Wall clock time and date at job start Tue Mar 31 2020 18:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46899 * 109.47107 * 331.17966 * 3 2 1 5 5 C 1.46847 * 110.99862 * 170.00246 * 4 3 2 6 6 C 1.53044 * 109.51335 * 174.15436 * 5 4 3 7 7 C 1.53119 * 109.27589 * 59.18419 * 6 5 4 8 8 C 1.50700 * 109.51956 * 182.44007 * 7 6 5 9 9 O 1.21292 * 119.99820 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00202 * 179.97438 * 8 7 6 11 11 C 1.46509 * 120.00187 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47057 * 180.02562 * 11 10 8 13 13 O 1.42904 * 110.88754 * 297.57529 * 12 11 10 14 14 C 1.55157 * 111.00168 * 173.65084 * 12 11 10 15 15 C 1.54333 * 102.93905 * 206.42452 * 14 12 11 16 16 N 1.47019 * 107.27193 * 22.19540 * 15 14 12 17 17 C 1.36933 * 125.64757 * 181.09675 * 16 15 14 18 18 H 1.08006 * 120.00003 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00123 * 359.95304 * 17 16 15 20 20 N 1.31618 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00167 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46822 * 90.00030 * 21 19 17 23 23 H 1.48497 * 109.47621 * 210.00124 * 21 19 17 24 24 H 1.48498 * 109.47523 * 330.00754 * 21 19 17 25 25 C 1.47425 * 108.70513 * 1.05474 * 16 15 14 26 26 C 1.53120 * 109.16202 * 302.34077 * 7 6 5 27 27 C 1.46847 * 110.99299 * 45.79404 * 4 3 2 28 28 H 4.40890 * 5.52167 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46438 * 211.17950 * 3 2 1 30 30 H 1.08997 * 109.46810 * 91.17923 * 3 2 1 31 31 H 1.09002 * 109.46448 * 54.14158 * 5 4 3 32 32 H 1.08994 * 109.45958 * 294.16523 * 5 4 3 33 33 H 1.09000 * 109.49745 * 179.12223 * 6 5 4 34 34 H 1.08999 * 109.49729 * 299.20033 * 6 5 4 35 35 H 1.09000 * 109.52607 * 62.31478 * 7 6 5 36 36 H 0.97001 * 120.00208 * 0.02562 * 10 8 7 37 37 H 1.09002 * 109.46862 * 300.00369 * 11 10 8 38 38 H 1.08996 * 109.46649 * 60.00617 * 11 10 8 39 39 H 0.96698 * 113.99755 * 59.30088 * 13 12 11 40 40 H 1.08990 * 110.72044 * 324.78508 * 14 12 11 41 41 H 1.08996 * 110.71646 * 88.06670 * 14 12 11 42 42 H 1.09003 * 109.88085 * 262.77612 * 15 14 12 43 43 H 1.09002 * 109.87893 * 141.61006 * 15 14 12 44 44 H 0.97000 * 120.00268 * 179.97438 * 20 19 17 45 45 H 1.09001 * 110.36776 * 217.03463 * 25 16 15 46 46 H 1.09005 * 110.45590 * 94.76134 * 25 16 15 47 47 H 1.08996 * 109.50328 * 177.59853 * 26 7 6 48 48 H 1.09004 * 109.50202 * 297.68149 * 26 7 6 49 49 H 1.09005 * 109.46836 * 65.83946 * 27 4 3 50 50 H 1.08995 * 109.45748 * 305.85482 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.2125 0.6676 5 6 4.5846 -1.3670 0.4813 6 6 5.0825 -2.5551 1.3076 7 6 4.3530 -3.8242 0.8586 8 6 4.7954 -4.9870 1.7091 9 8 5.6140 -4.8185 2.5881 10 7 4.2814 -6.2139 1.4931 11 6 4.7119 -7.3444 2.3197 12 6 3.9822 -8.6119 1.8701 13 8 2.5712 -8.4798 2.0538 14 6 4.5264 -9.8602 2.6138 15 6 4.2323 -11.0074 1.6243 16 7 4.0991 -10.4082 0.2883 17 6 3.8153 -11.0875 -0.8663 18 1 3.7377 -10.5534 -1.8018 19 6 3.6277 -12.4625 -0.8344 20 7 3.7221 -13.1133 0.3057 21 14 3.2398 -13.3890 -2.4094 22 1 4.5057 -13.8264 -3.0509 23 1 2.4088 -14.5782 -2.0924 24 1 2.4967 -12.4989 -3.3372 25 6 4.3207 -8.9548 0.3978 26 6 2.8439 -3.6193 1.0171 27 6 2.4109 -2.4004 0.1993 28 1 -1.0499 -0.0002 0.0003 29 1 3.0088 0.8801 0.5321 30 1 3.0093 0.0220 -1.0274 31 1 5.0917 -0.4592 0.8083 32 1 4.7984 -1.5428 -0.5729 33 1 6.1549 -2.6791 1.1570 34 1 4.8819 -2.3735 2.3635 35 1 4.5861 -4.0280 -0.1865 36 1 3.6270 -6.3488 0.7899 37 1 5.7871 -7.4862 2.2098 38 1 4.4771 -7.1408 3.3644 39 1 2.1787 -7.7419 1.5675 40 1 5.5980 -9.7677 2.7895 41 1 3.9924 -10.0135 3.5516 42 1 3.3037 -11.5067 1.9009 43 1 5.0556 -11.7218 1.6297 44 1 3.5907 -14.0741 0.3280 45 1 3.6565 -8.4177 -0.2792 46 1 5.3607 -8.7106 0.1808 47 1 2.3169 -4.5037 0.6590 48 1 2.6074 -3.4555 2.0685 49 1 2.6351 -2.5713 -0.8537 50 1 1.3393 -2.2431 0.3216 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672045344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:45 Heat of formation + Delta-G solvation = -26.593950 kcal Electronic energy + Delta-G solvation = -29312.684492 eV Core-core repulsion = 25340.910652 eV Total energy + Delta-G solvation = -3971.773840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.42177 -40.24056 -39.31336 -36.77504 -35.56862 -35.30681 -34.01358 -33.12406 -31.72837 -31.38616 -29.88271 -28.37484 -27.32335 -25.56272 -24.35821 -24.07120 -22.35630 -21.53976 -21.38801 -20.62653 -19.01175 -18.92806 -18.65694 -17.51517 -17.17615 -16.72841 -16.68506 -16.29032 -16.03148 -15.89725 -15.70095 -15.61611 -15.20917 -14.95163 -14.70214 -14.31990 -14.24475 -13.94975 -13.86828 -13.73994 -13.47538 -13.24621 -12.99226 -12.91047 -12.77809 -12.44725 -12.35064 -12.15971 -12.07965 -12.03213 -11.79907 -11.75488 -11.70939 -11.55013 -11.28844 -11.05541 -10.94992 -10.70119 -10.68399 -10.14637 -9.27913 -8.88996 -7.84607 -5.20191 1.45938 1.48149 1.56581 1.62585 1.76627 1.93299 2.11669 2.49196 3.08255 3.17947 3.34366 3.46834 3.47363 3.57355 3.66615 3.78939 3.85610 3.94179 3.98068 4.22863 4.24946 4.39488 4.43207 4.48646 4.55535 4.58871 4.59836 4.66691 4.71287 4.77249 4.81669 4.91402 4.93277 4.94325 4.96832 5.07514 5.11119 5.13729 5.19211 5.30840 5.40857 5.44282 5.63606 5.76083 6.02858 6.10563 6.18875 6.47731 6.70861 6.82535 7.09226 7.21263 7.76830 8.40964 9.26150 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.002333 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.692067 B =11998.997671 C =12941.660385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.215 4.215 3 C 0.161 3.839 4 N -0.550 5.550 5 C 0.061 3.939 6 C -0.093 4.093 7 C -0.101 4.101 8 C 0.519 3.481 9 O -0.580 6.580 10 N -0.717 5.717 11 C 0.119 3.881 12 C 0.123 3.877 13 O -0.552 6.552 14 C -0.122 4.122 15 C 0.190 3.810 16 N -0.621 5.621 17 C -0.240 4.240 18 H 0.086 0.914 19 C -0.070 4.070 20 N -0.953 5.953 21 Si 0.980 3.020 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.266 1.266 25 C 0.114 3.886 26 C -0.102 4.102 27 C 0.058 3.942 28 H 0.241 0.759 29 H 0.108 0.892 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.115 0.885 36 H 0.410 0.590 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.383 0.617 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.007 0.993 43 H 0.008 0.992 44 H 0.246 0.754 45 H 0.056 0.944 46 H 0.033 0.967 47 H 0.090 0.910 48 H 0.062 0.938 49 H 0.045 0.955 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 27.755 -1.124 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.216 4.216 3 C 0.035 3.965 4 N -0.275 5.275 5 C -0.066 4.066 6 C -0.131 4.131 7 C -0.123 4.123 8 C 0.307 3.693 9 O -0.460 6.460 10 N -0.370 5.370 11 C -0.006 4.006 12 C 0.081 3.919 13 O -0.359 6.359 14 C -0.161 4.161 15 C 0.065 3.935 16 N -0.347 5.347 17 C -0.369 4.369 18 H 0.104 0.896 19 C -0.263 4.263 20 N -0.602 5.602 21 Si 0.808 3.192 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.190 1.190 25 C -0.012 4.012 26 C -0.140 4.140 27 C -0.070 4.070 28 H 0.257 0.743 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.133 0.867 36 H 0.247 0.753 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.232 0.768 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.055 0.945 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.109 0.891 48 H 0.081 0.919 49 H 0.063 0.937 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.732 27.190 0.306 27.247 hybrid contribution -0.530 -0.900 -1.963 2.224 sum -2.262 26.291 -1.656 26.440 Atomic orbital electron populations 1.25675 0.96864 0.98813 0.99903 1.23274 0.95097 1.01783 1.01399 1.19153 0.84366 0.94185 0.98761 1.62047 1.04703 1.02463 1.58290 1.22123 0.86667 0.99090 0.98743 1.21343 0.99416 0.92022 1.00312 1.21431 0.97790 0.92552 1.00495 1.21103 0.80092 0.84228 0.83845 1.90690 1.35144 1.85051 1.35083 1.45906 1.45744 1.07742 1.37563 1.21705 0.99235 0.84206 0.95437 1.22385 0.81342 0.93300 0.94916 1.86617 1.20374 1.55785 1.73147 1.22797 1.01222 0.93360 0.98677 1.20827 0.97219 0.92093 0.83380 1.44636 1.83096 1.02688 1.04290 1.19467 1.40152 0.90369 0.86909 0.89575 1.25697 1.02736 0.97569 1.00262 1.70199 1.57256 1.07222 1.25508 0.85059 0.77449 0.77915 0.78786 1.21341 1.22387 1.19020 1.22344 0.98442 0.85270 0.95147 1.21565 0.92426 0.98615 1.01400 1.22104 0.98833 0.89181 0.96882 0.74296 0.87444 0.91277 0.88870 0.93168 0.90878 0.92219 0.86670 0.75315 0.90761 0.90807 0.76850 0.88823 0.90036 0.97429 0.97347 0.94501 0.92598 0.94894 0.89133 0.91891 0.93652 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.44 19.02 74.32 1.41 -1.03 16 2 C -0.22 -3.12 11.51 31.13 0.36 -2.76 16 3 C 0.16 1.88 5.77 84.50 0.49 2.36 16 4 N -0.55 -7.59 4.79 -907.45 -4.35 -11.94 16 5 C 0.06 0.72 5.43 86.33 0.47 1.19 16 6 C -0.09 -1.51 4.68 30.65 0.14 -1.37 16 7 C -0.10 -1.60 2.59 -11.46 -0.03 -1.62 16 8 C 0.52 11.81 7.16 87.66 0.63 12.43 16 9 O -0.58 -18.10 15.98 -3.07 -0.05 -18.15 16 10 N -0.72 -14.91 5.07 -463.04 -2.35 -17.26 16 11 C 0.12 3.10 4.90 86.38 0.42 3.52 16 12 C 0.12 3.89 0.95 -9.40 -0.01 3.88 16 13 O -0.55 -17.62 13.19 -148.98 -1.97 -19.59 16 14 C -0.12 -4.51 6.16 31.79 0.20 -4.31 16 15 C 0.19 9.56 5.37 86.73 0.47 10.02 16 16 N -0.62 -31.35 3.39 -691.95 -2.35 -33.70 16 17 C -0.24 -13.27 10.28 84.03 0.86 -12.40 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 20 N -0.95 -58.16 10.31 21.65 0.22 -57.94 16 21 Si 0.98 45.63 29.55 68.60 2.03 47.65 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 24 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 25 C 0.11 4.22 5.93 86.86 0.51 4.73 16 26 C -0.10 -1.41 5.26 30.65 0.16 -1.25 16 27 C 0.06 0.77 5.08 86.33 0.44 1.21 16 28 H 0.24 1.43 7.80 -4.42 -0.03 1.40 16 29 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 0.63 8.08 -2.39 -0.02 0.61 16 31 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 35 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.41 6.61 6.78 -92.71 -0.63 5.98 16 37 H 0.07 2.04 8.11 -2.39 -0.02 2.02 16 38 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.38 8.59 8.16 -74.06 -0.60 7.99 16 40 H 0.09 3.06 8.01 -2.39 -0.02 3.04 16 41 H 0.08 2.86 8.14 -2.39 -0.02 2.85 16 42 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 43 H 0.01 0.47 7.51 -2.39 -0.02 0.45 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.06 1.87 7.97 -2.39 -0.02 1.85 16 46 H 0.03 1.21 8.03 -2.38 -0.02 1.19 16 47 H 0.09 0.95 7.66 -2.39 -0.02 0.93 16 48 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 50 H 0.08 1.15 6.36 -2.39 -0.02 1.13 16 Total: -1.00 -76.40 398.45 -2.12 -78.52 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -0.30 Total: 21.33 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 6.99 Total: 11.07 kcal Atomic # 7 Polarization: -112.02 SS G_CDS: -8.82 Total: -120.84 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -2.01 Total: -37.74 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -76.40 -2.12 -78.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672045344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.931 kcal (2) G-P(sol) polarization free energy of solvation -76.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds