Wall clock time and date at job start Tue Mar 31 2020 19:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47402 * 2 1 4 4 N 1.46898 * 109.47414 * 179.97438 * 3 2 1 5 5 C 1.46899 * 111.00492 * 180.02562 * 4 3 2 6 6 C 1.50693 * 109.47578 * 180.02562 * 5 4 3 7 7 O 1.21290 * 120.00042 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00100 * 179.97438 * 6 5 4 9 9 C 1.37104 * 119.99993 * 179.97438 * 8 6 5 10 10 H 1.08000 * 119.99738 * 359.97438 * 9 8 6 11 11 C 1.38950 * 119.99983 * 180.02562 * 9 8 6 12 12 N 1.31409 * 119.99798 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99844 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46876 * 90.00430 * 13 11 9 15 15 H 1.48499 * 109.46589 * 210.00165 * 13 11 9 16 16 H 1.48495 * 109.47340 * 330.00136 * 13 11 9 17 17 N 1.46505 * 109.46882 * 119.99808 * 2 1 3 18 18 C 1.34770 * 120.00334 * 294.95801 * 17 2 1 19 19 O 1.21277 * 119.99956 * 5.20622 * 18 17 2 20 20 C 1.50705 * 120.00241 * 185.19788 * 18 17 2 21 21 C 1.54635 * 111.03637 * 292.03194 * 20 18 17 22 22 C 1.51109 * 104.72175 * 217.33023 * 21 20 18 23 23 C 1.30526 * 111.10311 * 16.43581 * 22 21 20 24 24 C 1.51099 * 111.10684 * 0.02562 * 23 22 21 25 25 C 1.52992 * 109.47136 * 239.99897 * 2 1 3 26 26 C 1.53003 * 117.50098 * 294.02438 * 25 2 1 27 27 C 1.53004 * 60.00020 * 252.50803 * 26 25 2 28 28 H 1.08996 * 109.47228 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46848 * 299.99924 * 1 2 3 30 30 H 1.08999 * 109.46941 * 59.99469 * 1 2 3 31 31 H 1.08999 * 109.47506 * 300.00185 * 3 2 1 32 32 H 1.09006 * 109.47057 * 60.00204 * 3 2 1 33 33 H 1.00900 * 111.00120 * 56.04862 * 4 3 2 34 34 H 1.09005 * 109.47037 * 300.00326 * 5 4 3 35 35 H 1.09003 * 109.47302 * 59.99869 * 5 4 3 36 36 H 0.96993 * 120.00052 * 0.02562 * 8 6 5 37 37 H 0.97000 * 119.99851 * 179.97438 * 12 11 9 38 38 H 0.97002 * 119.99812 * 114.96138 * 17 2 1 39 39 H 1.09008 * 110.90735 * 56.03595 * 20 18 17 40 40 H 1.08994 * 110.38912 * 336.13997 * 21 20 18 41 41 H 1.09000 * 110.38986 * 98.52612 * 21 20 18 42 42 H 1.07993 * 124.45059 * 196.45858 * 22 21 20 43 43 H 1.07998 * 124.44781 * 180.02562 * 23 22 21 44 44 H 1.09000 * 110.38819 * 224.75165 * 24 23 22 45 45 H 1.08998 * 110.39026 * 102.36992 * 24 23 22 46 46 H 1.09000 * 115.56392 * 79.71171 * 25 2 1 47 47 H 1.08996 * 117.50180 * 145.01847 * 26 25 2 48 48 H 1.09005 * 117.49748 * 359.97438 * 26 25 2 49 49 H 1.08998 * 117.49478 * 107.49125 * 27 26 25 50 50 H 1.09002 * 117.49803 * 252.50651 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5090 1.4424 0.0006 5 6 4.0356 2.8138 0.0013 6 6 5.5419 2.7736 0.0012 7 8 6.1202 1.7074 0.0012 8 7 6.2468 3.9224 0.0012 9 6 7.6173 3.8858 0.0018 10 1 8.1321 2.9364 0.0026 11 6 8.3440 5.0702 0.0023 12 7 9.6576 5.0350 0.0033 13 14 7.4534 6.7123 0.0016 14 1 7.2165 7.1474 1.4015 15 1 8.2839 7.7253 -0.6978 16 1 6.1521 6.5694 -0.6994 17 7 2.0183 -0.6906 1.1962 18 6 1.7786 -0.1740 2.4177 19 8 1.0793 0.8101 2.5333 20 6 2.3793 -0.8192 3.6400 21 6 1.7566 -2.2114 3.8955 22 6 1.6521 -2.3151 5.3994 23 6 1.7696 -1.1425 5.9607 24 6 1.9713 -0.0612 4.9248 25 6 2.0399 -0.7212 -1.2492 26 6 1.7545 -2.2199 -1.3657 27 6 3.1739 -1.7323 -1.0678 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 3.8709 0.9162 -0.7805 34 1 3.6864 3.3375 -0.8887 35 1 3.6857 3.3370 0.8912 36 1 5.7844 4.7751 0.0016 37 1 10.1648 5.8618 0.0033 38 1 2.5141 -1.5197 1.1091 39 1 3.4638 -0.8852 3.5517 40 1 0.7679 -2.2743 3.4410 41 1 2.4057 -2.9952 3.5051 42 1 1.5006 -3.2382 5.9391 43 1 1.7280 -0.9681 7.0257 44 1 2.7668 0.6170 5.2337 45 1 1.0439 0.4883 4.7638 46 1 2.0312 -0.1344 -2.1677 47 1 1.5579 -2.6189 -2.3608 48 1 1.2037 -2.6921 -0.5522 49 1 3.5565 -1.8838 -0.0584 50 1 3.9110 -1.8107 -1.8669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665984550.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:04 Heat of formation + Delta-G solvation = -40.416522 kcal Electronic energy + Delta-G solvation = -29946.031016 eV Core-core repulsion = 25973.657784 eV Total energy + Delta-G solvation = -3972.373231 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.71029 -40.31081 -39.68931 -38.08518 -36.52769 -35.82611 -34.64747 -33.75098 -32.43270 -30.05912 -29.14377 -29.05360 -26.69246 -24.93201 -24.10591 -23.46859 -23.08812 -21.30913 -20.98540 -20.38266 -20.07684 -19.56441 -18.60161 -17.97704 -17.23837 -17.06770 -16.68084 -16.31659 -16.20726 -15.98070 -15.65230 -15.36405 -15.16158 -14.98473 -14.51526 -14.36373 -14.15001 -13.93429 -13.69435 -13.51600 -13.34752 -13.17214 -13.03535 -12.89994 -12.80316 -12.59837 -12.52188 -12.43019 -12.30224 -12.15496 -12.05431 -12.02022 -11.99333 -11.53093 -11.15168 -11.02264 -10.50603 -10.44647 -10.25838 -9.86316 -9.78037 -9.29044 -8.42841 -6.03145 1.28399 1.33539 1.37619 1.41899 1.75691 1.93420 2.20901 2.27532 2.71605 2.90453 3.13436 3.43368 3.49529 3.59473 3.68432 3.82467 3.95545 4.01017 4.12426 4.18416 4.29179 4.35376 4.39050 4.45390 4.51255 4.57222 4.59692 4.64978 4.77129 4.79346 4.83500 4.85017 4.87728 4.93548 4.97346 5.07790 5.15028 5.19130 5.23762 5.28788 5.35803 5.51020 5.61615 5.70915 5.88889 6.00594 6.02572 6.46007 6.58493 6.68671 6.86289 7.38055 7.38578 7.93712 8.74695 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.003118 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.375835 B = 8978.284889 C =10250.478087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.214 3.786 3 C 0.049 3.951 4 N -0.669 5.669 5 C 0.061 3.939 6 C 0.452 3.548 7 O -0.607 6.607 8 N -0.592 5.592 9 C -0.327 4.327 10 H 0.058 0.942 11 C -0.013 4.013 12 N -0.933 5.933 13 Si 0.962 3.038 14 H -0.259 1.259 15 H -0.273 1.273 16 H -0.234 1.234 17 N -0.701 5.701 18 C 0.533 3.467 19 O -0.570 6.570 20 C -0.121 4.121 21 C -0.083 4.083 22 C -0.166 4.166 23 C -0.173 4.173 24 C -0.090 4.090 25 C -0.167 4.167 26 C -0.153 4.153 27 C -0.182 4.182 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.079 0.921 33 H 0.346 0.654 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.388 0.612 37 H 0.279 0.721 38 H 0.405 0.595 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.139 0.861 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.117 0.883 47 H 0.109 0.891 48 H 0.103 0.897 49 H 0.093 0.907 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.853 -13.665 2.461 27.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 C -0.081 4.081 4 N -0.302 5.302 5 C -0.072 4.072 6 C 0.240 3.760 7 O -0.491 6.491 8 N -0.234 5.234 9 C -0.456 4.456 10 H 0.076 0.924 11 C -0.212 4.212 12 N -0.574 5.574 13 Si 0.782 3.218 14 H -0.184 1.184 15 H -0.198 1.198 16 H -0.158 1.158 17 N -0.354 5.354 18 C 0.320 3.680 19 O -0.450 6.450 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.184 4.184 23 C -0.191 4.191 24 C -0.128 4.128 25 C -0.185 4.185 26 C -0.190 4.190 27 C -0.219 4.219 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.223 0.777 37 H 0.089 0.911 38 H 0.244 0.756 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.166 0.834 43 H 0.157 0.843 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.135 0.865 47 H 0.127 0.873 48 H 0.121 0.879 49 H 0.111 0.889 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.693 -13.654 3.185 27.530 hybrid contribution 0.656 1.214 -0.849 1.620 sum -23.037 -12.440 2.335 26.285 Atomic orbital electron populations 1.22049 0.92876 1.02975 1.02841 1.19741 0.93897 0.90150 0.83411 1.22444 0.86699 0.97129 1.01809 1.59944 1.07069 1.11758 1.51472 1.21591 0.89861 0.92598 1.03146 1.20826 0.90439 0.83597 0.81126 1.90524 1.72777 1.30927 1.54873 1.42050 1.05831 1.07616 1.67904 1.19011 0.81294 0.95053 1.50259 0.92417 1.26060 0.96186 1.02788 0.96139 1.69793 1.07101 1.30113 1.50343 0.85405 0.79517 0.77006 0.79862 1.18387 1.19777 1.15756 1.46029 1.57303 1.27364 1.04691 1.20409 0.79321 0.83355 0.84910 1.90574 1.39896 1.27733 1.86792 1.22215 1.01579 0.97640 0.92799 1.21317 1.01305 0.94297 0.95120 1.23438 1.00850 0.98741 0.95376 1.23413 1.01371 0.94711 0.99599 1.21246 1.01876 0.97617 0.92024 1.22477 1.04773 0.93032 0.98228 1.23048 0.97551 0.94317 1.04094 1.22985 0.92381 1.03580 1.03003 0.91108 0.92563 0.90653 0.93462 0.90302 0.83471 0.90957 0.88326 0.77687 0.91126 0.75552 0.87995 0.90226 0.88622 0.83399 0.84338 0.91834 0.90522 0.86494 0.87298 0.87851 0.88906 0.88710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 8.37 71.98 0.60 -2.06 16 2 C 0.21 4.27 0.62 3.60 0.00 4.27 16 3 C 0.05 1.22 4.39 86.30 0.38 1.60 16 4 N -0.67 -20.64 5.94 -517.94 -3.08 -23.71 16 5 C 0.06 2.03 6.17 85.55 0.53 2.56 16 6 C 0.45 21.01 7.82 87.65 0.69 21.70 16 7 O -0.61 -33.65 15.78 -3.06 -0.05 -33.70 16 8 N -0.59 -28.77 5.09 -306.98 -1.56 -30.33 16 9 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 10 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 11 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 12 N -0.93 -56.70 13.96 21.66 0.30 -56.39 16 13 Si 0.96 39.79 27.74 68.60 1.90 41.69 16 14 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 H -0.23 -8.27 6.52 99.48 0.65 -7.62 16 17 N -0.70 -14.39 4.64 -422.95 -1.96 -16.35 16 18 C 0.53 13.24 6.47 87.66 0.57 13.81 16 19 O -0.57 -17.52 11.75 -3.02 -0.04 -17.56 16 20 C -0.12 -2.60 3.55 -10.42 -0.04 -2.64 16 21 C -0.08 -1.28 6.37 30.53 0.19 -1.08 16 22 C -0.17 -2.50 10.78 26.26 0.28 -2.22 16 23 C -0.17 -3.08 10.77 26.26 0.28 -2.79 16 24 C -0.09 -2.05 6.18 30.54 0.19 -1.86 16 25 C -0.17 -2.78 3.99 -10.79 -0.04 -2.83 16 26 C -0.15 -1.92 9.53 30.60 0.29 -1.63 16 27 C -0.18 -3.16 9.36 30.60 0.29 -2.88 16 28 H 0.07 1.07 7.71 -2.39 -0.02 1.05 16 29 H 0.06 1.28 6.37 -2.38 -0.02 1.27 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.08 2.35 5.99 -2.38 -0.01 2.33 16 33 H 0.35 10.94 7.01 -89.69 -0.63 10.31 16 34 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.39 15.90 5.76 -92.71 -0.53 15.37 16 37 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.41 7.06 5.64 -92.71 -0.52 6.54 16 39 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.08 1.20 7.88 -2.39 -0.02 1.18 16 41 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 45 H 0.08 1.99 6.96 -2.39 -0.02 1.97 16 46 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.10 1.12 7.99 -2.38 -0.02 1.11 16 49 H 0.09 1.73 5.95 -2.39 -0.01 1.71 16 50 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -77.17 396.17 0.28 -76.90 By element: Atomic # 1 Polarization: 55.12 SS G_CDS: -0.77 Total: 54.35 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 5.53 Total: 5.11 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -6.30 Total: -126.79 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.08 Total: -51.26 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 1.90 Total: 41.69 kcal Total: -77.17 0.28 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665984550.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.481 kcal (2) G-P(sol) polarization free energy of solvation -77.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds