Wall clock time and date at job start Tue Mar 31 2020 18:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46891 * 109.47287 * 41.85842 * 3 2 1 5 5 C 1.46847 * 111.00182 * 189.99591 * 4 3 2 6 6 C 1.53038 * 109.52519 * 185.83873 * 5 4 3 7 7 C 1.53117 * 109.28204 * 300.82311 * 6 5 4 8 8 C 1.50693 * 109.52646 * 177.55872 * 7 6 5 9 9 O 1.21281 * 119.99948 * 337.61171 * 8 7 6 10 10 N 1.34777 * 120.00145 * 157.61166 * 8 7 6 11 11 C 1.47151 * 120.98032 * 355.37331 * 10 8 7 12 12 C 1.53299 * 108.38439 * 230.55587 * 11 10 8 13 13 O 1.42962 * 109.22405 * 307.70442 * 12 11 10 14 14 C 1.42957 * 114.16952 * 62.57584 * 13 12 11 15 15 H 1.09003 * 109.50950 * 57.39440 * 14 13 12 16 16 C 1.53004 * 109.51348 * 177.49567 * 14 13 12 17 17 N 1.46499 * 109.47118 * 300.00106 * 16 14 13 18 18 C 1.36938 * 119.99951 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99907 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99907 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00059 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47115 * 89.99451 * 22 20 18 24 24 H 1.48497 * 109.47272 * 209.99638 * 22 20 18 25 25 H 1.48500 * 109.47091 * 329.99622 * 22 20 18 26 26 C 1.47157 * 120.98006 * 175.40171 * 10 8 7 27 27 C 1.53123 * 109.15664 * 57.65147 * 7 6 5 28 28 C 1.46842 * 111.00119 * 314.20874 * 4 3 2 29 29 H 4.40883 * 5.52257 * 180.02562 * 4 1 2 30 30 H 1.08998 * 109.46990 * 281.85479 * 3 2 1 31 31 H 1.09006 * 109.46911 * 161.86285 * 3 2 1 32 32 H 1.09005 * 109.46176 * 65.82618 * 5 4 3 33 33 H 1.08998 * 109.46530 * 305.86286 * 5 4 3 34 34 H 1.09006 * 109.50240 * 180.88095 * 6 5 4 35 35 H 1.08999 * 109.53157 * 60.78752 * 6 5 4 36 36 H 1.08999 * 109.52266 * 297.68598 * 7 6 5 37 37 H 1.08996 * 109.67719 * 110.83625 * 11 10 8 38 38 H 1.08998 * 109.71183 * 350.29893 * 11 10 8 39 39 H 1.08995 * 109.51151 * 187.77624 * 12 11 10 40 40 H 1.08999 * 109.55062 * 67.64797 * 12 11 10 41 41 H 1.09001 * 109.47115 * 60.00339 * 16 14 13 42 42 H 1.09001 * 109.47265 * 179.97438 * 16 14 13 43 43 H 0.96997 * 119.99788 * 0.02562 * 17 16 14 44 44 H 0.96999 * 119.99795 * 180.02562 * 21 20 18 45 45 H 1.08998 * 109.68116 * 9.71444 * 26 10 8 46 46 H 1.09004 * 109.67273 * 249.16433 * 26 10 8 47 47 H 1.08996 * 109.50046 * 62.29298 * 27 7 6 48 48 H 1.09007 * 109.49941 * 182.40600 * 27 7 6 49 49 H 1.09000 * 109.46674 * 294.17484 * 28 4 3 50 50 H 1.08999 * 109.46210 * 54.14409 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -1.0306 -0.9241 5 6 4.5845 -1.2231 -0.7777 6 6 5.0825 -2.1942 -1.8505 7 6 4.3531 -3.5320 -1.6994 8 6 4.7956 -4.4729 -2.7901 9 8 5.2710 -4.0323 -3.8152 10 7 4.6630 -5.8041 -2.6266 11 6 4.1836 -6.3669 -1.3543 12 6 5.1591 -7.4641 -0.9129 13 8 5.3441 -8.3894 -1.9869 14 6 5.9298 -7.8167 -3.1585 15 1 6.8909 -7.3699 -2.9038 16 6 6.1361 -8.9070 -4.2119 17 7 7.0259 -9.9407 -3.6770 18 6 7.3563 -11.0245 -4.4460 19 1 6.9605 -11.1176 -5.4466 20 6 8.1989 -12.0042 -3.9390 21 7 8.6808 -11.8911 -2.7194 22 14 8.6502 -13.4824 -4.9882 23 1 9.8777 -13.1802 -5.7673 24 1 8.8966 -14.6551 -4.1112 25 1 7.5349 -13.7869 -5.9201 26 6 4.9939 -6.7377 -3.7149 27 6 2.8440 -3.2965 -1.8076 28 6 2.4109 -2.2935 -0.7360 29 1 -1.0499 -0.0001 -0.0004 30 1 3.0093 -0.2103 1.0057 31 1 3.0088 0.9775 -0.3199 32 1 4.7985 -1.6320 0.2098 33 1 5.0916 -0.2650 -0.8914 34 1 6.1549 -2.3489 -1.7317 35 1 4.8819 -1.7798 -2.8385 36 1 4.5862 -3.9661 -0.7271 37 1 3.1900 -6.7931 -1.4926 38 1 4.1450 -5.5838 -0.5972 39 1 4.7515 -7.9871 -0.0478 40 1 6.1171 -7.0159 -0.6494 41 1 5.1744 -9.3520 -4.4673 42 1 6.5823 -8.4696 -5.1050 43 1 7.3804 -9.8576 -2.7780 44 1 9.2700 -12.5755 -2.3653 45 1 5.4922 -6.1996 -4.5213 46 1 4.0818 -7.2012 -4.0909 47 1 2.6076 -2.8993 -2.7947 48 1 2.3170 -4.2390 -1.6582 49 1 2.6350 -2.6975 0.2513 50 1 1.3392 -2.1128 -0.8195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700167672.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:31 Heat of formation + Delta-G solvation = -23.351856 kcal Electronic energy + Delta-G solvation = -29225.519724 eV Core-core repulsion = 25253.886472 eV Total energy + Delta-G solvation = -3971.633252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.77177 -40.18788 -39.17417 -36.68429 -35.82506 -35.54738 -33.94689 -33.12547 -31.84761 -31.78349 -29.46372 -28.53584 -27.10188 -25.15326 -24.61979 -24.18608 -23.70663 -22.30725 -21.09913 -19.99820 -19.24466 -18.98079 -18.39896 -17.80112 -17.27711 -16.92263 -16.68613 -16.40541 -16.13774 -15.94077 -15.76880 -15.72494 -15.26593 -15.03134 -14.80877 -14.68641 -14.34696 -14.17905 -13.98247 -13.94223 -13.67680 -13.37621 -13.03700 -12.99647 -12.79881 -12.64154 -12.51083 -12.28567 -12.15698 -12.05629 -11.89781 -11.74033 -11.63776 -11.54248 -11.29635 -11.17797 -11.05721 -10.96128 -10.70036 -9.64077 -9.28335 -9.01419 -7.94404 -5.24063 1.47351 1.49431 1.50022 1.58463 1.76119 1.76972 1.93162 2.56205 2.74452 3.06416 3.32030 3.39188 3.46936 3.55473 3.71849 3.75727 3.86902 3.93714 4.01215 4.06303 4.19065 4.20688 4.29343 4.36880 4.37702 4.46716 4.49944 4.51862 4.58651 4.65431 4.68138 4.71934 4.74210 4.84826 4.86751 4.91813 4.94137 5.03908 5.07514 5.12857 5.14794 5.24814 5.35379 5.47851 6.02017 6.08884 6.22326 6.26435 6.29177 6.70679 7.04169 7.33154 8.06849 8.32121 9.29229 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.033500 B = 0.001956 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.630537 B =14311.803480 C =14478.439976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.552 5.552 5 C 0.063 3.937 6 C -0.097 4.097 7 C -0.099 4.099 8 C 0.517 3.483 9 O -0.581 6.581 10 N -0.614 5.614 11 C 0.075 3.925 12 C 0.036 3.964 13 O -0.387 6.387 14 C 0.089 3.911 15 H 0.046 0.954 16 C 0.160 3.840 17 N -0.739 5.739 18 C -0.249 4.249 19 H 0.078 0.922 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.978 3.022 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.269 1.269 26 C 0.094 3.906 27 C -0.097 4.097 28 C 0.061 3.939 29 H 0.241 0.759 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.117 0.883 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.050 0.950 41 H 0.030 0.970 42 H 0.041 0.959 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.056 0.944 48 H 0.088 0.912 49 H 0.051 0.949 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 25.654 10.871 32.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.215 4.215 3 C 0.036 3.964 4 N -0.278 5.278 5 C -0.064 4.064 6 C -0.136 4.136 7 C -0.120 4.120 8 C 0.308 3.692 9 O -0.460 6.460 10 N -0.347 5.347 11 C -0.047 4.047 12 C -0.041 4.041 13 O -0.306 6.306 14 C 0.030 3.970 15 H 0.064 0.936 16 C 0.032 3.968 17 N -0.382 5.382 18 C -0.380 4.380 19 H 0.096 0.904 20 C -0.269 4.269 21 N -0.619 5.619 22 Si 0.807 3.193 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.194 1.194 26 C -0.030 4.030 27 C -0.136 4.136 28 C -0.066 4.066 29 H 0.257 0.743 30 H 0.090 0.910 31 H 0.124 0.876 32 H 0.073 0.927 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.059 0.941 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.106 0.894 49 H 0.070 0.930 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.546 25.759 9.711 32.118 hybrid contribution 0.768 -1.058 0.350 1.353 sum -15.778 24.701 10.061 30.989 Atomic orbital electron populations 1.25673 0.96855 0.99168 0.99518 1.23260 0.95076 1.01684 1.01519 1.19143 0.84396 0.97098 0.95754 1.62007 1.04677 1.08334 1.52769 1.22089 0.86698 1.00159 0.97431 1.21406 0.99212 0.92873 1.00093 1.21460 0.98059 0.94931 0.97596 1.21293 0.76805 0.82324 0.88817 1.90679 1.46357 1.77049 1.31952 1.48296 1.65688 1.05512 1.15186 1.22744 0.98731 0.97965 0.85233 1.23247 0.98859 0.91521 0.90461 1.88105 1.82275 1.36532 1.23661 1.22427 0.94673 0.93176 0.86701 0.93594 1.20773 0.93642 0.88489 0.93847 1.42388 1.56307 1.22955 1.16550 1.19674 1.22443 0.98754 0.97153 0.90439 1.25626 1.01003 1.02207 0.98057 1.69844 1.38224 1.36649 1.17227 0.85076 0.78153 0.78599 0.77519 1.21327 1.22036 1.19357 1.22057 0.99919 0.90310 0.90672 1.21489 0.92058 0.99932 1.00080 1.22080 0.98818 0.88561 0.97161 0.74263 0.91020 0.87580 0.92716 0.88901 0.91074 0.92212 0.86513 0.88848 0.85445 0.85414 0.93171 0.95159 0.94126 0.79266 0.93996 0.89273 0.89564 0.92516 0.89395 0.93036 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.17 19.02 74.32 1.41 -0.76 16 2 C -0.22 -2.84 11.51 31.13 0.36 -2.49 16 3 C 0.16 1.71 5.77 84.50 0.49 2.20 16 4 N -0.55 -7.23 4.79 -907.49 -4.35 -11.58 16 5 C 0.06 0.72 5.42 86.33 0.47 1.18 16 6 C -0.10 -1.63 4.92 30.65 0.15 -1.48 16 7 C -0.10 -1.59 1.82 -11.46 -0.02 -1.61 16 8 C 0.52 12.81 6.85 87.65 0.60 13.41 16 9 O -0.58 -19.57 15.48 -3.03 -0.05 -19.61 16 10 N -0.61 -14.52 3.02 -817.36 -2.47 -16.99 16 11 C 0.07 1.24 6.28 86.36 0.54 1.79 16 12 C 0.04 0.82 6.99 72.08 0.50 1.32 16 13 O -0.39 -13.36 10.13 -148.98 -1.51 -14.86 16 14 C 0.09 3.11 2.87 30.69 0.09 3.20 16 15 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 16 C 0.16 6.74 5.96 86.38 0.51 7.25 16 17 N -0.74 -39.70 5.50 -343.45 -1.89 -41.58 16 18 C -0.25 -14.41 9.99 84.03 0.84 -13.57 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 21 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 22 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 C 0.09 2.72 5.94 86.35 0.51 3.23 16 27 C -0.10 -1.38 5.36 30.65 0.16 -1.22 16 28 C 0.06 0.74 5.08 86.33 0.44 1.18 16 29 H 0.24 1.08 7.80 -4.42 -0.03 1.04 16 30 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 31 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.09 0.87 8.12 -2.39 -0.02 0.85 16 34 H 0.07 1.21 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.33 7.80 -2.39 -0.02 1.31 16 36 H 0.12 1.26 6.18 -2.39 -0.01 1.25 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.13 1.19 5.52 -2.39 -0.01 1.17 16 39 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.04 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.38 21.63 7.54 -92.71 -0.70 20.93 16 44 H 0.25 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.09 2.80 7.06 -2.39 -0.02 2.78 16 46 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 48 H 0.09 1.00 7.91 -2.38 -0.02 0.98 16 49 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.08 1.05 6.36 -2.39 -0.02 1.03 16 Total: -1.00 -77.78 398.32 -0.20 -77.98 By element: Atomic # 1 Polarization: 28.31 SS G_CDS: 0.22 Total: 28.54 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.53 Total: 9.57 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -8.42 Total: -130.76 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -1.56 Total: -34.48 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.78 -0.20 -77.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700167672.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.623 kcal (2) G-P(sol) polarization free energy of solvation -77.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds