Wall clock time and date at job start Tue Mar 31 2020 18:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46891 * 109.47287 * 41.85842 * 3 2 1 5 5 C 1.46847 * 111.00182 * 189.99591 * 4 3 2 6 6 C 1.53038 * 109.52519 * 185.83873 * 5 4 3 7 7 C 1.53117 * 109.28204 * 300.82311 * 6 5 4 8 8 C 1.50693 * 109.52646 * 177.55872 * 7 6 5 9 9 O 1.21281 * 119.99948 * 337.61171 * 8 7 6 10 10 N 1.34777 * 120.00145 * 157.61166 * 8 7 6 11 11 C 1.47151 * 120.98032 * 355.37331 * 10 8 7 12 12 C 1.53299 * 108.38439 * 230.55587 * 11 10 8 13 13 O 1.42962 * 109.22405 * 307.70442 * 12 11 10 14 14 C 1.42957 * 114.16952 * 62.57584 * 13 12 11 15 15 H 1.09003 * 109.50950 * 57.39440 * 14 13 12 16 16 C 1.53004 * 109.51348 * 177.49567 * 14 13 12 17 17 N 1.46499 * 109.47118 * 300.00106 * 16 14 13 18 18 C 1.36938 * 119.99951 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99907 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00059 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47115 * 89.99451 * 22 20 18 24 24 H 1.48497 * 109.47272 * 209.99638 * 22 20 18 25 25 H 1.48500 * 109.47091 * 329.99622 * 22 20 18 26 26 C 1.47157 * 120.98006 * 175.40171 * 10 8 7 27 27 C 1.53123 * 109.15664 * 57.65147 * 7 6 5 28 28 C 1.46842 * 111.00119 * 314.20874 * 4 3 2 29 29 H 4.40883 * 5.52257 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46990 * 281.85479 * 3 2 1 31 31 H 1.09006 * 109.46911 * 161.86285 * 3 2 1 32 32 H 1.09005 * 109.46176 * 65.82618 * 5 4 3 33 33 H 1.08998 * 109.46530 * 305.86286 * 5 4 3 34 34 H 1.09006 * 109.50240 * 180.88095 * 6 5 4 35 35 H 1.08999 * 109.53157 * 60.78752 * 6 5 4 36 36 H 1.08999 * 109.52266 * 297.68598 * 7 6 5 37 37 H 1.08996 * 109.67719 * 110.83625 * 11 10 8 38 38 H 1.08998 * 109.71183 * 350.29893 * 11 10 8 39 39 H 1.08995 * 109.51151 * 187.77624 * 12 11 10 40 40 H 1.08999 * 109.55062 * 67.64797 * 12 11 10 41 41 H 1.09001 * 109.47115 * 60.00339 * 16 14 13 42 42 H 1.09001 * 109.47265 * 179.97438 * 16 14 13 43 43 H 0.96997 * 119.99788 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99795 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.68116 * 9.71444 * 26 10 8 46 46 H 1.09004 * 109.67273 * 249.16433 * 26 10 8 47 47 H 1.08996 * 109.50046 * 62.29298 * 27 7 6 48 48 H 1.09007 * 109.49941 * 182.40600 * 27 7 6 49 49 H 1.09000 * 109.46674 * 294.17484 * 28 4 3 50 50 H 1.08999 * 109.46210 * 54.14409 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -1.0306 -0.9241 5 6 4.5845 -1.2231 -0.7777 6 6 5.0825 -2.1942 -1.8505 7 6 4.3531 -3.5320 -1.6994 8 6 4.7956 -4.4729 -2.7901 9 8 5.2710 -4.0323 -3.8152 10 7 4.6630 -5.8041 -2.6266 11 6 4.1836 -6.3669 -1.3543 12 6 5.1591 -7.4641 -0.9129 13 8 5.3441 -8.3894 -1.9869 14 6 5.9298 -7.8167 -3.1585 15 1 6.8909 -7.3699 -2.9038 16 6 6.1361 -8.9070 -4.2119 17 7 7.0259 -9.9407 -3.6770 18 6 7.3563 -11.0245 -4.4460 19 1 6.9605 -11.1176 -5.4466 20 6 8.1989 -12.0042 -3.9390 21 7 8.6808 -11.8911 -2.7194 22 14 8.6502 -13.4824 -4.9882 23 1 9.8777 -13.1802 -5.7673 24 1 8.8966 -14.6551 -4.1112 25 1 7.5349 -13.7869 -5.9201 26 6 4.9939 -6.7377 -3.7149 27 6 2.8440 -3.2965 -1.8076 28 6 2.4109 -2.2935 -0.7360 29 1 -1.0499 -0.0001 -0.0004 30 1 3.0093 -0.2103 1.0057 31 1 3.0088 0.9775 -0.3199 32 1 4.7985 -1.6320 0.2098 33 1 5.0916 -0.2650 -0.8914 34 1 6.1549 -2.3489 -1.7317 35 1 4.8819 -1.7798 -2.8385 36 1 4.5862 -3.9661 -0.7271 37 1 3.1900 -6.7931 -1.4926 38 1 4.1450 -5.5838 -0.5972 39 1 4.7515 -7.9871 -0.0478 40 1 6.1171 -7.0159 -0.6494 41 1 5.1744 -9.3520 -4.4673 42 1 6.5823 -8.4696 -5.1050 43 1 7.3804 -9.8576 -2.7780 44 1 9.2700 -12.5755 -2.3653 45 1 5.4922 -6.1996 -4.5213 46 1 4.0818 -7.2012 -4.0909 47 1 2.6076 -2.8993 -2.7947 48 1 2.3170 -4.2390 -1.6582 49 1 2.6350 -2.6975 0.2513 50 1 1.3392 -2.1128 -0.8195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700167672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:32 Heat of formation + Delta-G solvation = 1.876602 kcal Electronic energy + Delta-G solvation = -29224.425735 eV Core-core repulsion = 25253.886472 eV Total energy + Delta-G solvation = -3970.539264 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81740 -39.33079 -38.16483 -35.16453 -34.88957 -34.37757 -32.68321 -32.09041 -31.19095 -30.18539 -28.47249 -27.59794 -25.71376 -23.93915 -23.63477 -23.46897 -22.31760 -20.94234 -20.33704 -19.08656 -18.54715 -17.54279 -17.04799 -16.77242 -16.31410 -15.80717 -15.73253 -15.45313 -15.21706 -15.00330 -14.58291 -14.43243 -14.18075 -14.05850 -13.80996 -13.43685 -13.30462 -13.14504 -12.94070 -12.71922 -12.52842 -12.38314 -12.15269 -11.80356 -11.61786 -11.51981 -11.08185 -11.02119 -10.98107 -10.88226 -10.77693 -10.76842 -10.58114 -10.43027 -10.06334 -9.88353 -9.75719 -9.61801 -8.84850 -8.80565 -8.53780 -6.87189 -5.71189 -2.99766 2.24262 2.40407 2.48608 2.75720 3.47126 3.51850 3.53831 3.55652 3.88347 3.93448 4.13153 4.37622 4.41800 4.59210 4.64955 4.72820 4.77334 4.80744 4.90351 4.96127 5.02200 5.06538 5.12625 5.13978 5.19685 5.29720 5.31492 5.39978 5.43027 5.49706 5.57064 5.61506 5.64323 5.66489 5.69906 5.81119 5.88896 5.96685 6.02811 6.28531 6.32722 6.50817 6.57491 6.58567 6.70947 7.16401 7.24579 7.46193 7.73584 8.04236 8.46999 9.58740 10.16070 10.52205 11.51606 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.001956 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.630537 B =14311.803480 C =14478.439976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.185 4.185 3 C 0.162 3.838 4 N -0.535 5.535 5 C 0.057 3.943 6 C -0.099 4.099 7 C -0.109 4.109 8 C 0.521 3.479 9 O -0.536 6.536 10 N -0.613 5.613 11 C 0.070 3.930 12 C 0.045 3.955 13 O -0.356 6.356 14 C 0.074 3.926 15 H 0.062 0.938 16 C 0.163 3.837 17 N -0.726 5.726 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.085 3.915 27 C -0.104 4.104 28 C 0.056 3.944 29 H 0.218 0.782 30 H 0.058 0.942 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.036 0.964 43 H 0.388 0.612 44 H 0.254 0.746 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.036 0.964 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.127 24.977 9.611 30.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.036 3.964 4 N -0.260 5.260 5 C -0.070 4.070 6 C -0.137 4.137 7 C -0.130 4.130 8 C 0.309 3.691 9 O -0.413 6.413 10 N -0.347 5.347 11 C -0.053 4.053 12 C -0.033 4.033 13 O -0.274 6.274 14 C 0.015 3.985 15 H 0.080 0.920 16 C 0.035 3.965 17 N -0.370 5.370 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.038 4.038 27 C -0.142 4.142 28 C -0.071 4.071 29 H 0.235 0.765 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.222 0.778 44 H 0.064 0.936 45 H 0.120 0.880 46 H 0.095 0.905 47 H 0.098 0.902 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.973 25.055 8.451 30.387 hybrid contribution 0.348 -0.912 0.735 1.222 sum -14.624 24.143 9.186 29.684 Atomic orbital electron populations 1.24952 0.95957 1.00033 1.00307 1.22793 0.94243 1.00828 1.00710 1.19083 0.84814 0.97198 0.95326 1.62049 1.04329 1.07911 1.51750 1.22140 0.86994 1.00203 0.97692 1.21448 0.99238 0.92403 1.00610 1.21425 0.97534 0.95874 0.98157 1.20562 0.77855 0.82095 0.88544 1.90698 1.44352 1.76334 1.29902 1.48190 1.66046 1.05724 1.14763 1.22567 0.99119 0.97747 0.85837 1.22914 0.97998 0.91146 0.91231 1.88169 1.82278 1.34209 1.22729 1.22789 0.94544 0.94082 0.87058 0.91960 1.20629 0.94771 0.88616 0.92487 1.42207 1.55459 1.22188 1.17153 1.19235 1.22948 0.98122 0.96699 0.91139 1.24743 1.00526 0.99082 0.96676 1.69680 1.37252 1.35698 1.15432 0.86172 0.78241 0.82520 0.79149 1.21761 1.21802 1.20768 1.22343 1.00374 0.90793 0.90308 1.21530 0.92813 0.99004 1.00844 1.22142 0.99108 0.88854 0.97033 0.76509 0.92373 0.88201 0.94408 0.89864 0.90746 0.89490 0.89173 0.90347 0.89110 0.87797 0.92891 0.95394 0.94681 0.77841 0.93594 0.88042 0.90461 0.90166 0.90798 0.94535 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 19.02 29.55 0.56 -0.70 16 2 C -0.19 -1.38 11.51 -37.12 -0.43 -1.81 16 3 C 0.16 1.02 5.77 -6.62 -0.04 0.98 16 4 N -0.54 -4.02 4.79 -238.19 -1.14 -5.16 16 5 C 0.06 0.38 5.42 -3.83 -0.02 0.36 16 6 C -0.10 -0.87 4.92 -26.65 -0.13 -1.00 16 7 C -0.11 -0.98 1.82 -91.65 -0.17 -1.14 16 8 C 0.52 6.66 6.85 -10.99 -0.08 6.58 16 9 O -0.54 -8.84 15.48 5.56 0.09 -8.76 16 10 N -0.61 -7.67 3.02 -172.28 -0.52 -8.19 16 11 C 0.07 0.69 6.28 -3.53 -0.02 0.67 16 12 C 0.05 0.55 6.99 37.31 0.26 0.81 16 13 O -0.36 -6.22 10.13 -35.23 -0.36 -6.57 16 14 C 0.07 1.28 2.87 -26.58 -0.08 1.20 16 15 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 16 C 0.16 3.40 5.96 -4.04 -0.02 3.37 16 17 N -0.73 -19.12 5.50 -59.91 -0.33 -19.45 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 20 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 21 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 22 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.08 1.23 5.94 -3.53 -0.02 1.21 16 27 C -0.10 -0.84 5.36 -26.65 -0.14 -0.98 16 28 C 0.06 0.41 5.08 -3.84 -0.02 0.39 16 29 H 0.22 0.73 7.80 -54.09 -0.42 0.31 16 30 H 0.06 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 0.94 7.80 -51.93 -0.41 0.54 16 36 H 0.09 0.67 6.18 -51.93 -0.32 0.35 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.63 5.52 -51.93 -0.29 0.34 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.39 10.85 7.54 -40.82 -0.31 10.54 16 44 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 45 H 0.10 1.56 7.06 -51.93 -0.37 1.19 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.53 7.91 -51.93 -0.41 0.12 16 49 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 50 H 0.08 0.64 6.36 -51.93 -0.33 0.31 16 LS Contribution 398.32 15.07 6.00 6.00 Total: -1.00 -35.14 398.32 -9.46 -44.60 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -8.31 Total: 5.42 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -0.59 Total: 2.41 kcal Atomic # 7 Polarization: -59.62 SS G_CDS: -1.27 Total: -60.89 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.27 Total: -15.33 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.14 -9.46 -44.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700167672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.476 kcal (2) G-P(sol) polarization free energy of solvation -35.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds