Wall clock time and date at job start Tue Mar 31 2020 18:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47080 * 2 1 4 4 H 1.08994 * 109.47567 * 305.00833 * 3 2 1 5 5 C 1.52995 * 109.47104 * 185.00361 * 3 2 1 6 6 N 1.46500 * 109.47361 * 185.00342 * 5 3 2 7 7 C 1.34770 * 120.00423 * 180.02562 * 6 5 3 8 8 O 1.21589 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.47526 * 120.00107 * 180.02562 * 7 6 5 10 10 C 1.39986 * 120.59738 * 0.02562 * 9 7 6 11 11 C 1.38339 * 118.34827 * 180.02562 * 10 9 7 12 12 C 1.38350 * 119.45684 * 359.97438 * 11 10 9 13 13 N 1.31883 * 121.18856 * 0.02562 * 12 11 10 14 14 C 1.32233 * 121.80053 * 359.65325 * 13 12 11 15 15 O 1.35422 * 119.80262 * 180.31421 * 14 13 12 16 16 C 1.42898 * 117.00064 * 0.31823 * 15 14 13 17 17 C 1.53005 * 109.47354 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.47199 * 174.99828 * 17 16 15 19 19 C 1.52998 * 109.46900 * 294.99823 * 17 16 15 20 20 N 1.46505 * 109.46692 * 65.00756 * 3 2 1 21 21 C 1.36931 * 119.99788 * 274.99780 * 20 3 2 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 3 23 23 C 1.38817 * 119.99680 * 179.72358 * 21 20 3 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48508 * 109.46872 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 119.99997 * 25 23 21 28 28 H 1.48498 * 109.47018 * 240.00044 * 25 23 21 29 29 H 1.08999 * 109.47396 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46888 * 299.98914 * 1 2 3 31 31 H 1.08998 * 109.47562 * 59.98997 * 1 2 3 32 32 H 1.09005 * 109.46888 * 240.01086 * 2 1 3 33 33 H 1.08993 * 109.47875 * 120.00680 * 2 1 3 34 34 H 1.09005 * 109.47349 * 305.00426 * 5 3 2 35 35 H 1.09002 * 109.47351 * 65.00597 * 5 3 2 36 36 H 0.96998 * 119.99598 * 0.02562 * 6 5 3 37 37 H 1.07999 * 120.82374 * 359.97438 * 10 9 7 38 38 H 1.07996 * 120.26603 * 180.02562 * 11 10 9 39 39 H 1.08003 * 119.40659 * 180.02562 * 12 11 10 40 40 H 1.09003 * 109.46927 * 300.00071 * 16 15 14 41 41 H 1.08995 * 109.47435 * 59.99324 * 16 15 14 42 42 H 1.08995 * 109.47009 * 54.99871 * 17 16 15 43 43 H 1.08997 * 109.47399 * 59.99665 * 18 17 16 44 44 H 1.08996 * 109.47090 * 179.97438 * 18 17 16 45 45 H 1.09004 * 109.47080 * 299.99606 * 18 17 16 46 46 H 1.08996 * 109.47143 * 180.02562 * 19 17 16 47 47 H 1.09002 * 109.46845 * 300.00298 * 19 17 16 48 48 H 1.08997 * 109.47373 * 59.99599 * 19 17 16 49 49 H 0.97000 * 119.99792 * 94.99575 * 20 3 2 50 50 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 3.5647 1.4444 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3855 3.0631 -0.0869 8 8 6.1652 2.1463 -0.2599 9 6 5.8873 4.4451 0.0344 10 6 5.0009 5.5100 0.2342 11 6 5.5218 6.7871 0.3409 12 6 6.8896 6.9739 0.2487 13 7 7.7067 5.9560 0.0602 14 6 7.2618 4.7150 -0.0423 15 8 8.1377 3.6993 -0.2292 16 6 9.5233 4.0419 -0.2987 17 6 10.3523 2.7737 -0.5119 18 6 11.8213 3.1521 -0.7108 19 6 10.2207 1.8666 0.7131 20 7 1.6525 2.0974 1.2520 21 6 0.4157 2.6733 1.3691 22 1 -0.2743 2.6445 0.5387 23 6 0.0465 3.2888 2.5573 24 7 0.8871 3.3235 3.5694 25 14 -1.6436 4.0677 2.7197 26 1 -2.3925 3.8949 1.4490 27 1 -2.3866 3.4122 3.8258 28 1 -1.4951 5.5158 3.0132 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5140 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 3.9954 0.8311 0.6658 35 1 3.8498 1.0379 -1.0962 36 1 3.4410 3.5483 0.1316 37 1 3.9367 5.3389 0.3025 38 1 4.8662 7.6312 0.4958 39 1 7.2954 7.9712 0.3325 40 1 9.6869 4.7267 -1.1309 41 1 9.8259 4.5222 0.6317 42 1 9.9901 2.2470 -1.3947 43 1 12.1836 3.6789 0.1720 44 1 12.4119 2.2487 -0.8622 45 1 11.9151 3.7984 -1.5836 46 1 10.8116 0.9633 0.5615 47 1 10.5829 2.3934 1.5959 48 1 9.1741 1.5970 0.8549 49 1 2.2721 2.1229 1.9979 50 1 0.6292 3.7539 4.3996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698617649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:33 Heat of formation + Delta-G solvation = -63.621458 kcal Electronic energy + Delta-G solvation = -29345.107002 eV Core-core repulsion = 25371.727529 eV Total energy + Delta-G solvation = -3973.379473 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.94338 -40.27559 -39.23139 -38.20940 -36.25266 -35.26398 -34.26972 -33.51518 -31.70139 -31.45312 -29.43018 -28.07604 -27.56769 -26.07226 -25.23137 -24.15743 -23.57761 -21.76379 -21.45268 -21.06280 -19.66535 -19.24234 -18.46678 -18.03522 -17.34919 -16.97659 -16.61897 -16.18094 -16.01408 -15.79011 -15.56959 -15.47779 -15.15071 -14.99537 -14.55465 -14.46602 -14.21681 -14.04821 -13.91534 -13.67819 -13.54818 -13.32848 -13.02482 -12.97237 -12.79852 -12.76253 -12.34560 -12.33767 -12.06953 -12.06098 -11.85422 -11.71087 -11.62030 -11.59840 -11.32607 -11.19236 -11.03351 -10.90632 -10.60372 -10.04308 -9.52257 -8.96366 -7.85498 -5.12926 -0.34434 0.22182 1.50447 1.53553 1.60821 1.88657 1.96467 2.20926 2.61299 2.80798 3.25443 3.48248 3.71270 3.74195 3.82628 3.87727 3.91491 3.96503 3.99724 4.10821 4.25913 4.38524 4.44897 4.48876 4.49343 4.54855 4.57436 4.64848 4.76601 4.77359 4.88443 4.88690 4.94085 4.98645 5.10071 5.10420 5.14710 5.16936 5.22051 5.31595 5.37161 5.43662 5.48884 5.58565 5.63930 5.73182 6.24218 6.34192 6.55711 6.73570 7.24503 7.42239 8.13158 8.39005 9.37473 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013248 B = 0.002939 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.050197 B = 9525.042552 C =10957.446157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.061 0.939 5 C 0.125 3.875 6 N -0.707 5.707 7 C 0.556 3.444 8 O -0.564 6.564 9 C -0.234 4.234 10 C -0.008 4.008 11 C -0.209 4.209 12 C 0.167 3.833 13 N -0.556 5.556 14 C 0.353 3.647 15 O -0.291 6.291 16 C 0.069 3.931 17 C -0.094 4.094 18 C -0.136 4.136 19 C -0.144 4.144 20 N -0.728 5.728 21 C -0.213 4.213 22 H 0.081 0.919 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.305 1.305 28 H -0.297 1.297 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.409 0.591 37 H 0.152 0.848 38 H 0.178 0.822 39 H 0.206 0.794 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.033 0.967 49 H 0.372 0.628 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.598 5.680 -10.311 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.171 4.171 3 C 0.057 3.943 4 H 0.079 0.921 5 C 0.000 4.000 6 N -0.359 5.359 7 C 0.344 3.656 8 O -0.444 6.444 9 C -0.241 4.241 10 C -0.034 4.034 11 C -0.229 4.229 12 C 0.011 3.989 13 N -0.281 5.281 14 C 0.174 3.826 15 O -0.197 6.197 16 C -0.006 4.006 17 C -0.112 4.112 18 C -0.193 4.193 19 C -0.201 4.201 20 N -0.368 5.368 21 C -0.345 4.345 22 H 0.099 0.901 23 C -0.264 4.264 24 N -0.619 5.619 25 Si 0.789 3.211 26 H -0.191 1.191 27 H -0.233 1.233 28 H -0.224 1.224 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.246 0.754 37 H 0.170 0.830 38 H 0.195 0.805 39 H 0.223 0.777 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.052 0.948 49 H 0.204 0.796 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.828 4.884 -10.611 20.485 hybrid contribution -1.995 0.489 1.079 2.320 sum 14.834 5.373 -9.532 18.432 Atomic orbital electron populations 1.21695 0.95806 1.00608 1.01866 1.21990 0.96746 0.97331 1.00994 1.20706 0.90583 0.93364 0.89630 0.92085 1.21570 0.94542 0.82518 1.01341 1.45810 1.06642 1.10758 1.72642 1.18133 0.82457 0.88334 0.76700 1.90755 1.56479 1.46396 1.50798 1.20056 0.92293 0.95120 1.16588 1.21966 1.00212 0.91954 0.89254 1.22342 0.97361 0.97943 1.05216 1.23419 0.89905 0.97870 0.87724 1.67564 1.40917 0.98614 1.21010 1.19979 0.87370 0.86489 0.88807 1.86488 1.18398 1.30351 1.84417 1.22968 0.77165 0.98268 1.02224 1.21174 0.96163 0.94471 0.99436 1.21723 0.92371 1.02620 1.02597 1.21776 1.01089 0.99852 0.97406 1.42598 1.15867 1.66080 1.12270 1.19530 0.92332 1.25241 0.97397 0.90101 1.25356 1.00835 1.03614 0.96597 1.69821 1.36677 1.51162 1.04226 0.85292 0.81013 0.77467 0.77323 1.19053 1.23302 1.22410 0.92899 0.93190 0.93094 0.90738 0.93708 0.93311 0.90325 0.75400 0.83031 0.80456 0.77702 0.91188 0.91622 0.91255 0.91688 0.90692 0.91584 0.91187 0.92299 0.94756 0.79633 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.18 71.98 0.66 -4.10 16 2 C -0.13 -4.26 5.61 30.59 0.17 -4.08 16 3 C 0.17 5.91 2.59 44.99 0.12 6.03 16 4 H 0.06 2.12 8.08 -2.39 -0.02 2.11 16 5 C 0.12 4.28 5.23 86.38 0.45 4.73 16 6 N -0.71 -24.51 5.34 -466.29 -2.49 -27.00 16 7 C 0.56 20.70 7.77 86.69 0.67 21.38 16 8 O -0.56 -24.26 15.19 16.82 0.26 -24.01 16 9 C -0.23 -7.57 5.90 -19.91 -0.12 -7.69 16 10 C -0.01 -0.21 9.64 22.72 0.22 0.01 16 11 C -0.21 -3.98 10.09 22.32 0.23 -3.75 16 12 C 0.17 3.13 11.17 84.71 0.95 4.07 16 13 N -0.56 -14.38 9.21 -308.00 -2.84 -17.22 16 14 C 0.35 11.20 7.51 85.13 0.64 11.84 16 15 O -0.29 -9.68 7.75 -66.35 -0.51 -10.20 16 16 C 0.07 1.70 4.69 71.98 0.34 2.04 16 17 C -0.09 -2.00 3.16 -10.79 -0.03 -2.03 16 18 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 19 C -0.14 -3.30 9.09 71.98 0.65 -2.65 16 20 N -0.73 -32.57 4.51 -322.93 -1.46 -34.02 16 21 C -0.21 -10.46 7.75 84.04 0.65 -9.81 16 22 H 0.08 3.82 7.32 -2.91 -0.02 3.80 16 23 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 24 N -0.97 -55.86 13.06 21.65 0.28 -55.57 16 25 Si 0.96 43.51 29.55 68.60 2.03 45.54 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 2.02 5.99 -2.38 -0.01 2.01 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 35 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.41 13.80 6.24 -92.71 -0.58 13.22 16 37 H 0.15 3.75 6.52 -2.91 -0.02 3.73 16 38 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 39 H 0.21 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 41 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 42 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 46 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.03 1.02 7.82 -2.39 -0.02 1.00 16 49 H 0.37 18.75 7.80 -92.71 -0.72 18.03 16 50 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 Total: -1.00 -67.94 408.11 1.63 -66.31 By element: Atomic # 1 Polarization: 45.16 SS G_CDS: -0.36 Total: 44.79 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.72 Total: 11.38 kcal Atomic # 7 Polarization: -127.32 SS G_CDS: -6.50 Total: -133.82 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.26 Total: -34.20 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.94 1.63 -66.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698617649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.684 kcal (2) G-P(sol) polarization free energy of solvation -67.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds