Wall clock time and date at job start Tue Mar 31 2020 18:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 O 1.42895 * 109.47000 * 295.00282 * 3 2 1 7 7 C 1.35687 * 116.99677 * 150.00041 * 6 3 2 8 8 C 1.38892 * 119.62018 * 179.97438 * 7 6 3 9 9 C 1.39579 * 118.94717 * 179.97438 * 8 7 6 10 10 C 1.48155 * 120.89306 * 179.97438 * 9 8 7 11 11 O 1.21510 * 120.00037 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00169 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00471 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46700 * 34.99673 * 13 12 10 15 15 C 1.53001 * 109.46805 * 275.00118 * 13 12 10 16 16 C 1.52991 * 109.47410 * 154.99786 * 13 12 10 17 17 C 1.53001 * 109.47525 * 295.00133 * 16 13 12 18 18 N 1.46493 * 109.47426 * 179.97438 * 17 16 13 19 19 C 1.36938 * 119.99990 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99835 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00058 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99746 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47097 * 120.00448 * 23 21 19 26 26 H 1.48505 * 109.47024 * 240.00531 * 23 21 19 27 27 C 1.39961 * 118.21558 * 0.02562 * 9 8 7 28 28 C 1.37980 * 119.13346 * 359.97438 * 27 9 8 29 29 N 1.31903 * 120.97734 * 359.74401 * 28 27 9 30 30 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 31 31 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 32 32 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 34 34 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 37 37 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 38 38 H 1.08002 * 120.52851 * 0.02562 * 8 7 6 39 39 H 0.97003 * 119.99968 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47079 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46986 * 299.99643 * 15 13 12 42 42 H 1.09004 * 109.47145 * 59.99406 * 15 13 12 43 43 H 1.09002 * 109.46996 * 54.99880 * 16 13 12 44 44 H 1.09001 * 109.47166 * 174.99782 * 16 13 12 45 45 H 1.09002 * 109.46777 * 299.99881 * 17 16 13 46 46 H 1.09001 * 109.47185 * 59.99661 * 17 16 13 47 47 H 0.96999 * 119.99990 * 0.02562 * 18 17 16 48 48 H 0.97006 * 119.99826 * 179.97438 * 22 21 19 49 49 H 1.07999 * 120.43487 * 179.97438 * 27 9 8 50 50 H 1.08007 * 119.51275 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.4505 3.4209 -1.1755 8 6 1.0813 4.0973 -2.3311 9 6 0.8669 5.4751 -2.2682 10 6 0.4725 6.2394 -3.4745 11 8 0.3310 5.6671 -4.5370 12 7 0.2706 7.5695 -3.3934 13 6 -0.1200 8.3253 -4.5861 14 1 -0.7688 7.7101 -5.2097 15 6 1.1312 8.7115 -5.3775 16 6 -0.8683 9.5916 -4.1652 17 6 -2.1821 9.2047 -3.4830 18 7 -2.8983 10.4172 -3.0794 19 6 -4.1083 10.3188 -2.4459 20 1 -4.5344 9.3472 -2.2435 21 6 -4.7867 11.4677 -2.0630 22 7 -4.2672 12.6516 -2.3092 23 14 -6.4371 11.3334 -1.1981 24 1 -6.7980 9.9016 -1.0402 25 1 -6.3482 11.9716 0.1398 26 1 -7.4767 12.0203 -2.0061 27 6 1.0356 6.1154 -1.0351 28 6 1.4041 5.3684 0.0649 29 7 1.5929 4.0664 -0.0309 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9281 2.4721 0.1262 36 1 3.9994 0.9054 -0.7161 37 1 3.8532 0.9570 1.0571 38 1 0.9613 3.5655 -3.2634 39 1 0.3832 8.0263 -2.5451 40 1 0.8406 9.2734 -6.2651 41 1 1.7800 9.3266 -4.7539 42 1 1.6644 7.8093 -5.6773 43 1 -0.2529 10.1633 -3.4705 44 1 -1.0809 10.1977 -5.0458 45 1 -2.7975 8.6330 -4.1776 46 1 -1.9694 8.5986 -2.6023 47 1 -2.5158 11.2898 -3.2615 48 1 -4.7415 13.4545 -2.0419 49 1 0.8795 7.1803 -0.9457 50 1 1.5364 5.8563 1.0194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699146696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:20 Heat of formation + Delta-G solvation = -43.907882 kcal Electronic energy + Delta-G solvation = -28339.757803 eV Core-core repulsion = 24367.233174 eV Total energy + Delta-G solvation = -3972.524628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.14759 -39.86550 -38.42784 -36.60406 -34.61632 -34.40274 -33.12616 -31.84709 -30.92039 -30.37942 -30.01963 -27.91378 -25.43887 -24.34119 -23.91199 -23.50178 -22.18481 -21.46866 -20.74901 -20.49423 -18.99425 -17.54129 -17.16718 -16.63009 -16.16549 -16.01092 -15.78023 -15.14323 -14.97330 -14.65422 -14.50080 -14.30967 -14.09167 -14.00257 -13.78925 -13.54954 -13.47556 -13.35984 -12.91548 -12.87348 -12.47795 -12.29650 -12.20306 -12.10404 -11.91164 -11.46869 -11.25335 -11.12449 -11.06493 -10.99112 -10.83814 -10.70071 -10.59964 -10.31025 -10.16613 -10.04049 -9.80780 -9.73176 -9.12012 -8.89615 -8.80098 -6.95468 -5.79572 -3.08377 0.46495 0.87153 2.57801 2.75270 3.09965 3.41533 3.47626 3.49685 3.59696 3.96176 4.33593 4.37637 4.54718 4.57487 4.66083 4.71301 4.73386 4.83180 4.92890 5.01409 5.16897 5.19014 5.22356 5.29573 5.35449 5.41966 5.48150 5.52355 5.58127 5.60649 5.67883 5.69887 5.70915 5.77244 5.79495 5.88502 5.94622 5.97933 6.06666 6.19321 6.23494 6.29289 6.43742 6.76997 6.81779 6.97841 7.39767 7.51167 7.68444 8.06467 8.39430 9.50733 10.07951 10.42616 11.43323 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.002268 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.977722 B =12343.426870 C =13810.192589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.169 4.169 6 O -0.297 6.297 7 C 0.322 3.678 8 C -0.136 4.136 9 C -0.049 4.049 10 C 0.559 3.441 11 O -0.530 6.530 12 N -0.707 5.707 13 C 0.145 3.855 14 H 0.091 0.909 15 C -0.161 4.161 16 C -0.135 4.135 17 C 0.153 3.847 18 N -0.734 5.734 19 C -0.239 4.239 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.181 4.181 28 C 0.139 3.861 29 N -0.528 5.528 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.153 0.847 39 H 0.403 0.597 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.019 0.981 46 H 0.018 0.982 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.144 0.856 50 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.116 -20.297 4.092 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.028 3.972 4 H 0.109 0.891 5 C -0.227 4.227 6 O -0.204 6.204 7 C 0.143 3.857 8 C -0.157 4.157 9 C -0.060 4.060 10 C 0.344 3.656 11 O -0.407 6.407 12 N -0.359 5.359 13 C 0.040 3.960 14 H 0.109 0.891 15 C -0.220 4.220 16 C -0.174 4.174 17 C 0.026 3.974 18 N -0.378 5.378 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.205 1.205 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.202 4.202 28 C -0.016 4.016 29 N -0.252 5.252 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.171 0.829 39 H 0.238 0.762 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.162 0.838 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 18.067 -21.434 3.893 28.301 hybrid contribution -0.961 1.103 0.405 1.518 sum 17.106 -20.331 4.298 26.915 Atomic orbital electron populations 1.21768 0.95092 1.01907 1.02464 1.21693 0.96904 0.94168 1.03117 1.22447 0.95226 0.93183 0.86305 0.89094 1.22218 0.95020 1.02922 1.02493 1.86308 1.82313 1.15768 1.36034 1.19623 0.91932 0.84862 0.89324 1.21116 1.02624 0.93114 0.98863 1.20169 0.98163 0.93477 0.94157 1.18046 0.77597 0.82282 0.87627 1.90778 1.50980 1.69445 1.29464 1.46031 1.69076 1.07254 1.13559 1.21062 0.95944 0.92993 0.85973 0.89058 1.22168 0.97801 1.01673 1.00333 1.22079 0.97486 0.95796 1.02002 1.20641 0.90358 0.90696 0.95743 1.42367 1.21820 1.02908 1.70709 1.19271 0.95615 0.92654 1.29458 0.91196 1.24747 0.99092 0.95254 1.01968 1.69666 1.39237 0.96624 1.52695 0.86119 0.83855 0.77237 0.79015 1.20546 1.21838 1.21816 1.22211 1.03164 1.02004 0.92778 1.22385 0.92840 0.87627 0.98740 1.67135 1.19819 1.11767 1.26472 0.92707 0.92062 0.92401 0.90911 0.90014 0.91943 0.91952 0.91071 0.82932 0.76151 0.91297 0.92408 0.92337 0.91257 0.90002 0.96358 0.96424 0.78303 0.93554 0.83833 0.81623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.81 37.16 0.36 -0.78 16 2 C -0.12 -0.82 5.64 -26.73 -0.15 -0.97 16 3 C 0.08 0.72 2.49 -26.73 -0.07 0.65 16 4 H 0.09 0.83 6.97 -51.93 -0.36 0.47 16 5 C -0.17 -1.23 9.53 37.16 0.35 -0.87 16 6 O -0.30 -3.23 9.30 -18.76 -0.17 -3.41 16 7 C 0.32 3.71 7.45 -17.16 -0.13 3.59 16 8 C -0.14 -1.64 9.61 -38.84 -0.37 -2.01 16 9 C -0.05 -0.58 5.91 -104.68 -0.62 -1.19 16 10 C 0.56 7.58 7.76 -12.19 -0.09 7.48 16 11 O -0.53 -8.82 16.10 5.36 0.09 -8.73 16 12 N -0.71 -8.56 4.49 -54.65 -0.25 -8.80 16 13 C 0.14 1.87 2.57 -67.93 -0.17 1.70 16 14 H 0.09 1.34 7.58 -51.93 -0.39 0.95 16 15 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 16 C -0.14 -1.99 4.87 -26.73 -0.13 -2.12 16 17 C 0.15 2.99 6.15 -4.04 -0.02 2.96 16 18 N -0.73 -18.29 5.60 -59.91 -0.34 -18.63 16 19 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 20 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 23 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 C -0.18 -1.71 9.61 -39.03 -0.38 -2.08 16 28 C 0.14 1.26 11.17 -17.62 -0.20 1.06 16 29 N -0.53 -5.65 8.61 -13.38 -0.12 -5.77 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.15 1.86 7.74 -52.49 -0.41 1.46 16 39 H 0.40 4.12 6.74 -40.82 -0.28 3.85 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.02 0.34 7.75 -51.93 -0.40 -0.06 16 47 H 0.38 9.96 7.67 -40.82 -0.31 9.64 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.14 1.05 6.53 -52.49 -0.34 0.71 16 50 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 414.43 15.07 6.25 6.25 Total: -1.00 -33.29 414.43 -8.71 -42.01 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -8.37 Total: 8.42 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: -1.51 Total: -1.40 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.03 Total: -60.49 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.29 -8.71 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699146696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.902 kcal (2) G-P(sol) polarization free energy of solvation -33.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds