Wall clock time and date at job start Tue Mar 31 2020 18:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47107 * 331.17966 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00246 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 C 1.50700 * 109.51956 * 182.44007 * 7 6 5 9 9 O 1.21292 * 119.99820 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00202 * 179.97438 * 8 7 6 11 11 C 1.46509 * 120.00187 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47057 * 180.02562 * 11 10 8 13 13 O 1.42904 * 110.88754 * 297.57529 * 12 11 10 14 14 C 1.55157 * 111.00168 * 173.65084 * 12 11 10 15 15 C 1.54333 * 102.93905 * 206.42452 * 14 12 11 16 16 N 1.47019 * 107.27193 * 22.19540 * 15 14 12 17 17 C 1.36933 * 125.64757 * 181.09675 * 16 15 14 18 18 H 1.08006 * 120.00003 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00123 * 359.95304 * 17 16 15 20 20 N 1.31618 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46822 * 90.00030 * 21 19 17 23 23 H 1.48497 * 109.47621 * 210.00124 * 21 19 17 24 24 H 1.48498 * 109.47523 * 330.00754 * 21 19 17 25 25 C 1.47425 * 108.70513 * 1.05474 * 16 15 14 26 26 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 27 27 C 1.46847 * 110.99299 * 45.79404 * 4 3 2 28 28 H 4.40890 * 5.52167 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46438 * 211.17950 * 3 2 1 30 30 H 1.08997 * 109.46810 * 91.17923 * 3 2 1 31 31 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 32 32 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 33 33 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 34 34 H 1.08999 * 109.49729 * 299.20033 * 6 5 4 35 35 H 1.09000 * 109.52607 * 62.31478 * 7 6 5 36 36 H 0.97001 * 120.00208 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46862 * 300.00369 * 11 10 8 38 38 H 1.08996 * 109.46649 * 60.00617 * 11 10 8 39 39 H 0.96698 * 113.99755 * 59.30088 * 13 12 11 40 40 H 1.08990 * 110.72044 * 324.78508 * 14 12 11 41 41 H 1.08996 * 110.71646 * 88.06670 * 14 12 11 42 42 H 1.09003 * 109.88085 * 262.77612 * 15 14 12 43 43 H 1.09002 * 109.87893 * 141.61006 * 15 14 12 44 44 H 0.97000 * 120.00268 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.36776 * 217.03463 * 25 16 15 46 46 H 1.09005 * 110.45590 * 94.76134 * 25 16 15 47 47 H 1.08996 * 109.50328 * 177.59853 * 26 7 6 48 48 H 1.09004 * 109.50202 * 297.68149 * 26 7 6 49 49 H 1.09005 * 109.46836 * 65.83946 * 27 4 3 50 50 H 1.08995 * 109.45748 * 305.85482 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2125 0.6676 5 6 4.5846 -1.3670 0.4813 6 6 5.0825 -2.5551 1.3076 7 6 4.3530 -3.8242 0.8586 8 6 4.7954 -4.9870 1.7091 9 8 5.6140 -4.8185 2.5881 10 7 4.2814 -6.2139 1.4931 11 6 4.7119 -7.3444 2.3197 12 6 3.9822 -8.6119 1.8701 13 8 2.5712 -8.4798 2.0538 14 6 4.5264 -9.8602 2.6138 15 6 4.2323 -11.0074 1.6243 16 7 4.0991 -10.4082 0.2883 17 6 3.8153 -11.0875 -0.8663 18 1 3.7377 -10.5534 -1.8018 19 6 3.6277 -12.4625 -0.8344 20 7 3.7221 -13.1133 0.3057 21 14 3.2398 -13.3890 -2.4094 22 1 4.5057 -13.8264 -3.0509 23 1 2.4088 -14.5782 -2.0924 24 1 2.4967 -12.4989 -3.3372 25 6 4.3207 -8.9548 0.3978 26 6 2.8439 -3.6193 1.0171 27 6 2.4109 -2.4004 0.1993 28 1 -1.0499 -0.0002 0.0003 29 1 3.0088 0.8801 0.5321 30 1 3.0093 0.0220 -1.0274 31 1 5.0917 -0.4592 0.8083 32 1 4.7984 -1.5428 -0.5729 33 1 6.1549 -2.6791 1.1570 34 1 4.8819 -2.3735 2.3635 35 1 4.5861 -4.0280 -0.1865 36 1 3.6270 -6.3488 0.7899 37 1 5.7871 -7.4862 2.2098 38 1 4.4771 -7.1408 3.3644 39 1 2.1787 -7.7419 1.5675 40 1 5.5980 -9.7677 2.7895 41 1 3.9924 -10.0135 3.5516 42 1 3.3037 -11.5067 1.9009 43 1 5.0556 -11.7218 1.6297 44 1 3.5907 -14.0741 0.3280 45 1 3.6565 -8.4177 -0.2792 46 1 5.3607 -8.7106 0.1808 47 1 2.3169 -4.5037 0.6590 48 1 2.6074 -3.4555 2.0685 49 1 2.6351 -2.5713 -0.8537 50 1 1.3393 -2.2431 0.3216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672045344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:47 Heat of formation + Delta-G solvation = -0.269672 kcal Electronic energy + Delta-G solvation = -29311.542986 eV Core-core repulsion = 25340.910652 eV Total energy + Delta-G solvation = -3970.632333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.48844 -39.11763 -38.26024 -35.13838 -34.91052 -34.16096 -32.57120 -32.07628 -31.10026 -29.67230 -28.52435 -27.49568 -25.72172 -24.26896 -23.56312 -23.14945 -21.04110 -20.22056 -20.03848 -19.68730 -18.49310 -17.74868 -16.93600 -16.42220 -16.25954 -15.72108 -15.52645 -15.26768 -15.06540 -14.71993 -14.50502 -14.20196 -14.09630 -13.83693 -13.59205 -13.38755 -13.16114 -13.06404 -12.87097 -12.44423 -12.17625 -11.93589 -11.74165 -11.71492 -11.51146 -11.09898 -11.00667 -10.93863 -10.90831 -10.74874 -10.71815 -10.51866 -10.35234 -10.18197 -10.13288 -9.80361 -9.67178 -9.41959 -9.08118 -8.75516 -8.60564 -6.84987 -5.72915 -3.06678 2.29801 2.45994 2.59247 3.10213 3.38406 3.42871 3.45412 3.61143 3.93824 4.31355 4.43069 4.45947 4.47822 4.55436 4.81399 4.83514 4.92171 4.94184 5.02629 5.10030 5.13687 5.18007 5.25509 5.34668 5.37485 5.48320 5.50733 5.52935 5.60673 5.65321 5.72136 5.83435 5.85728 5.96974 6.06700 6.16219 6.33795 6.34662 6.42679 6.53753 6.55796 6.60099 6.63968 7.22002 7.41391 7.51785 7.63022 7.82151 7.97386 8.17154 8.23825 9.19212 9.79390 10.44660 11.38767 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.002333 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.692067 B =11998.997671 C =12941.660385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.186 4.186 3 C 0.162 3.838 4 N -0.535 5.535 5 C 0.056 3.944 6 C -0.095 4.095 7 C -0.110 4.110 8 C 0.519 3.481 9 O -0.540 6.540 10 N -0.726 5.726 11 C 0.104 3.896 12 C 0.102 3.898 13 O -0.536 6.536 14 C -0.128 4.128 15 C 0.182 3.818 16 N -0.598 5.598 17 C -0.230 4.230 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.118 3.882 26 C -0.107 4.107 27 C 0.054 3.946 28 H 0.218 0.782 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.398 0.602 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.363 0.637 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.044 0.956 44 H 0.253 0.747 45 H 0.037 0.963 46 H 0.026 0.974 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.037 0.963 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 25.515 0.372 25.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.187 4.187 3 C 0.036 3.964 4 N -0.261 5.261 5 C -0.072 4.072 6 C -0.133 4.133 7 C -0.131 4.131 8 C 0.305 3.695 9 O -0.417 6.417 10 N -0.378 5.378 11 C -0.020 4.020 12 C 0.060 3.940 13 O -0.340 6.340 14 C -0.167 4.167 15 C 0.057 3.943 16 N -0.324 5.324 17 C -0.359 4.359 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C -0.009 4.009 26 C -0.145 4.145 27 C -0.073 4.073 28 H 0.235 0.765 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.232 0.768 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.208 0.792 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.043 0.957 47 H 0.093 0.907 48 H 0.098 0.902 49 H 0.056 0.944 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.232 24.890 1.836 24.988 hybrid contribution -0.655 -0.263 -2.444 2.544 sum -1.887 24.627 -0.608 24.707 Atomic orbital electron populations 1.24961 0.95965 0.99625 1.00602 1.22791 0.94242 1.00984 1.00657 1.19079 0.84826 0.94428 0.98079 1.62069 1.04328 1.02054 1.57604 1.22162 0.87010 0.99521 0.98489 1.21390 0.99532 0.91133 1.01238 1.21422 0.97253 0.94135 1.00312 1.20537 0.81002 0.83684 0.84251 1.90701 1.33279 1.84489 1.33249 1.46028 1.45675 1.08437 1.37665 1.22036 0.99933 0.84879 0.95190 1.22715 0.80989 0.93005 0.97319 1.86648 1.20361 1.54351 1.72635 1.22909 0.99500 0.94494 0.99790 1.21142 1.00723 0.90645 0.81793 1.44342 1.83219 1.00101 1.04776 1.19011 1.41419 0.89831 0.85607 0.90561 1.24810 1.01932 0.96420 0.97188 1.69959 1.55690 1.07601 1.23416 0.86110 0.77801 0.79508 0.82249 1.21605 1.21627 1.20737 1.22119 0.97731 0.88258 0.92817 1.21592 0.93125 0.97616 1.02197 1.22157 0.99135 0.89396 0.96639 0.76499 0.88271 0.92404 0.89977 0.94398 0.90466 0.90009 0.88689 0.76751 0.90478 0.90813 0.79172 0.90918 0.90927 0.93122 0.93785 0.93683 0.94512 0.95666 0.90707 0.90239 0.94445 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 19.02 29.55 0.56 -0.82 16 2 C -0.19 -1.50 11.51 -37.12 -0.43 -1.92 16 3 C 0.16 1.10 5.77 -6.61 -0.04 1.06 16 4 N -0.54 -4.21 4.79 -238.17 -1.14 -5.35 16 5 C 0.06 0.39 5.43 -3.83 -0.02 0.37 16 6 C -0.09 -0.84 4.68 -26.65 -0.12 -0.97 16 7 C -0.11 -0.99 2.59 -91.65 -0.24 -1.22 16 8 C 0.52 6.39 7.16 -10.99 -0.08 6.32 16 9 O -0.54 -8.70 15.98 5.55 0.09 -8.61 16 10 N -0.73 -8.50 5.07 -60.29 -0.31 -8.80 16 11 C 0.10 1.47 4.90 -4.04 -0.02 1.45 16 12 C 0.10 1.71 0.95 -88.47 -0.08 1.62 16 13 O -0.54 -9.10 13.19 -35.23 -0.46 -9.57 16 14 C -0.13 -2.41 6.16 -24.89 -0.15 -2.56 16 15 C 0.18 4.44 5.37 -3.06 -0.02 4.42 16 16 N -0.60 -15.10 3.39 -170.06 -0.58 -15.68 16 17 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 20 N -0.92 -27.11 10.31 55.49 0.57 -26.53 16 21 Si 0.91 22.03 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.12 2.30 5.93 -2.53 -0.01 2.28 16 26 C -0.11 -0.86 5.26 -26.65 -0.14 -1.00 16 27 C 0.05 0.42 5.08 -3.83 -0.02 0.40 16 28 H 0.22 0.88 7.80 -54.10 -0.42 0.45 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.08 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.87 8.04 -51.93 -0.42 0.45 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 3.88 6.78 -40.82 -0.28 3.61 16 37 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.36 4.60 8.16 45.56 0.37 4.98 16 40 H 0.07 1.23 8.01 -51.93 -0.42 0.81 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 43 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.90 16 45 H 0.04 0.67 7.97 -51.93 -0.41 0.25 16 46 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 47 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.08 0.69 6.36 -51.93 -0.33 0.36 16 LS Contribution 398.45 15.07 6.00 6.00 Total: -1.00 -34.35 398.45 -9.59 -43.95 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.68 Total: 4.98 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.06 Total: 2.61 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: -1.45 Total: -56.37 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.38 Total: -18.18 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.35 -9.59 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672045344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.678 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds