Wall clock time and date at job start Tue Mar 31 2020 19:08:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47040 * 2 1
4 4 N 1.46504 * 109.46984 * 180.02562 * 3 2 1
5 5 C 1.46505 * 119.99504 * 269.99818 * 4 3 2
6 6 C 1.39043 * 120.00042 * 89.99957 * 4 3 2
7 7 C 1.39225 * 119.92961 * 180.02562 * 6 4 3
8 8 C 1.37598 * 120.06836 * 180.02562 * 7 6 4
9 9 C 1.39798 * 119.93393 * 359.97438 * 8 7 6
10 10 C 1.47518 * 120.07239 * 180.02562 * 9 8 7
11 11 O 1.21602 * 119.99856 * 359.97438 * 10 9 8
12 12 N 1.34776 * 120.00063 * 180.02562 * 10 9 8
13 13 C 1.46501 * 119.99681 * 179.97438 * 12 10 9
14 14 C 1.53005 * 109.47085 * 180.02562 * 13 12 10
15 15 H 1.09001 * 109.46812 * 64.99732 * 14 13 12
16 16 C 1.52997 * 109.47452 * 184.99949 * 14 13 12
17 17 O 1.42906 * 109.47007 * 54.99567 * 16 14 13
18 18 N 1.46506 * 109.46831 * 305.00177 * 14 13 12
19 19 C 1.36936 * 119.99838 * 154.99889 * 18 14 13
20 20 H 1.07999 * 120.00085 * 0.02562 * 19 18 14
21 21 C 1.38815 * 119.99824 * 179.97438 * 19 18 14
22 22 N 1.31616 * 119.99954 * 0.02562 * 21 19 18
23 23 Si 1.86794 * 119.99939 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47040 * 60.00288 * 23 21 19
25 25 H 1.48506 * 109.47344 * 180.02562 * 23 21 19
26 26 H 1.48503 * 109.47287 * 300.00283 * 23 21 19
27 27 C 1.39794 * 119.86171 * 0.27636 * 9 8 7
28 28 C 1.37615 * 119.92751 * 359.46198 * 27 9 8
29 29 H 1.09004 * 109.47283 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47481 * 299.99935 * 1 2 3
31 31 H 1.09001 * 109.47078 * 60.00171 * 1 2 3
32 32 H 1.09000 * 109.47120 * 239.99662 * 2 1 3
33 33 H 1.09003 * 109.46690 * 120.00180 * 2 1 3
34 34 H 1.08994 * 109.46857 * 60.00175 * 3 2 1
35 35 H 1.09001 * 109.47045 * 299.99849 * 3 2 1
36 36 H 1.08993 * 109.47119 * 269.99853 * 5 4 3
37 37 H 1.08994 * 109.47205 * 30.00524 * 5 4 3
38 38 H 1.09001 * 109.46862 * 149.99982 * 5 4 3
39 39 H 1.07999 * 119.96259 * 0.02562 * 7 6 4
40 40 H 1.08006 * 120.03466 * 179.97438 * 8 7 6
41 41 H 0.96998 * 120.00301 * 359.97438 * 12 10 9
42 42 H 1.09000 * 109.47818 * 59.99929 * 13 12 10
43 43 H 1.09001 * 109.47363 * 299.99334 * 13 12 10
44 44 H 1.08998 * 109.47192 * 174.99730 * 16 14 13
45 45 H 1.09000 * 109.46875 * 295.00133 * 16 14 13
46 46 H 0.96700 * 113.99791 * 179.97438 * 17 16 14
47 47 H 0.97000 * 119.99812 * 334.99233 * 18 14 13
48 48 H 0.97000 * 120.00432 * 179.97438 * 22 21 19
49 49 H 1.08003 * 120.03887 * 179.73010 * 27 9 8
50 50 H 1.07994 * 119.96469 * 180.25174 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.2380 1.4423 1.2679
6 6 4.1997 1.4426 -1.2051
7 6 5.5920 1.4421 -1.2039
8 6 6.2824 1.4428 -2.3942
9 6 5.5844 1.4435 -3.6054
10 6 6.3215 1.4437 -4.8833
11 8 7.5375 1.4437 -4.8838
12 7 5.6471 1.4449 -6.0502
13 6 6.3792 1.4456 -7.3192
14 6 5.3845 1.4476 -8.4818
15 1 4.8190 2.3794 -8.4745
16 6 6.1447 1.3227 -9.8037
17 8 6.9762 0.1610 -9.7671
18 7 4.4642 0.3167 -8.3389
19 6 3.2199 0.3705 -8.9082
20 1 2.9172 1.2463 -9.4629
21 6 2.3481 -0.7013 -8.7733
22 7 2.7172 -1.7689 -8.0978
23 14 0.6505 -0.6277 -9.5493
24 1 0.7847 -0.4573 -11.0183
25 1 -0.0804 -1.8880 -9.2615
26 1 -0.1026 0.5208 -8.9844
27 6 4.1865 1.4494 -3.6033
28 6 3.5017 1.4432 -2.4096
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6766 1.9562 0.8900
35 1 1.6766 1.9563 -0.8900
36 1 4.4198 2.4699 1.5826
37 1 3.6492 0.9284 2.0276
38 1 5.1903 0.9285 1.1371
39 1 6.1306 1.4411 -0.2678
40 1 7.3624 1.4428 -2.3927
41 1 4.6771 1.4453 -6.0499
42 1 7.0055 0.5555 -7.3780
43 1 7.0061 2.3355 -7.3765
44 1 5.4335 1.2347 -10.6249
45 1 6.7634 2.2077 -9.9520
46 1 7.4885 0.0184 -10.5747
47 1 4.7362 -0.4701 -7.8412
48 1 2.1079 -2.5177 -8.0031
49 1 3.6444 1.4543 -4.5374
50 1 2.4218 1.4436 -2.4072
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001700808942.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:27
Heat of formation + Delta-G solvation = -44.165803 kcal
Electronic energy + Delta-G solvation = -28916.716130 eV
Core-core repulsion = 24944.180318 eV
Total energy + Delta-G solvation = -3972.535812 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-40.04718 -38.87406 -37.12249 -36.43958 -34.81220 -33.69295 -33.37269 -31.45211
-30.93796 -29.99419 -28.19217 -27.74481 -25.83463 -24.64228 -23.59281 -22.43760
-22.15483 -21.11708 -20.01477 -19.62860 -18.08012 -17.46863 -16.72524 -16.53874
-16.20729 -15.49148 -15.11095 -14.98984 -14.90425 -14.63090 -14.37125 -14.00763
-13.88006 -13.51584 -13.46269 -13.33154 -13.24162 -12.98301 -12.80478 -12.53253
-12.34578 -12.28464 -12.04327 -11.96160 -11.84481 -11.57925 -11.34877 -10.98889
-10.85775 -10.82232 -10.70654 -10.51314 -10.10542 -9.84193 -9.75924 -9.46219
-9.29862 -8.95170 -8.89764 -8.45236 -7.35741 -7.00952 -5.78682 -3.09118
1.25136 1.55643 2.89188 3.28365 3.39912 3.45122 3.46394 3.78251
4.19705 4.54449 4.56334 4.66940 4.74751 4.95724 4.97321 4.98533
5.05915 5.15310 5.19347 5.25803 5.34192 5.41009 5.46029 5.50212
5.51104 5.57810 5.59487 5.63694 5.68224 5.77431 5.88040 5.95526
6.02458 6.07799 6.11310 6.12909 6.23576 6.37918 6.48157 6.56629
6.64536 6.80472 6.81954 7.06535 7.08674 7.36785 7.63966 8.13104
8.25315 8.38075 8.77802 9.50161 10.06280 10.43187 11.42630
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009217 B = 0.003279 C = 0.002500
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3037.128326 B = 8538.195510 C =11197.375814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.146 4.146
3 C 0.120 3.880
4 N -0.629 5.629
5 C 0.091 3.909
6 C 0.236 3.764
7 C -0.213 4.213
8 C -0.012 4.012
9 C -0.190 4.190
10 C 0.559 3.441
11 O -0.561 6.561
12 N -0.711 5.711
13 C 0.120 3.880
14 C 0.165 3.835
15 H 0.065 0.935
16 C 0.060 3.940
17 O -0.560 6.560
18 N -0.713 5.713
19 C -0.249 4.249
20 H 0.069 0.931
21 C -0.007 4.007
22 N -0.925 5.925
23 Si 0.905 3.095
24 H -0.287 1.287
25 H -0.291 1.291
26 H -0.286 1.286
27 C -0.029 4.029
28 C -0.205 4.205
29 H 0.057 0.943
30 H 0.053 0.947
31 H 0.058 0.942
32 H 0.070 0.930
33 H 0.061 0.939
34 H 0.073 0.927
35 H 0.079 0.921
36 H 0.048 0.952
37 H 0.065 0.935
38 H 0.070 0.930
39 H 0.125 0.875
40 H 0.132 0.868
41 H 0.407 0.593
42 H 0.075 0.925
43 H 0.060 0.940
44 H 0.048 0.952
45 H 0.026 0.974
46 H 0.363 0.637
47 H 0.389 0.611
48 H 0.256 0.744
49 H 0.131 0.869
50 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.614 8.306 16.634 18.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.185 4.185
3 C -0.003 4.003
4 N -0.338 5.338
5 C -0.052 4.052
6 C 0.133 3.867
7 C -0.235 4.235
8 C -0.032 4.032
9 C -0.195 4.195
10 C 0.347 3.653
11 O -0.442 6.442
12 N -0.362 5.362
13 C -0.005 4.005
14 C 0.054 3.946
15 H 0.083 0.917
16 C -0.022 4.022
17 O -0.363 6.363
18 N -0.355 5.355
19 C -0.380 4.380
20 H 0.087 0.913
21 C -0.204 4.204
22 N -0.572 5.572
23 Si 0.736 3.264
24 H -0.214 1.214
25 H -0.217 1.217
26 H -0.213 1.213
27 C -0.049 4.049
28 C -0.227 4.227
29 H 0.076 0.924
30 H 0.072 0.928
31 H 0.077 0.923
32 H 0.089 0.911
33 H 0.080 0.920
34 H 0.091 0.909
35 H 0.097 0.903
36 H 0.067 0.933
37 H 0.084 0.916
38 H 0.089 0.911
39 H 0.143 0.857
40 H 0.150 0.850
41 H 0.244 0.756
42 H 0.094 0.906
43 H 0.078 0.922
44 H 0.066 0.934
45 H 0.045 0.955
46 H 0.208 0.792
47 H 0.224 0.776
48 H 0.066 0.934
49 H 0.149 0.851
50 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 0.921 8.285 17.323 19.224
hybrid contribution -1.215 -0.336 -1.005 1.611
sum -0.293 7.950 16.318 18.154
Atomic orbital electron populations
1.21707 0.95135 1.02164 1.01860 1.21992 0.96100 0.97458 1.02919
1.21549 0.79108 0.96760 1.02845 1.46388 1.04885 1.79322 1.03219
1.21651 0.97344 1.01153 0.85037 1.17988 0.91245 0.91790 0.85713
1.20568 0.91835 1.12657 0.98456 1.20950 1.00125 0.91781 0.90341
1.19730 0.93478 1.12751 0.93559 1.18155 0.87055 0.76206 0.83839
1.90711 1.13648 1.51865 1.87960 1.45898 1.11178 1.73859 1.05294
1.21522 0.94671 1.01957 0.82333 1.20602 0.90100 0.93371 0.90549
0.91717 1.23029 0.92336 0.85937 1.00869 1.86580 1.60991 1.47095
1.41611 1.42375 1.12619 1.16525 1.63965 1.19174 0.90445 1.00898
1.27472 0.91284 1.24732 0.98474 0.96397 1.00750 1.69671 1.36111
1.06373 1.45009 0.86324 0.84435 0.76680 0.78994 1.21368 1.21736
1.21267 1.21193 0.93044 0.92540 0.98074 1.20596 0.99815 1.11568
0.90721 0.92362 0.92834 0.92314 0.91135 0.92008 0.90906 0.90257
0.93307 0.91639 0.91112 0.85744 0.85006 0.75556 0.90629 0.92203
0.93373 0.95541 0.79220 0.77618 0.93403 0.85144 0.85560
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16
2 C -0.15 -1.21 6.26 -26.73 -0.17 -1.38 16
3 C 0.12 0.98 5.15 -4.04 -0.02 0.96 16
4 N -0.63 -6.03 2.99 -179.63 -0.54 -6.57 16
5 C 0.09 0.65 10.18 59.85 0.61 1.25 16
6 C 0.24 2.87 6.55 -83.86 -0.55 2.32 16
7 C -0.21 -2.63 9.18 -39.45 -0.36 -2.99 16
8 C -0.01 -0.18 9.58 -39.23 -0.38 -0.56 16
9 C -0.19 -3.11 5.88 -104.95 -0.62 -3.72 16
10 C 0.56 10.60 7.76 -12.48 -0.10 10.51 16
11 O -0.56 -12.09 16.34 5.28 0.09 -12.00 16
12 N -0.71 -13.16 5.34 -61.35 -0.33 -13.49 16
13 C 0.12 2.25 5.12 -4.04 -0.02 2.23 16
14 C 0.16 3.22 2.84 -67.93 -0.19 3.02 16
15 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16
16 C 0.06 1.06 6.86 37.16 0.25 1.31 16
17 O -0.56 -10.27 12.64 -35.23 -0.45 -10.71 16
18 N -0.71 -17.20 4.51 -53.42 -0.24 -17.44 16
19 C -0.25 -6.55 9.93 -15.06 -0.15 -6.70 16
20 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16
21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16
22 N -0.92 -27.24 13.06 55.49 0.72 -26.51 16
23 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16
24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
25 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16
26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
27 C -0.03 -0.43 9.53 -39.23 -0.37 -0.81 16
28 C -0.20 -2.69 9.18 -39.45 -0.36 -3.05 16
29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16
34 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16
35 H 0.08 0.67 6.17 -51.93 -0.32 0.35 16
36 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
37 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16
38 H 0.07 0.49 6.17 -51.93 -0.32 0.17 16
39 H 0.12 1.23 6.11 -52.49 -0.32 0.91 16
40 H 0.13 1.89 7.64 -52.48 -0.40 1.49 16
41 H 0.41 7.45 6.16 -40.82 -0.25 7.20 16
42 H 0.08 1.60 7.39 -51.93 -0.38 1.21 16
43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16
44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16
45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16
46 H 0.36 4.82 9.12 45.56 0.42 5.24 16
47 H 0.39 10.48 7.80 -40.82 -0.32 10.16 16
48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
49 H 0.13 1.94 6.39 -52.48 -0.34 1.60 16
50 H 0.13 1.47 6.11 -52.49 -0.32 1.15 16
LS Contribution 407.84 15.07 6.15 6.15
Total: -1.00 -33.13 407.84 -8.93 -42.07
By element:
Atomic # 1 Polarization: 27.68 SS G_CDS: -7.17 Total: 20.51 kcal
Atomic # 6 Polarization: 3.54 SS G_CDS: -2.15 Total: 1.39 kcal
Atomic # 7 Polarization: -63.62 SS G_CDS: -0.38 Total: -64.00 kcal
Atomic # 8 Polarization: -22.36 SS G_CDS: -0.36 Total: -22.72 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal
Total LS contribution 6.15 Total: 6.15 kcal
Total: -33.13 -8.93 -42.07 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700808942.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.100 kcal
(2) G-P(sol) polarization free energy of solvation -33.131 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.231 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.166 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds