Wall clock time and date at job start Tue Mar 31 2020 18:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21589 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.47526 * 120.00107 * 180.02562 * 7 6 5 10 10 C 1.39986 * 120.59738 * 0.02562 * 9 7 6 11 11 C 1.38339 * 118.34827 * 180.02562 * 10 9 7 12 12 C 1.38350 * 119.45684 * 359.97438 * 11 10 9 13 13 N 1.31883 * 121.18856 * 0.02562 * 12 11 10 14 14 C 1.32233 * 121.80053 * 359.65325 * 13 12 11 15 15 O 1.35422 * 119.80262 * 180.31421 * 14 13 12 16 16 C 1.42898 * 117.00064 * 0.31823 * 15 14 13 17 17 C 1.53005 * 109.47354 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47199 * 174.99828 * 17 16 15 19 19 C 1.52998 * 109.46900 * 294.99823 * 17 16 15 20 20 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 3 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 3 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 31 31 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 32 32 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 33 33 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 34 34 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 35 35 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 36 36 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.82374 * 359.97438 * 10 9 7 38 38 H 1.07996 * 120.26603 * 180.02562 * 11 10 9 39 39 H 1.08003 * 119.40659 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.46927 * 300.00071 * 16 15 14 41 41 H 1.08995 * 109.47435 * 59.99324 * 16 15 14 42 42 H 1.08995 * 109.47009 * 54.99871 * 17 16 15 43 43 H 1.08997 * 109.47399 * 59.99665 * 18 17 16 44 44 H 1.08996 * 109.47090 * 179.97438 * 18 17 16 45 45 H 1.09004 * 109.47080 * 299.99606 * 18 17 16 46 46 H 1.08996 * 109.47143 * 180.02562 * 19 17 16 47 47 H 1.09002 * 109.46845 * 300.00298 * 19 17 16 48 48 H 1.08997 * 109.47373 * 59.99599 * 19 17 16 49 49 H 0.97000 * 119.99792 * 94.99575 * 20 3 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1652 2.1463 -0.2599 9 6 5.8873 4.4451 0.0344 10 6 5.0009 5.5100 0.2342 11 6 5.5218 6.7871 0.3409 12 6 6.8896 6.9739 0.2487 13 7 7.7067 5.9560 0.0602 14 6 7.2618 4.7150 -0.0423 15 8 8.1377 3.6993 -0.2292 16 6 9.5233 4.0419 -0.2987 17 6 10.3523 2.7737 -0.5119 18 6 11.8213 3.1521 -0.7108 19 6 10.2207 1.8666 0.7131 20 7 1.6525 2.0974 1.2520 21 6 0.4157 2.6733 1.3691 22 1 -0.2743 2.6445 0.5387 23 6 0.0465 3.2888 2.5573 24 7 0.8871 3.3235 3.5694 25 14 -1.6436 4.0677 2.7197 26 1 -2.3925 3.8949 1.4490 27 1 -2.3866 3.4122 3.8258 28 1 -1.4951 5.5158 3.0132 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0379 -1.0962 36 1 3.4410 3.5483 0.1316 37 1 3.9367 5.3389 0.3025 38 1 4.8662 7.6312 0.4958 39 1 7.2954 7.9712 0.3325 40 1 9.6869 4.7267 -1.1309 41 1 9.8259 4.5222 0.6317 42 1 9.9901 2.2470 -1.3947 43 1 12.1836 3.6789 0.1720 44 1 12.4119 2.2487 -0.8622 45 1 11.9151 3.7984 -1.5836 46 1 10.8116 0.9633 0.5615 47 1 10.5829 2.3934 1.5959 48 1 9.1741 1.5970 0.8549 49 1 2.2721 2.1229 1.9979 50 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698617649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:34 Heat of formation + Delta-G solvation = -44.522881 kcal Electronic energy + Delta-G solvation = -29344.278825 eV Core-core repulsion = 25371.727529 eV Total energy + Delta-G solvation = -3972.551297 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.85875 -38.93826 -38.20401 -36.63563 -35.36512 -33.75500 -32.71105 -32.21748 -30.67217 -29.74360 -27.91131 -27.27405 -26.64229 -24.74941 -23.62636 -22.95482 -22.30678 -20.53487 -20.16996 -19.85437 -18.55670 -17.63656 -17.00283 -16.94976 -16.30374 -15.44079 -15.25067 -15.06835 -14.88636 -14.48613 -14.24759 -14.18096 -13.95369 -13.46945 -13.37717 -13.07132 -13.04185 -12.89352 -12.72060 -12.55506 -12.34143 -12.31215 -12.10228 -11.48579 -11.43992 -11.18969 -10.99598 -10.92291 -10.83647 -10.74467 -10.71067 -10.43921 -10.20254 -10.02378 -10.00750 -9.96185 -9.56594 -9.39638 -8.98724 -8.67443 -8.43014 -7.06230 -5.84474 -3.13733 0.70629 1.22979 2.95698 3.12687 3.36248 3.43249 3.45229 3.52343 3.91610 4.20304 4.51291 4.63253 4.71248 4.77545 4.83016 4.89983 5.03283 5.19931 5.31568 5.37575 5.39812 5.42485 5.45306 5.49473 5.55458 5.56468 5.71660 5.78889 5.82814 5.91334 5.92246 5.95757 5.98254 6.04223 6.12909 6.18174 6.29684 6.32882 6.42552 6.54836 6.57716 6.60767 6.92173 7.02705 7.23072 7.25999 7.64218 7.69068 7.97965 8.32712 8.62412 9.44796 10.00143 10.36300 11.37268 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.002939 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.050197 B = 9525.042552 C =10957.446157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.117 3.883 6 N -0.710 5.710 7 C 0.559 3.441 8 O -0.529 6.529 9 C -0.204 4.204 10 C -0.003 4.003 11 C -0.219 4.219 12 C 0.159 3.841 13 N -0.550 5.550 14 C 0.370 3.630 15 O -0.265 6.265 16 C 0.070 3.930 17 C -0.095 4.095 18 C -0.143 4.143 19 C -0.148 4.148 20 N -0.722 5.722 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.407 0.593 37 H 0.150 0.850 38 H 0.143 0.857 39 H 0.162 0.838 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.057 0.943 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.069 0.931 49 H 0.385 0.615 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 4.237 -8.855 18.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.007 4.007 6 N -0.362 5.362 7 C 0.345 3.655 8 O -0.407 6.407 9 C -0.210 4.210 10 C -0.029 4.029 11 C -0.240 4.240 12 C 0.003 3.997 13 N -0.275 5.275 14 C 0.190 3.810 15 O -0.170 6.170 16 C -0.005 4.005 17 C -0.114 4.114 18 C -0.201 4.201 19 C -0.205 4.205 20 N -0.364 5.364 21 C -0.367 4.367 22 H 0.092 0.908 23 C -0.208 4.208 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.244 0.756 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.179 0.821 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.219 0.781 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.529 3.454 -9.098 19.181 hybrid contribution -1.931 0.919 0.696 2.249 sum 14.597 4.374 -8.401 17.401 Atomic orbital electron populations 1.21769 0.95746 0.99630 1.03217 1.22063 0.96928 0.98390 1.00066 1.20575 0.89975 0.92828 0.91386 0.92842 1.21662 0.95482 0.82403 1.01162 1.45845 1.06698 1.10833 1.72858 1.17740 0.82675 0.87494 0.77596 1.90787 1.55778 1.45097 1.49026 1.20117 0.91474 0.95757 1.13686 1.21824 1.00381 0.91396 0.89291 1.21942 0.96722 0.98145 1.07167 1.22600 0.89908 0.96875 0.90327 1.67462 1.40350 0.98946 1.20693 1.19805 0.87393 0.85716 0.88080 1.86511 1.16933 1.29249 1.84283 1.22788 0.78405 0.97347 1.02002 1.21134 0.94508 0.95331 1.00410 1.21763 0.94673 1.01789 1.01831 1.21822 1.03225 0.98846 0.96607 1.42481 1.16781 1.65845 1.11328 1.19252 0.91916 1.27684 0.97884 0.90847 1.24733 0.97982 1.01709 0.96353 1.69674 1.35036 1.49058 1.03876 0.86210 0.84238 0.78819 0.77475 1.20560 1.21953 1.21953 0.94883 0.89691 0.94132 0.93822 0.92500 0.91762 0.91801 0.75609 0.83201 0.83876 0.82105 0.91827 0.91713 0.90075 0.92430 0.91861 0.92505 0.92707 0.93021 0.91149 0.78072 0.93544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.18 37.16 0.34 -2.24 16 2 C -0.13 -2.29 5.61 -26.73 -0.15 -2.44 16 3 C 0.16 2.96 2.59 -67.93 -0.18 2.79 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.12 2.01 5.23 -4.04 -0.02 1.99 16 6 N -0.71 -12.07 5.34 -61.35 -0.33 -12.40 16 7 C 0.56 10.02 7.77 -12.48 -0.10 9.93 16 8 O -0.53 -10.84 15.19 -16.48 -0.25 -11.09 16 9 C -0.20 -3.23 5.90 -104.69 -0.62 -3.85 16 10 C 0.00 -0.04 9.64 -38.89 -0.37 -0.41 16 11 C -0.22 -2.38 10.09 -39.50 -0.40 -2.78 16 12 C 0.16 1.72 11.17 -17.49 -0.20 1.53 16 13 N -0.55 -7.45 9.21 -12.98 -0.12 -7.57 16 14 C 0.37 5.79 7.51 -16.61 -0.12 5.67 16 15 O -0.27 -4.23 7.75 -39.73 -0.31 -4.54 16 16 C 0.07 0.86 4.69 37.16 0.17 1.03 16 17 C -0.10 -1.01 3.16 -90.62 -0.29 -1.30 16 18 C -0.14 -1.13 9.19 37.16 0.34 -0.78 16 19 C -0.15 -1.65 9.09 37.16 0.34 -1.31 16 20 N -0.72 -16.10 4.51 -53.42 -0.24 -16.35 16 21 C -0.24 -5.84 7.75 -15.06 -0.12 -5.96 16 22 H 0.07 1.78 7.32 -52.49 -0.38 1.40 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 24 N -0.93 -26.24 13.06 55.49 0.72 -25.52 16 25 Si 0.90 21.07 29.55 -169.99 -5.02 16.04 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 1.77 5.99 -51.93 -0.31 1.45 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.41 6.78 6.24 -40.82 -0.25 6.52 16 37 H 0.15 1.88 6.52 -52.49 -0.34 1.54 16 38 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 39 H 0.16 1.14 8.06 -52.48 -0.42 0.72 16 40 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 41 H 0.06 0.77 8.11 -51.93 -0.42 0.35 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.98 7.82 -51.93 -0.41 0.58 16 49 H 0.39 9.49 7.80 -40.82 -0.32 9.17 16 50 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -30.38 408.11 -9.19 -39.57 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: -8.33 Total: 14.24 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.46 Total: 1.46 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.04 Total: -61.83 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.56 Total: -15.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.38 -9.19 -39.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.957 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds