36 H 0.96993 * 120.00052 * 0.02562 * 8 6 5 37 37 H 0.97000 * 119.99851 * 179.97438 * 12 11 9 38 38 H 0.97002 * 119.99812 * 114.96138 * 17 2 1 39 39 H 1.09008 * 110.90735 * 56.03595 * 20 18 17 40 40 H 1.08994 * 110.38912 * 336.13997 * 21 20 18 41 41 H 1.09000 * 110.38986 * 98.52612 * 21 20 18 42 42 H 1.07993 * 124.45059 * 196.45858 * 22 21 20 43 43 H 1.07998 * 124.44781 * 180.02562 * 23 22 21 44 44 H 1.09000 * 110.38819 * 224.75165 * 24 23 22 45 45 H 1.08998 * 110.39026 * 102.36992 * 24 23 22 46 46 H 1.09000 * 115.56392 * 79.71171 * 25 2 1 47 47 H 1.08996 * 117.50180 * 145.01847 * 26 25 2 48 48 H 1.09005 * 117.49748 * 359.97438 * 26 25 2 49 49 H 1.08998 * 117.49478 * 107.49125 * 27 26 25 50 50 H 1.09002 * 117.49803 * 252.50651 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0356 2.8138 0.0013 6 6 5.5419 2.7736 0.0012 7 8 6.1202 1.7074 0.0012 8 7 6.2468 3.9224 0.0012 9 6 7.6173 3.8858 0.0018 10 1 8.1321 2.9364 0.0026 11 6 8.3440 5.0702 0.0023 12 7 9.6576 5.0350 0.0033 13 14 7.4534 6.7123 0.0016 14 1 7.2165 7.1474 1.4015 15 1 8.2839 7.7253 -0.6978 16 1 6.1521 6.5694 -0.6994 17 7 2.0183 -0.6906 1.1962 18 6 1.7786 -0.1740 2.4177 19 8 1.0793 0.8101 2.5333 20 6 2.3793 -0.8192 3.6400 21 6 1.7566 -2.2114 3.8955 22 6 1.6521 -2.3151 5.3994 23 6 1.7696 -1.1425 5.9607 24 6 1.9713 -0.0612 4.9248 25 6 2.0399 -0.7212 -1.2492 26 6 1.7545 -2.2199 -1.3657 27 6 3.1739 -1.7323 -1.0678 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.8709 0.9162 -0.7805 34 1 3.6864 3.3375 -0.8887 35 1 3.6857 3.3370 0.8912 36 1 5.7844 4.7751 0.0016 37 1 10.1648 5.8618 0.0033 38 1 2.5141 -1.5197 1.1091 39 1 3.4638 -0.8852 3.5517 40 1 0.7679 -2.2743 3.4410 41 1 2.4057 -2.9952 3.5051 42 1 1.5006 -3.2382 5.9391 43 1 1.7280 -0.9681 7.0257 44 1 2.7668 0.6170 5.2337 45 1 1.0439 0.4883 4.7638 46 1 2.0312 -0.1344 -2.1677 47 1 1.5579 -2.6189 -2.3608 48 1 1.2037 -2.6921 -0.5522 49 1 3.5565 -1.8838 -0.0584 50 1 3.9110 -1.8107 -1.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665984550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:05 Heat of formation + Delta-G solvation = -16.588990 kcal Electronic energy + Delta-G solvation = -29944.997776 eV Core-core repulsion = 25973.657784 eV Total energy + Delta-G solvation = -3971.339992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.80083 -39.00968 -38.29710 -37.22687 -35.23209 -33.98393 -33.56543 -31.66750 -31.45365 -29.24660 -28.29379 -27.71792 -25.09730 -23.77156 -22.89033 -22.61601 -22.39922 -20.16138 -19.43122 -19.21447 -18.84157 -18.28657 -17.73855 -16.55096 -16.27707 -15.62689 -15.50963 -15.07639 -14.95343 -14.87678 -14.52618 -14.14650 -13.84556 -13.29110 -13.26899 -13.18087 -12.90962 -12.74531 -12.57451 -12.33939 -12.31439 -12.13387 -11.93109 -11.75817 -11.64237 -11.60957 -11.56801 -11.35202 -11.26509 -11.21217 -11.11706 -10.57127 -10.40811 -10.28352 -9.95497 -9.54550 -9.51407 -9.07367 -8.95176 -8.51342 -8.15648 -8.01871 -6.29007 -3.80039 2.06730 2.71352 3.05041 3.09679 3.15274 3.17122 3.60358 3.78772 4.12077 4.18238 4.30484 4.37291 4.44411 4.65110 4.72131 4.74324 4.89216 4.99808 5.04733 5.12917 5.23470 5.28122 5.38166 5.43356 5.44857 5.47224 5.52324 5.56776 5.59338 5.66902 5.73450 5.74162 5.80613 5.86159 5.88146 5.92682 5.95003 6.00680 6.04703 6.10398 6.16976 6.32712 6.59897 6.68344 7.19372 7.57235 7.61381 7.72417 8.17192 8.31638 8.62920 8.97537 9.45504 9.86490 10.84233 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.003118 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.375835 B = 8978.284889 C =10250.478087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.214 3.786 3 C 0.046 3.954 4 N -0.659 5.659 5 C 0.048 3.952 6 C 0.453 3.547 7 O -0.565 6.565 8 N -0.592 5.592 9 C -0.304 4.304 10 H 0.119 0.881 11 C 0.041 3.959 12 N -0.883 5.883 13 Si 0.879 3.121 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.270 1.270 17 N -0.708 5.708 18 C 0.538 3.462 19 O -0.540 6.540 20 C -0.118 4.118 21 C -0.088 4.088 22 C -0.175 4.175 23 C -0.157 4.157 24 C -0.088 4.088 25 C -0.160 4.160 26 C -0.179 4.179 27 C -0.168 4.168 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.347 0.653 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.398 0.602 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.001 -13.739 3.014 25.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.127 3.873 3 C -0.084 4.084 4 N -0.292 5.292 5 C -0.085 4.085 6 C 0.238 3.762 7 O -0.446 6.446 8 N -0.232 5.232 9 C -0.432 4.432 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.523 5.523 13 Si 0.706 3.294 14 H -0.196 1.196 15 H -0.202 1.202 16 H -0.195 1.195 17 N -0.362 5.362 18 C 0.325 3.675 19 O -0.417 6.417 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.193 4.193 23 C -0.175 4.175 24 C -0.125 4.125 25 C -0.179 4.179 26 C -0.216 4.216 27 C -0.206 4.206 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.167 0.833 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.203 0.797 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.131 0.869 47 H 0.113 0.887 48 H 0.112 0.888 49 H 0.118 0.882 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.818 -13.700 3.750 25.202 hybrid contribution -0.296 1.359 -1.013 1.721 sum -21.113 -12.341 2.737 24.608 Atomic orbital electron populations 1.22128 0.93855 1.02241 1.03292 1.19725 0.93289 0.91374 0.82892 1.22443 0.88668 0.95271 1.02062 1.59977 1.05313 1.12685 1.51224 1.21695 0.94665 0.90979 1.01134 1.19725 0.88033 0.84699 0.83710 1.90544 1.71116 1.29288 1.53695 1.42216 1.07439 1.06270 1.67242 1.19423 0.79125 0.96731 1.47959 0.86333 1.25029 0.95419 0.98016 0.97701 1.69621 1.04793 1.28277 1.49605 0.86675 0.79595 0.84210 0.78942 1.19585 1.20226 1.19538 1.46043 1.57824 1.27282 1.05034 1.20107 0.79653 0.83668 0.84085 1.90587 1.38438 1.26418 1.86301 1.22208 1.01998 0.96141 0.93599 1.21298 1.00972 0.95470 0.94755 1.23169 1.02523 0.98200 0.95449 1.23356 0.99834 0.95059 0.99240 1.21285 1.03193 0.97088 0.90955 1.22519 1.04388 0.92037 0.98918 1.22993 0.99479 0.96057 1.03023 1.23004 0.91554 1.02499 1.03516 0.92453 0.90422 0.91949 0.95120 0.88372 0.83288 0.94080 0.89621 0.79720 0.91662 0.76431 0.87351 0.90569 0.90572 0.85762 0.85701 0.90568 0.88761 0.86876 0.88674 0.88834 0.88210 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 8.37 37.16 0.31 -1.24 16 2 C 0.21 2.29 0.62 -131.82 -0.08 2.20 16 3 C 0.05 0.60 4.39 -3.83 -0.02 0.59 16 4 N -0.66 -10.46 5.94 -115.06 -0.68 -11.14 16 5 C 0.05 0.85 6.17 -4.98 -0.03 0.82 16 6 C 0.45 10.47 7.82 -10.99 -0.09 10.39 16 7 O -0.56 -15.13 15.78 5.55 0.09 -15.04 16 8 N -0.59 -14.41 5.09 -10.96 -0.06 -14.47 16 9 C -0.30 -8.70 10.16 -14.93 -0.15 -8.85 16 10 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 11 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 12 N -0.88 -26.04 13.96 55.50 0.77 -25.27 16 13 Si 0.88 19.75 27.74 -169.99 -4.71 15.04 16 14 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 15 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.27 -5.56 6.52 56.52 0.37 -5.19 16 17 N -0.71 -7.57 4.64 -47.61 -0.22 -7.79 16 18 C 0.54 6.71 6.47 -10.99 -0.07 6.64 16 19 O -0.54 -8.18 11.75 5.56 0.07 -8.11 16 20 C -0.12 -1.27 3.55 -90.04 -0.32 -1.59 16 21 C -0.09 -0.74 6.37 -26.82 -0.17 -0.91 16 22 C -0.18 -1.49 10.78 -35.69 -0.38 -1.87 16 23 C -0.16 -1.45 10.77 -35.70 -0.38 -1.84 16 24 C -0.09 -0.97 6.18 -26.82 -0.17 -1.14 16 25 C -0.16 -1.49 3.99 -90.62 -0.36 -1.86 16 26 C -0.18 -1.36 9.53 -26.73 -0.25 -1.61 16 27 C -0.17 -1.56 9.36 -26.73 -0.25 -1.81 16 28 H 0.06 0.51 7.71 -51.93 -0.40 0.11 16 29 H 0.08 0.92 6.37 -51.93 -0.33 0.59 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.10 1.50 5.99 -51.93 -0.31 1.19 16 33 H 0.35 5.61 7.01 -39.29 -0.28 5.34 16 34 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.37 8.01 5.76 -40.82 -0.24 7.77 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.40 3.68 5.64 -40.82 -0.23 3.45 16 39 H 0.11 1.20 8.14 -51.92 -0.42 0.78 16 40 H 0.08 0.64 7.88 -51.93 -0.41 0.24 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 1.16 6.96 -51.93 -0.36 0.80 16 46 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.09 0.66 7.99 -51.93 -0.42 0.25 16 49 H 0.10 0.96 5.95 -51.93 -0.31 0.65 16 50 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -33.31 396.17 -9.20 -42.51 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: -7.91 Total: 19.35 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.52 Total: -1.04 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -0.19 Total: -58.68 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: 0.15 Total: -23.15 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.71 Total: 15.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.31 -9.20 -42.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665984550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.923 kcal (2) G-P(sol) polarization free energy of solvation -33.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds