Wall clock time and date at job start Tue Mar 31 2020 19:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47231 * 257.41877 * 3 2 1 5 5 C 1.34777 * 120.00290 * 270.00515 * 4 3 2 6 6 O 1.21279 * 120.00328 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99776 * 359.97438 * 5 4 3 8 8 C 1.53004 * 109.47014 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47048 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47405 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47626 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00356 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99765 * 359.97438 * 11 10 9 14 14 C 1.46504 * 119.99980 * 90.00252 * 4 3 2 15 15 C 1.53081 * 109.43848 * 299.79571 * 14 4 3 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 4 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 59.99966 * 14 4 3 28 28 H 4.40644 * 5.51532 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.46759 * 137.42381 * 3 2 1 30 30 H 1.08993 * 109.47096 * 17.42253 * 3 2 1 31 31 H 1.09007 * 109.47134 * 300.00098 * 7 5 4 32 32 H 1.08995 * 109.47349 * 60.00416 * 7 5 4 33 33 H 1.08999 * 109.46820 * 299.99470 * 8 7 5 34 34 H 1.08995 * 109.47074 * 59.99817 * 8 7 5 35 35 H 1.09001 * 109.47067 * 300.00075 * 9 8 7 36 36 H 1.09007 * 109.47560 * 59.99538 * 9 8 7 37 37 H 1.09001 * 109.47267 * 300.00195 * 10 9 8 38 38 H 1.09004 * 109.46776 * 59.99901 * 10 9 8 39 39 H 0.97000 * 119.99783 * 359.97438 * 12 11 10 40 40 H 0.96996 * 119.99891 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.46073 * 179.97438 * 14 4 3 42 42 H 1.08992 * 109.38800 * 61.36034 * 15 14 4 43 43 H 1.09002 * 109.61927 * 301.25313 * 15 14 4 44 44 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 45 45 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 46 46 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 48 48 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 49 49 H 1.09002 * 109.49848 * 58.67960 * 27 14 4 50 50 H 1.09002 * 109.52425 * 298.59433 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3017 1.3480 5 6 3.3582 1.5794 1.7140 6 8 3.7619 1.8287 2.8301 7 6 3.1069 2.6983 0.7362 8 6 3.4382 4.0376 1.3977 9 6 3.1825 5.1736 0.4052 10 6 3.5131 6.5129 1.0668 11 6 3.2619 7.6318 0.0891 12 7 3.4863 8.9095 0.4548 13 8 2.8586 7.3825 -1.0273 14 6 3.3789 -0.7860 2.2984 15 6 2.0760 -1.5516 2.5430 16 6 2.3287 -2.6686 3.5604 17 7 3.4415 -3.5020 3.0854 18 6 3.2972 -4.8589 2.9698 19 1 3.8869 -5.4053 2.2486 20 6 2.3928 -5.5321 3.7797 21 7 1.9481 -6.7190 3.4245 22 14 1.8068 -4.7537 5.3734 23 1 0.5508 -4.0017 5.1245 24 1 1.5566 -5.8159 6.3805 25 1 2.8475 -3.8244 5.8824 26 6 4.7124 -2.8522 2.7372 27 6 4.4342 -1.7352 1.7262 28 1 -1.0501 0.0002 -0.0001 29 1 3.0089 0.7576 -0.6953 30 1 3.0097 -0.9796 -0.3077 31 1 3.7375 2.5615 -0.1424 32 1 2.0591 2.6902 0.4362 33 1 2.8078 4.1746 2.2763 34 1 4.4861 4.0454 1.6974 35 1 3.8124 5.0368 -0.4738 36 1 2.1344 5.1656 0.1058 37 1 2.8828 6.6495 1.9456 38 1 4.5611 6.5212 1.3664 39 1 3.8092 9.1088 1.3475 40 1 3.3250 9.6296 -0.1747 41 1 3.7363 -0.3713 3.2409 42 1 1.7297 -1.9854 1.6050 43 1 1.3186 -0.8705 2.9310 44 1 1.4320 -3.2798 3.6623 45 1 2.5852 -2.2324 4.5259 46 1 1.3159 -7.1892 3.9903 47 1 5.1642 -2.4288 3.6343 48 1 5.3893 -3.5850 2.2980 49 1 5.3536 -1.1827 1.5323 50 1 4.0676 -2.1694 0.7961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699785168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:34 Heat of formation + Delta-G solvation = -9.651224 kcal Electronic energy + Delta-G solvation = -29038.263006 eV Core-core repulsion = 25067.223858 eV Total energy + Delta-G solvation = -3971.039148 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.29849 -39.85151 -37.83616 -35.82917 -35.39231 -34.08914 -33.15147 -32.19127 -31.20627 -30.42344 -30.06425 -27.21717 -26.23999 -24.62137 -22.87032 -22.26302 -21.40952 -20.70189 -19.65474 -19.50057 -17.99206 -17.68658 -17.25051 -16.92604 -16.73471 -16.47036 -16.02976 -15.63315 -15.05537 -14.64721 -14.31706 -14.19217 -13.88958 -13.77056 -13.73156 -13.38105 -13.22743 -12.98388 -12.70920 -12.65040 -12.39658 -12.05682 -11.85786 -11.73424 -11.63690 -11.42398 -11.06846 -10.88813 -10.85242 -10.60801 -10.46940 -10.36851 -10.20873 -10.17108 -10.14032 -10.07252 -9.82609 -9.59707 -9.46982 -8.68319 -8.58688 -6.98911 -5.94890 -3.30663 2.23830 2.43142 2.67424 2.81520 3.08543 3.33326 3.35786 3.49818 3.53552 4.31928 4.38240 4.43237 4.53738 4.58946 4.62412 4.91610 4.94845 4.99093 5.07773 5.18329 5.21108 5.26723 5.35963 5.40394 5.42341 5.48393 5.53309 5.68964 5.70857 5.82440 5.90167 5.97748 6.04228 6.04872 6.12638 6.19356 6.31783 6.32061 6.42052 6.59675 6.63093 6.68052 6.71864 6.86336 6.90664 7.42269 7.59149 7.83542 7.95911 8.19328 8.32572 8.93668 9.72158 10.09775 11.20928 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.002196 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.333783 B =12747.713822 C =13022.439378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.206 4.206 3 C 0.215 3.785 4 N -0.603 5.603 5 C 0.515 3.485 6 O -0.540 6.540 7 C -0.141 4.141 8 C -0.104 4.104 9 C -0.105 4.105 10 C -0.142 4.142 11 C 0.515 3.485 12 N -0.860 5.860 13 O -0.544 6.544 14 C 0.144 3.856 15 C -0.136 4.136 16 C 0.129 3.871 17 N -0.605 5.605 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.881 3.119 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.270 1.270 26 C 0.151 3.849 27 C -0.141 4.141 28 H 0.216 0.784 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.402 0.598 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.026 0.974 46 H 0.262 0.738 47 H 0.025 0.975 48 H 0.067 0.933 49 H 0.059 0.941 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 27.619 -7.173 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.207 4.207 3 C 0.093 3.907 4 N -0.335 5.335 5 C 0.304 3.696 6 O -0.417 6.417 7 C -0.181 4.181 8 C -0.142 4.142 9 C -0.143 4.143 10 C -0.182 4.182 11 C 0.300 3.700 12 N -0.424 5.424 13 O -0.420 6.420 14 C 0.042 3.958 15 C -0.176 4.176 16 C 0.003 3.997 17 N -0.329 5.329 18 C -0.387 4.387 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.551 5.551 22 Si 0.711 3.289 23 H -0.217 1.217 24 H -0.231 1.231 25 H -0.195 1.195 26 C 0.025 3.975 27 C -0.181 4.181 28 H 0.233 0.767 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.230 0.770 40 H 0.230 0.770 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.044 0.956 46 H 0.072 0.928 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.551 27.215 -7.196 28.266 hybrid contribution -0.734 0.723 1.063 1.481 sum 1.817 27.938 -6.132 28.661 Atomic orbital electron populations 1.24935 0.95938 1.00627 0.98704 1.23490 0.94885 1.00800 1.01546 1.18413 0.83874 1.03906 0.84541 1.48256 1.64877 1.06632 1.13724 1.20737 0.76813 0.83540 0.88551 1.90682 1.45891 1.83316 1.21850 1.21730 1.03970 0.93651 0.98757 1.21351 1.02964 0.91740 0.98128 1.21371 1.02994 0.91637 0.98339 1.21694 1.04223 0.93736 0.98596 1.20863 0.76139 0.84358 0.88613 1.43950 1.71028 1.08271 1.19121 1.90760 1.45272 1.83982 1.22031 1.21179 0.96149 0.85796 0.92665 1.22367 0.95876 0.97812 1.01594 1.21314 0.92496 0.91758 0.94161 1.44384 1.07082 1.03752 1.77696 1.18909 1.22946 0.80969 1.15898 0.89640 1.25275 0.98612 0.95405 0.98242 1.69838 1.32435 1.14997 1.37812 0.86980 0.78455 0.77847 0.85570 1.21691 1.23123 1.19493 1.20883 0.88621 0.93140 0.94898 1.22385 0.97524 0.97428 1.00721 0.76746 0.88242 0.87427 0.88827 0.88867 0.91123 0.91016 0.91048 0.91098 0.88614 0.88587 0.77010 0.77006 0.88451 0.91348 0.92800 0.90736 0.95624 0.92792 0.95725 0.91430 0.92255 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 19.25 29.55 0.57 -1.57 16 2 C -0.21 -2.54 11.92 -37.12 -0.44 -2.98 16 3 C 0.22 2.38 5.16 -6.83 -0.04 2.35 16 4 N -0.60 -8.19 2.37 -169.35 -0.40 -8.59 16 5 C 0.51 6.98 7.67 -10.98 -0.08 6.90 16 6 O -0.54 -9.24 15.31 5.56 0.09 -9.16 16 7 C -0.14 -1.33 4.25 -27.88 -0.12 -1.45 16 8 C -0.10 -0.90 4.50 -26.73 -0.12 -1.02 16 9 C -0.11 -0.80 4.50 -26.73 -0.12 -0.92 16 10 C -0.14 -0.81 5.70 -27.89 -0.16 -0.97 16 11 C 0.51 3.90 8.10 -10.99 -0.09 3.82 16 12 N -0.86 -3.33 8.87 31.22 0.28 -3.05 16 13 O -0.54 -6.64 16.82 5.55 0.09 -6.55 16 14 C 0.14 2.37 2.48 -67.87 -0.17 2.20 16 15 C -0.14 -2.52 4.75 -26.59 -0.13 -2.64 16 16 C 0.13 2.87 4.20 -3.71 -0.02 2.86 16 17 N -0.61 -14.31 2.77 -172.32 -0.48 -14.79 16 18 C -0.26 -7.19 10.03 -15.06 -0.15 -7.34 16 19 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 20 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 21 N -0.91 -27.81 13.97 55.49 0.78 -27.03 16 22 Si 0.88 22.66 24.34 -169.99 -4.14 18.52 16 23 H -0.29 -7.21 6.62 56.52 0.37 -6.84 16 24 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 25 H -0.27 -6.87 6.64 56.52 0.38 -6.50 16 26 C 0.15 2.94 6.52 -3.71 -0.02 2.91 16 27 C -0.14 -2.25 5.31 -26.61 -0.14 -2.39 16 28 H 0.22 1.85 7.80 -54.08 -0.42 1.43 16 29 H 0.10 0.79 6.44 -51.93 -0.33 0.45 16 30 H 0.11 1.20 6.45 -51.93 -0.34 0.86 16 31 H 0.09 0.70 7.40 -51.93 -0.38 0.31 16 32 H 0.09 0.83 7.95 -51.93 -0.41 0.42 16 33 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 35 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 36 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 37 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.40 0.36 8.83 -40.82 -0.36 0.00 16 40 H 0.40 1.33 8.93 -40.82 -0.36 0.96 16 41 H 0.10 1.80 6.90 -51.93 -0.36 1.44 16 42 H 0.07 1.29 7.01 -51.93 -0.36 0.93 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.82 4.50 -51.93 -0.23 1.58 16 45 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 49 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 1.04 6.72 -51.93 -0.35 0.69 16 LS Contribution 397.81 15.07 5.99 5.99 Total: -1.00 -36.56 397.81 -7.21 -43.77 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.11 Total: 0.54 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.34 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: 0.17 Total: -53.46 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: 0.18 Total: -15.71 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.14 Total: 18.52 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.56 -7.21 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699785168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.122 kcal (2) G-P(sol) polarization free energy of solvation -36.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds