Wall clock time and date at job start Tue Mar 31 2020 18:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47054 * 2 1 4 4 H 1.08998 * 109.46505 * 54.99758 * 3 2 1 5 5 C 1.52997 * 109.47127 * 174.99886 * 3 2 1 6 6 O 1.42895 * 109.47000 * 295.00282 * 3 2 1 7 7 C 1.35687 * 116.99677 * 150.00041 * 6 3 2 8 8 C 1.38892 * 119.62018 * 179.97438 * 7 6 3 9 9 C 1.39579 * 118.94717 * 179.97438 * 8 7 6 10 10 C 1.48155 * 120.89306 * 179.97438 * 9 8 7 11 11 O 1.21510 * 120.00037 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00169 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00471 * 180.02562 * 12 10 9 14 14 H 1.09006 * 109.46700 * 34.99673 * 13 12 10 15 15 C 1.53001 * 109.46805 * 275.00118 * 13 12 10 16 16 C 1.52991 * 109.47410 * 154.99786 * 13 12 10 17 17 C 1.53001 * 109.47525 * 295.00133 * 16 13 12 18 18 N 1.46493 * 109.47426 * 179.97438 * 17 16 13 19 19 C 1.36938 * 119.99990 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99770 * 0.02562 * 19 18 17 21 21 C 1.38815 * 119.99835 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00058 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99746 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46954 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47097 * 120.00448 * 23 21 19 26 26 H 1.48505 * 109.47024 * 240.00531 * 23 21 19 27 27 C 1.39961 * 118.21558 * 0.02562 * 9 8 7 28 28 C 1.37980 * 119.13346 * 359.97438 * 27 9 8 29 29 N 1.31903 * 120.97734 * 359.74401 * 28 27 9 30 30 H 1.08994 * 109.47518 * 299.99758 * 1 2 3 31 31 H 1.09001 * 109.47018 * 59.99856 * 1 2 3 32 32 H 1.09002 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47070 * 240.00530 * 2 1 3 34 34 H 1.09001 * 109.47018 * 120.00144 * 2 1 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 5 3 2 36 36 H 1.09001 * 109.46832 * 60.00321 * 5 3 2 37 37 H 1.09004 * 109.47261 * 300.00303 * 5 3 2 38 38 H 1.08002 * 120.52851 * 0.02562 * 8 7 6 39 39 H 0.97003 * 119.99968 * 359.97438 * 12 10 9 40 40 H 1.08996 * 109.47079 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.46986 * 299.99643 * 15 13 12 42 42 H 1.09004 * 109.47145 * 59.99406 * 15 13 12 43 43 H 1.09002 * 109.46996 * 54.99880 * 16 13 12 44 44 H 1.09001 * 109.47166 * 174.99782 * 16 13 12 45 45 H 1.09002 * 109.46777 * 299.99881 * 17 16 13 46 46 H 1.09001 * 109.47185 * 59.99661 * 17 16 13 47 47 H 0.96999 * 119.99990 * 0.02562 * 18 17 16 48 48 H 0.97006 * 119.99826 * 179.97438 * 22 21 19 49 49 H 1.07999 * 120.43487 * 179.97438 * 27 9 8 50 50 H 1.08007 * 119.51275 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.4505 3.4209 -1.1755 8 6 1.0813 4.0973 -2.3311 9 6 0.8669 5.4751 -2.2682 10 6 0.4725 6.2394 -3.4745 11 8 0.3310 5.6671 -4.5370 12 7 0.2706 7.5695 -3.3934 13 6 -0.1200 8.3253 -4.5861 14 1 -0.7688 7.7101 -5.2097 15 6 1.1312 8.7115 -5.3775 16 6 -0.8683 9.5916 -4.1652 17 6 -2.1821 9.2047 -3.4830 18 7 -2.8983 10.4172 -3.0794 19 6 -4.1083 10.3188 -2.4459 20 1 -4.5344 9.3472 -2.2435 21 6 -4.7867 11.4677 -2.0630 22 7 -4.2672 12.6516 -2.3092 23 14 -6.4371 11.3334 -1.1981 24 1 -6.7980 9.9016 -1.0402 25 1 -6.3482 11.9716 0.1398 26 1 -7.4767 12.0203 -2.0061 27 6 1.0356 6.1154 -1.0351 28 6 1.4041 5.3684 0.0649 29 7 1.5929 4.0664 -0.0309 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9281 2.4721 0.1262 36 1 3.9994 0.9054 -0.7161 37 1 3.8532 0.9570 1.0571 38 1 0.9613 3.5655 -3.2634 39 1 0.3832 8.0263 -2.5451 40 1 0.8406 9.2734 -6.2651 41 1 1.7800 9.3266 -4.7539 42 1 1.6644 7.8093 -5.6773 43 1 -0.2529 10.1633 -3.4705 44 1 -1.0809 10.1977 -5.0458 45 1 -2.7975 8.6330 -4.1776 46 1 -1.9694 8.5986 -2.6023 47 1 -2.5158 11.2898 -3.2615 48 1 -4.7415 13.4545 -2.0419 49 1 0.8795 7.1803 -0.9457 50 1 1.5364 5.8563 1.0194 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699146696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:19 Heat of formation + Delta-G solvation = -66.112206 kcal Electronic energy + Delta-G solvation = -28340.720654 eV Core-core repulsion = 24367.233174 eV Total energy + Delta-G solvation = -3973.487480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.00036 -40.85989 -39.23480 -37.90063 -36.15285 -35.24002 -34.14538 -33.40819 -32.10983 -31.28982 -30.70907 -29.41832 -26.38009 -25.77796 -24.93389 -24.27328 -23.38879 -22.70020 -21.81196 -21.40186 -19.91665 -19.14133 -18.37749 -17.63022 -17.08297 -16.83427 -16.75466 -16.61409 -16.08930 -15.79872 -15.49825 -15.32229 -15.20584 -15.03910 -14.96730 -14.76277 -14.68323 -14.27717 -14.14599 -13.69829 -13.52378 -13.11560 -13.03185 -12.91327 -12.90549 -12.88265 -12.69993 -12.39452 -12.23990 -12.05507 -11.99432 -11.94927 -11.77262 -11.65048 -11.61875 -11.35133 -11.06859 -10.95919 -10.67437 -10.18438 -9.59177 -9.00748 -7.96596 -5.25159 -0.43012 0.07158 1.47175 1.47857 1.57782 1.73443 1.76784 2.18062 2.54864 2.74120 3.22430 3.37277 3.44726 3.63325 3.75029 3.86527 3.94690 3.97955 4.01113 4.05544 4.16519 4.18498 4.38182 4.41637 4.56327 4.56859 4.60731 4.64622 4.66627 4.71618 4.77817 4.78793 4.84517 4.94570 4.99743 5.00200 5.03507 5.10118 5.18983 5.20183 5.27400 5.33354 5.34511 5.36439 5.48526 5.49649 6.21598 6.26365 6.40249 6.71226 7.04249 7.33166 8.08288 8.32364 9.26726 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.002268 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.977722 B =12343.426870 C =13810.192589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.085 0.915 5 C -0.164 4.164 6 O -0.310 6.310 7 C 0.314 3.686 8 C -0.154 4.154 9 C -0.060 4.060 10 C 0.559 3.441 11 O -0.568 6.568 12 N -0.698 5.698 13 C 0.151 3.849 14 H 0.071 0.929 15 C -0.154 4.154 16 C -0.119 4.119 17 C 0.152 3.848 18 N -0.745 5.745 19 C -0.246 4.246 20 H 0.070 0.930 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.971 3.029 24 H -0.270 1.270 25 H -0.290 1.290 26 H -0.293 1.293 27 C -0.173 4.173 28 C 0.143 3.857 29 N -0.531 5.531 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.140 0.860 39 H 0.414 0.586 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.049 0.951 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.006 0.994 46 H 0.025 0.975 47 H 0.376 0.624 48 H 0.252 0.748 49 H 0.169 0.831 50 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.915 -20.595 5.793 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.103 0.897 5 C -0.221 4.221 6 O -0.218 6.218 7 C 0.136 3.864 8 C -0.176 4.176 9 C -0.070 4.070 10 C 0.345 3.655 11 O -0.448 6.448 12 N -0.350 5.350 13 C 0.046 3.954 14 H 0.090 0.910 15 C -0.212 4.212 16 C -0.157 4.157 17 C 0.026 3.974 18 N -0.388 5.388 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.266 4.266 22 N -0.617 5.617 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.221 1.221 27 C -0.193 4.193 28 C -0.013 4.013 29 N -0.256 5.256 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.157 0.843 39 H 0.252 0.748 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.024 0.976 46 H 0.043 0.957 47 H 0.209 0.791 48 H 0.061 0.939 49 H 0.186 0.814 50 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 18.884 -21.762 5.604 29.353 hybrid contribution -1.187 1.148 -0.105 1.655 sum 17.696 -20.614 5.499 27.719 Atomic orbital electron populations 1.21762 0.95736 1.02381 1.01329 1.21726 0.96292 0.93233 1.04248 1.22670 0.96076 0.93760 0.85196 0.89743 1.22187 0.93983 1.02339 1.03618 1.86296 1.82384 1.15653 1.37472 1.19653 0.92181 0.85224 0.89382 1.21087 1.04050 0.93606 0.98847 1.20086 0.99268 0.93286 0.94406 1.18315 0.76927 0.82520 0.87695 1.90756 1.52806 1.70204 1.31019 1.45949 1.68326 1.06871 1.13898 1.20923 0.96480 0.91790 0.86182 0.91037 1.22094 0.96754 1.01647 1.00696 1.21909 0.95264 0.96615 1.01889 1.20782 0.91915 0.88817 0.95925 1.42549 1.21497 1.04192 1.70514 1.19607 0.96657 0.92632 1.28850 0.91179 1.25529 1.02581 0.95067 1.03378 1.69800 1.40626 0.97097 1.54134 0.85118 0.79690 0.77559 0.77658 1.19418 1.21659 1.22055 1.22486 1.01930 1.03184 0.91711 1.23033 0.91196 0.87048 0.99978 1.67231 1.19801 1.12637 1.25921 0.92826 0.94171 0.91128 0.90888 0.87657 0.93244 0.91914 0.88971 0.84251 0.74828 0.90275 0.90791 0.93176 0.89813 0.89841 0.97648 0.95737 0.79140 0.93905 0.81361 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.81 71.98 0.71 -1.52 16 2 C -0.12 -1.47 5.64 30.60 0.17 -1.29 16 3 C 0.08 1.28 2.49 30.60 0.08 1.36 16 4 H 0.08 1.48 6.97 -2.39 -0.02 1.46 16 5 C -0.16 -2.20 9.53 71.98 0.69 -1.51 16 6 O -0.31 -6.90 9.30 -90.06 -0.84 -7.73 16 7 C 0.31 7.31 7.45 84.80 0.63 7.94 16 8 C -0.15 -3.86 9.61 22.75 0.22 -3.64 16 9 C -0.06 -1.39 5.91 -19.90 -0.12 -1.51 16 10 C 0.56 15.12 7.76 86.88 0.67 15.80 16 11 O -0.57 -19.52 16.10 -3.75 -0.06 -19.58 16 12 N -0.70 -16.07 4.49 -445.11 -2.00 -18.07 16 13 C 0.15 3.75 2.57 44.99 0.12 3.87 16 14 H 0.07 2.10 7.58 -2.38 -0.02 2.09 16 15 C -0.15 -3.17 9.48 71.98 0.68 -2.49 16 16 C -0.12 -3.31 4.87 30.59 0.15 -3.17 16 17 C 0.15 5.81 6.15 86.38 0.53 6.34 16 18 N -0.74 -36.79 5.60 -343.46 -1.92 -38.72 16 19 C -0.25 -13.62 9.99 84.03 0.84 -12.78 16 20 H 0.07 3.81 7.83 -2.91 -0.02 3.78 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -57.99 13.06 21.65 0.28 -57.71 16 23 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 27 C -0.17 -2.92 9.61 22.63 0.22 -2.70 16 28 C 0.14 2.25 11.17 84.62 0.94 3.19 16 29 N -0.53 -10.80 8.61 -309.14 -2.66 -13.46 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.04 0.73 7.82 -2.39 -0.02 0.72 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.14 3.74 7.74 -2.91 -0.02 3.71 16 39 H 0.41 7.55 6.74 -92.71 -0.62 6.92 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.02 0.92 7.75 -2.39 -0.02 0.90 16 47 H 0.38 19.45 7.67 -92.71 -0.71 18.74 16 48 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 49 H 0.17 1.92 6.53 -2.91 -0.02 1.90 16 50 H 0.20 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -72.15 414.43 1.43 -70.72 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.40 Total: 32.55 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 7.00 Total: 4.21 kcal Atomic # 7 Polarization: -121.65 SS G_CDS: -6.30 Total: -127.95 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.90 Total: -27.31 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -72.15 1.43 -70.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699146696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.612 kcal (2) G-P(sol) polarization free energy of solvation -72.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds