Wall clock time and date at job start Tue Mar 31 2020 19:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17391 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47231 * 257.41877 * 3 2 1 5 5 C 1.34777 * 120.00290 * 270.00515 * 4 3 2 6 6 O 1.21279 * 120.00328 * 179.97438 * 5 4 3 7 7 C 1.50702 * 119.99776 * 359.97438 * 5 4 3 8 8 C 1.53004 * 109.47014 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47048 * 180.02562 * 8 7 5 10 10 C 1.52995 * 109.47405 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47626 * 179.97438 * 10 9 8 12 12 N 1.34779 * 120.00356 * 180.02562 * 11 10 9 13 13 O 1.21288 * 119.99765 * 359.97438 * 11 10 9 14 14 C 1.46504 * 119.99980 * 90.00252 * 4 3 2 15 15 C 1.53081 * 109.43848 * 299.79571 * 14 4 3 16 16 C 1.53190 * 109.29209 * 181.23616 * 15 14 4 17 17 N 1.46921 * 108.89311 * 305.57883 * 16 15 14 18 18 C 1.36940 * 120.63187 * 233.51481 * 17 16 15 19 19 H 1.08001 * 120.00319 * 152.61971 * 18 17 16 20 20 C 1.38813 * 119.99903 * 332.62203 * 18 17 16 21 21 N 1.31624 * 120.00070 * 159.34992 * 20 18 17 22 22 Si 1.86800 * 120.00077 * 339.35529 * 20 18 17 23 23 H 1.48494 * 109.47321 * 92.87851 * 22 20 18 24 24 H 1.48501 * 109.47194 * 212.88430 * 22 20 18 25 25 H 1.48509 * 109.46983 * 332.87654 * 22 20 18 26 26 C 1.46923 * 118.74178 * 53.54201 * 17 16 15 27 27 C 1.53035 * 109.45960 * 59.99966 * 14 4 3 28 28 H 4.40644 * 5.51532 * 179.97438 * 4 1 2 29 29 H 1.08999 * 109.46759 * 137.42381 * 3 2 1 30 30 H 1.08993 * 109.47096 * 17.42253 * 3 2 1 31 31 H 1.09007 * 109.47134 * 300.00098 * 7 5 4 32 32 H 1.08995 * 109.47349 * 60.00416 * 7 5 4 33 33 H 1.08999 * 109.46820 * 299.99470 * 8 7 5 34 34 H 1.08995 * 109.47074 * 59.99817 * 8 7 5 35 35 H 1.09001 * 109.47067 * 300.00075 * 9 8 7 36 36 H 1.09007 * 109.47560 * 59.99538 * 9 8 7 37 37 H 1.09001 * 109.47267 * 300.00195 * 10 9 8 38 38 H 1.09004 * 109.46776 * 59.99901 * 10 9 8 39 39 H 0.97000 * 119.99783 * 359.97438 * 12 11 10 40 40 H 0.96996 * 119.99891 * 179.97438 * 12 11 10 41 41 H 1.08998 * 109.46073 * 179.97438 * 14 4 3 42 42 H 1.08992 * 109.38800 * 61.36034 * 15 14 4 43 43 H 1.09002 * 109.61927 * 301.25313 * 15 14 4 44 44 H 1.08999 * 109.58729 * 185.71870 * 16 15 14 45 45 H 1.09004 * 109.58886 * 65.43758 * 16 15 14 46 46 H 0.97001 * 119.99914 * 180.02562 * 21 20 18 47 47 H 1.09004 * 109.59094 * 66.17180 * 26 17 16 48 48 H 1.09001 * 109.59077 * 186.46452 * 26 17 16 49 49 H 1.09002 * 109.49848 * 58.67960 * 27 14 4 50 50 H 1.09002 * 109.52425 * 298.59433 * 27 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1342 0.3017 1.3480 5 6 3.3582 1.5794 1.7140 6 8 3.7619 1.8287 2.8301 7 6 3.1069 2.6983 0.7362 8 6 3.4382 4.0376 1.3977 9 6 3.1825 5.1736 0.4052 10 6 3.5131 6.5129 1.0668 11 6 3.2619 7.6318 0.0891 12 7 3.4863 8.9095 0.4548 13 8 2.8586 7.3825 -1.0273 14 6 3.3789 -0.7860 2.2984 15 6 2.0760 -1.5516 2.5430 16 6 2.3287 -2.6686 3.5604 17 7 3.4415 -3.5020 3.0854 18 6 3.2972 -4.8589 2.9698 19 1 3.8869 -5.4053 2.2486 20 6 2.3928 -5.5321 3.7797 21 7 1.9481 -6.7190 3.4245 22 14 1.8068 -4.7537 5.3734 23 1 0.5508 -4.0017 5.1245 24 1 1.5566 -5.8159 6.3805 25 1 2.8475 -3.8244 5.8824 26 6 4.7124 -2.8522 2.7372 27 6 4.4342 -1.7352 1.7262 28 1 -1.0501 0.0002 -0.0001 29 1 3.0089 0.7576 -0.6953 30 1 3.0097 -0.9796 -0.3077 31 1 3.7375 2.5615 -0.1424 32 1 2.0591 2.6902 0.4362 33 1 2.8078 4.1746 2.2763 34 1 4.4861 4.0454 1.6974 35 1 3.8124 5.0368 -0.4738 36 1 2.1344 5.1656 0.1058 37 1 2.8828 6.6495 1.9456 38 1 4.5611 6.5212 1.3664 39 1 3.8092 9.1088 1.3475 40 1 3.3250 9.6296 -0.1747 41 1 3.7363 -0.3713 3.2409 42 1 1.7297 -1.9854 1.6050 43 1 1.3186 -0.8705 2.9310 44 1 1.4320 -3.2798 3.6623 45 1 2.5852 -2.2324 4.5259 46 1 1.3159 -7.1892 3.9903 47 1 5.1642 -2.4288 3.6343 48 1 5.3893 -3.5850 2.2980 49 1 5.3536 -1.1827 1.5323 50 1 4.0676 -2.1694 0.7961 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699785168.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:32 Heat of formation + Delta-G solvation = -35.948916 kcal Electronic energy + Delta-G solvation = -29039.403359 eV Core-core repulsion = 25067.223858 eV Total energy + Delta-G solvation = -3972.179502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.40290 -40.45575 -39.28973 -37.10888 -36.10917 -34.69844 -34.57904 -33.55022 -32.44733 -31.98353 -31.24000 -28.20614 -27.36936 -26.03162 -24.46584 -23.64906 -22.38757 -21.23543 -20.99255 -20.63478 -19.02280 -18.72941 -18.16293 -18.13552 -17.50575 -17.34348 -17.14083 -16.82341 -16.41198 -15.97896 -15.42914 -15.37605 -15.12321 -14.91434 -14.75203 -14.69490 -14.52611 -14.18719 -14.11953 -13.88334 -13.51739 -13.44904 -13.34427 -12.68900 -12.57612 -12.52607 -12.30846 -12.21963 -12.11167 -12.03413 -11.81683 -11.52406 -11.49750 -11.44659 -11.30374 -11.11582 -10.98637 -10.82920 -10.63609 -10.60608 -9.83125 -8.97890 -8.17874 -5.49226 1.26809 1.38504 1.44023 1.47332 1.65819 1.69863 1.92678 2.34146 2.39316 2.70658 3.03019 3.31569 3.49555 3.57418 3.81361 3.86034 3.96877 4.03882 4.05440 4.18015 4.23942 4.28925 4.36753 4.43022 4.45335 4.51790 4.64006 4.65193 4.71039 4.82127 4.83681 4.87299 4.87928 4.92260 5.02142 5.05596 5.10051 5.11443 5.14050 5.34857 5.40903 5.47392 5.52869 5.85807 5.94100 6.11876 6.37641 6.51317 6.70944 6.89078 7.14745 7.40263 7.60084 8.01442 9.01642 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.023129 B = 0.002196 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.333783 B =12747.713822 C =13022.439378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.231 4.231 3 C 0.212 3.788 4 N -0.601 5.601 5 C 0.512 3.488 6 O -0.579 6.579 7 C -0.135 4.135 8 C -0.096 4.096 9 C -0.099 4.099 10 C -0.139 4.139 11 C 0.511 3.489 12 N -0.842 5.842 13 O -0.598 6.598 14 C 0.152 3.848 15 C -0.121 4.121 16 C 0.126 3.874 17 N -0.617 5.617 18 C -0.243 4.243 19 H 0.060 0.940 20 C -0.032 4.032 21 N -0.953 5.953 22 Si 0.938 3.062 23 H -0.279 1.279 24 H -0.309 1.309 25 H -0.266 1.266 26 C 0.145 3.855 27 C -0.126 4.126 28 H 0.237 0.763 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.418 0.582 40 H 0.404 0.596 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.051 0.949 45 H 0.026 0.974 46 H 0.261 0.739 47 H 0.030 0.970 48 H 0.067 0.933 49 H 0.086 0.914 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.113 30.585 -7.614 31.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.232 4.232 3 C 0.090 3.910 4 N -0.332 5.332 5 C 0.303 3.697 6 O -0.459 6.459 7 C -0.174 4.174 8 C -0.134 4.134 9 C -0.137 4.137 10 C -0.179 4.179 11 C 0.297 3.703 12 N -0.406 5.406 13 O -0.479 6.479 14 C 0.049 3.951 15 C -0.161 4.161 16 C 0.000 4.000 17 N -0.342 5.342 18 C -0.373 4.373 19 H 0.077 0.923 20 C -0.227 4.227 21 N -0.599 5.599 22 Si 0.768 3.232 23 H -0.206 1.206 24 H -0.238 1.238 25 H -0.191 1.191 26 C 0.019 3.981 27 C -0.166 4.166 28 H 0.253 0.747 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.138 0.862 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.249 0.751 40 H 0.235 0.765 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.070 0.930 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.104 0.896 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.054 30.266 -7.626 31.361 hybrid contribution -0.840 -0.136 1.162 1.441 sum 2.214 30.130 -6.463 30.895 Atomic orbital electron populations 1.25656 0.96910 1.00114 0.97871 1.23890 0.95638 1.01385 1.02285 1.18701 0.83399 1.05252 0.83606 1.48192 1.64848 1.05998 1.14159 1.21447 0.75616 0.84001 0.88624 1.90668 1.47675 1.83829 1.23742 1.21786 1.05049 0.92107 0.98461 1.21272 1.02510 0.91754 0.97895 1.21261 1.02234 0.92254 0.97944 1.21706 1.05809 0.92041 0.98345 1.21195 0.75417 0.85620 0.88076 1.43825 1.69397 1.07325 1.20015 1.90738 1.48068 1.84869 1.24224 1.20836 0.94856 0.86453 0.92993 1.22149 0.97264 0.96690 1.00025 1.21289 0.91073 0.92295 0.95361 1.44500 1.09162 1.02579 1.77966 1.18883 1.21266 0.82862 1.14291 0.92267 1.25829 0.99786 0.96066 1.00975 1.69949 1.34169 1.16796 1.39007 0.86040 0.78500 0.76854 0.81801 1.20594 1.23778 1.19054 1.21083 0.86851 0.94052 0.96072 1.22207 0.98662 0.96222 0.99465 0.74672 0.84605 0.87390 0.86158 0.87993 0.92186 0.91262 0.91475 0.92162 0.86968 0.86590 0.75056 0.76527 0.90233 0.91763 0.92309 0.93084 0.95640 0.92989 0.95155 0.91440 0.89588 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.97 19.25 74.32 1.43 -2.54 16 2 C -0.23 -5.16 11.92 31.13 0.37 -4.79 16 3 C 0.21 4.07 5.16 84.57 0.44 4.50 16 4 N -0.60 -14.84 2.37 -808.09 -1.91 -16.75 16 5 C 0.51 12.70 7.67 87.66 0.67 13.38 16 6 O -0.58 -18.97 15.31 -3.03 -0.05 -19.01 16 7 C -0.13 -2.15 4.25 29.85 0.13 -2.02 16 8 C -0.10 -1.45 4.50 30.60 0.14 -1.32 16 9 C -0.10 -1.30 4.50 30.59 0.14 -1.16 16 10 C -0.14 -1.26 5.70 29.84 0.17 -1.09 16 11 C 0.51 6.91 8.10 87.66 0.71 7.62 16 12 N -0.84 -4.75 8.87 -173.53 -1.54 -6.29 16 13 O -0.60 -14.24 16.82 -3.06 -0.05 -14.29 16 14 C 0.15 4.73 2.48 45.03 0.11 4.84 16 15 C -0.12 -4.33 4.75 30.68 0.15 -4.18 16 16 C 0.13 5.51 4.20 86.36 0.36 5.87 16 17 N -0.62 -28.99 2.77 -699.09 -1.94 -30.93 16 18 C -0.24 -13.71 10.03 84.03 0.84 -12.87 16 19 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 20 C -0.03 -1.86 5.23 84.86 0.44 -1.41 16 21 N -0.95 -59.88 13.97 21.65 0.30 -59.58 16 22 Si 0.94 47.56 24.34 68.60 1.67 49.23 16 23 H -0.28 -13.52 6.62 99.48 0.66 -12.86 16 24 H -0.31 -15.83 7.11 99.48 0.71 -15.12 16 25 H -0.27 -13.11 6.64 99.48 0.66 -12.45 16 26 C 0.14 5.46 6.52 86.37 0.56 6.02 16 27 C -0.13 -3.75 5.31 30.67 0.16 -3.59 16 28 H 0.24 3.53 7.80 -4.41 -0.03 3.50 16 29 H 0.14 1.59 6.44 -2.39 -0.02 1.58 16 30 H 0.11 2.10 6.45 -2.39 -0.02 2.08 16 31 H 0.12 1.30 7.40 -2.38 -0.02 1.29 16 32 H 0.10 1.51 7.95 -2.39 -0.02 1.50 16 33 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.07 1.10 8.10 -2.39 -0.02 1.08 16 35 H 0.07 0.95 8.10 -2.39 -0.02 0.93 16 36 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.42 -0.39 8.83 -92.71 -0.82 -1.21 16 40 H 0.40 1.97 8.93 -92.71 -0.83 1.15 16 41 H 0.08 2.82 6.90 -2.39 -0.02 2.81 16 42 H 0.06 2.35 7.01 -2.39 -0.02 2.33 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 2.47 4.50 -2.39 -0.01 2.46 16 45 H 0.03 1.13 7.07 -2.38 -0.02 1.11 16 46 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 47 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 49 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 50 H 0.07 2.06 6.72 -2.39 -0.02 2.04 16 Total: -1.00 -81.30 397.81 2.52 -78.78 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -0.79 Total: 11.57 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 6.83 Total: 7.27 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -5.09 Total: -113.55 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.10 Total: -33.30 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 1.67 Total: 49.23 kcal Total: -81.30 2.52 -78.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699785168.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.826 kcal (2) G-P(sol) polarization free energy of solvation -81.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds