Wall clock time and date at job start Tue Mar 31 2020 19:08:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47040 * 2 1
4 4 N 1.46504 * 109.46984 * 180.02562 * 3 2 1
5 5 C 1.46505 * 119.99504 * 269.99818 * 4 3 2
6 6 C 1.39043 * 120.00042 * 89.99957 * 4 3 2
7 7 C 1.39225 * 119.92961 * 180.02562 * 6 4 3
8 8 C 1.37598 * 120.06836 * 180.02562 * 7 6 4
9 9 C 1.39798 * 119.93393 * 359.97438 * 8 7 6
10 10 C 1.47518 * 120.07239 * 180.02562 * 9 8 7
11 11 O 1.21602 * 119.99856 * 359.97438 * 10 9 8
12 12 N 1.34776 * 120.00063 * 180.02562 * 10 9 8
13 13 C 1.46501 * 119.99681 * 179.97438 * 12 10 9
14 14 C 1.53005 * 109.47085 * 180.02562 * 13 12 10
15 15 H 1.09001 * 109.46812 * 64.99732 * 14 13 12
16 16 C 1.52997 * 109.47452 * 184.99949 * 14 13 12
17 17 O 1.42906 * 109.47007 * 54.99567 * 16 14 13
18 18 N 1.46506 * 109.46831 * 305.00177 * 14 13 12
19 19 C 1.36936 * 119.99838 * 154.99889 * 18 14 13
20 20 H 1.07999 * 120.00085 * 0.02562 * 19 18 14
21 21 C 1.38815 * 119.99824 * 179.97438 * 19 18 14
22 22 N 1.31616 * 119.99954 * 0.02562 * 21 19 18
23 23 Si 1.86794 * 119.99939 * 179.97438 * 21 19 18
24 24 H 1.48500 * 109.47040 * 60.00288 * 23 21 19
25 25 H 1.48506 * 109.47344 * 180.02562 * 23 21 19
26 26 H 1.48503 * 109.47287 * 300.00283 * 23 21 19
27 27 C 1.39794 * 119.86171 * 0.27636 * 9 8 7
28 28 C 1.37615 * 119.92751 * 359.46198 * 27 9 8
29 29 H 1.09004 * 109.47283 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47481 * 299.99935 * 1 2 3
31 31 H 1.09001 * 109.47078 * 60.00171 * 1 2 3
32 32 H 1.09000 * 109.47120 * 239.99662 * 2 1 3
33 33 H 1.09003 * 109.46690 * 120.00180 * 2 1 3
34 34 H 1.08994 * 109.46857 * 60.00175 * 3 2 1
35 35 H 1.09001 * 109.47045 * 299.99849 * 3 2 1
36 36 H 1.08993 * 109.47119 * 269.99853 * 5 4 3
37 37 H 1.08994 * 109.47205 * 30.00524 * 5 4 3
38 38 H 1.09001 * 109.46862 * 149.99982 * 5 4 3
39 39 H 1.07999 * 119.96259 * 0.02562 * 7 6 4
40 40 H 1.08006 * 120.03466 * 179.97438 * 8 7 6
41 41 H 0.96998 * 120.00301 * 359.97438 * 12 10 9
42 42 H 1.09000 * 109.47818 * 59.99929 * 13 12 10
43 43 H 1.09001 * 109.47363 * 299.99334 * 13 12 10
44 44 H 1.08998 * 109.47192 * 174.99730 * 16 14 13
45 45 H 1.09000 * 109.46875 * 295.00133 * 16 14 13
46 46 H 0.96700 * 113.99791 * 179.97438 * 17 16 14
47 47 H 0.97000 * 119.99812 * 334.99233 * 18 14 13
48 48 H 0.97000 * 120.00432 * 179.97438 * 22 21 19
49 49 H 1.08003 * 120.03887 * 179.73010 * 27 9 8
50 50 H 1.07994 * 119.96469 * 180.25174 * 28 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5050 1.4425 -0.0006
5 6 4.2380 1.4423 1.2679
6 6 4.1997 1.4426 -1.2051
7 6 5.5920 1.4421 -1.2039
8 6 6.2824 1.4428 -2.3942
9 6 5.5844 1.4435 -3.6054
10 6 6.3215 1.4437 -4.8833
11 8 7.5375 1.4437 -4.8838
12 7 5.6471 1.4449 -6.0502
13 6 6.3792 1.4456 -7.3192
14 6 5.3845 1.4476 -8.4818
15 1 4.8190 2.3794 -8.4745
16 6 6.1447 1.3227 -9.8037
17 8 6.9762 0.1610 -9.7671
18 7 4.4642 0.3167 -8.3389
19 6 3.2199 0.3705 -8.9082
20 1 2.9172 1.2463 -9.4629
21 6 2.3481 -0.7013 -8.7733
22 7 2.7172 -1.7689 -8.0978
23 14 0.6505 -0.6277 -9.5493
24 1 0.7847 -0.4573 -11.0183
25 1 -0.0804 -1.8880 -9.2615
26 1 -0.1026 0.5208 -8.9844
27 6 4.1865 1.4494 -3.6033
28 6 3.5017 1.4432 -2.4096
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5138 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8933 -0.5139 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 1.6766 1.9562 0.8900
35 1 1.6766 1.9563 -0.8900
36 1 4.4198 2.4699 1.5826
37 1 3.6492 0.9284 2.0276
38 1 5.1903 0.9285 1.1371
39 1 6.1306 1.4411 -0.2678
40 1 7.3624 1.4428 -2.3927
41 1 4.6771 1.4453 -6.0499
42 1 7.0055 0.5555 -7.3780
43 1 7.0061 2.3355 -7.3765
44 1 5.4335 1.2347 -10.6249
45 1 6.7634 2.2077 -9.9520
46 1 7.4885 0.0184 -10.5747
47 1 4.7362 -0.4701 -7.8412
48 1 2.1079 -2.5177 -8.0031
49 1 3.6444 1.4543 -4.5374
50 1 2.4218 1.4436 -2.4072
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001700808942.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:26
Heat of formation + Delta-G solvation = -67.705962 kcal
Electronic energy + Delta-G solvation = -28917.736908 eV
Core-core repulsion = 24944.180318 eV
Total energy + Delta-G solvation = -3973.556590 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.22576 -40.09968 -38.60182 -37.44205 -36.37846 -35.20021 -34.37771 -33.17556
-32.00357 -31.16818 -29.87640 -28.40770 -27.03836 -25.84554 -25.46179 -23.37568
-23.20130 -22.02609 -21.60229 -20.85585 -19.52961 -18.97473 -18.15185 -17.82109
-17.40064 -16.77733 -16.39971 -16.14272 -16.04504 -15.77287 -15.66684 -15.29547
-15.21115 -14.91704 -14.73942 -14.54453 -14.44216 -14.28975 -13.92893 -13.70107
-13.37348 -13.30802 -13.07201 -12.98713 -12.78903 -12.72955 -12.66708 -12.61236
-12.27653 -12.22416 -11.90577 -11.75812 -11.71443 -11.54536 -11.04625 -10.85154
-10.80570 -10.70793 -9.99059 -9.97043 -8.99221 -8.27207 -7.87506 -5.17403
0.09054 0.48988 1.50838 1.52816 1.58851 1.96933 2.12989 2.35666
2.59502 3.00282 3.44251 3.62456 3.78206 3.87289 3.91809 3.95174
4.03603 4.06774 4.08778 4.28433 4.38019 4.43424 4.45894 4.46189
4.56728 4.59728 4.61936 4.67139 4.70993 4.73705 4.87875 4.92326
4.94216 5.00908 5.06763 5.18196 5.20177 5.23380 5.24423 5.35627
5.42999 5.49129 5.55031 5.59549 5.76919 6.29394 6.30186 6.45324
6.65229 7.08073 7.29870 7.38365 8.10347 8.36796 9.34981
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.009217 B = 0.003279 C = 0.002500
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3037.128326 B = 8538.195510 C =11197.375814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.141 4.141
3 C 0.116 3.884
4 N -0.624 5.624
5 C 0.083 3.917
6 C 0.244 3.756
7 C -0.209 4.209
8 C -0.018 4.018
9 C -0.220 4.220
10 C 0.555 3.445
11 O -0.595 6.595
12 N -0.710 5.710
13 C 0.130 3.870
14 C 0.161 3.839
15 H 0.079 0.921
16 C 0.065 3.935
17 O -0.584 6.584
18 N -0.723 5.723
19 C -0.240 4.240
20 H 0.081 0.919
21 C -0.069 4.069
22 N -0.966 5.966
23 Si 0.969 3.031
24 H -0.282 1.282
25 H -0.302 1.302
26 H -0.274 1.274
27 C -0.034 4.034
28 C -0.211 4.211
29 H 0.054 0.946
30 H 0.070 0.930
31 H 0.054 0.946
32 H 0.044 0.956
33 H 0.067 0.933
34 H 0.099 0.901
35 H 0.076 0.924
36 H 0.062 0.938
37 H 0.085 0.915
38 H 0.073 0.927
39 H 0.153 0.847
40 H 0.129 0.871
41 H 0.408 0.592
42 H 0.049 0.951
43 H 0.077 0.923
44 H 0.038 0.962
45 H 0.066 0.934
46 H 0.385 0.615
47 H 0.372 0.628
48 H 0.248 0.752
49 H 0.123 0.877
50 H 0.139 0.861
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.353 9.921 18.181 20.715
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.180 4.180
3 C -0.006 4.006
4 N -0.331 5.331
5 C -0.059 4.059
6 C 0.138 3.862
7 C -0.231 4.231
8 C -0.037 4.037
9 C -0.225 4.225
10 C 0.346 3.654
11 O -0.479 6.479
12 N -0.361 5.361
13 C 0.005 3.995
14 C 0.052 3.948
15 H 0.097 0.903
16 C -0.016 4.016
17 O -0.391 6.391
18 N -0.362 5.362
19 C -0.371 4.371
20 H 0.099 0.901
21 C -0.261 4.261
22 N -0.616 5.616
23 Si 0.798 3.202
24 H -0.209 1.209
25 H -0.229 1.229
26 H -0.200 1.200
27 C -0.054 4.054
28 C -0.234 4.234
29 H 0.073 0.927
30 H 0.089 0.911
31 H 0.073 0.927
32 H 0.063 0.937
33 H 0.086 0.914
34 H 0.117 0.883
35 H 0.094 0.906
36 H 0.080 0.920
37 H 0.103 0.897
38 H 0.092 0.908
39 H 0.170 0.830
40 H 0.147 0.853
41 H 0.245 0.755
42 H 0.067 0.933
43 H 0.095 0.905
44 H 0.056 0.944
45 H 0.084 0.916
46 H 0.233 0.767
47 H 0.203 0.797
48 H 0.057 0.943
49 H 0.140 0.860
50 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -0.048 9.958 18.864 21.331
hybrid contribution -0.893 -0.788 -1.353 1.803
sum -0.941 9.170 17.511 19.789
Atomic orbital electron populations
1.21693 0.94297 1.02171 1.02520 1.21924 0.96810 0.97350 1.01882
1.21712 0.78176 0.96765 1.03976 1.46685 1.05711 1.77509 1.03183
1.21900 0.97619 1.02361 0.84058 1.18104 0.91425 0.90179 0.86511
1.20791 0.92043 1.11655 0.98653 1.21023 1.00131 0.91962 0.90626
1.19609 0.93972 1.16120 0.92834 1.18613 0.86829 0.75260 0.84707
1.90670 1.14987 1.53728 1.88475 1.45897 1.11120 1.73755 1.05325
1.21383 0.94354 1.01392 0.82350 1.20851 0.89899 0.92235 0.91834
0.90286 1.22869 0.92661 0.87324 0.98712 1.86534 1.61419 1.47605
1.43514 1.42475 1.12931 1.17057 1.63785 1.19586 0.90979 1.00713
1.25844 0.90071 1.25478 1.02091 0.96426 1.02142 1.69849 1.37152
1.07157 1.47421 0.85292 0.80370 0.76319 0.78186 1.20874 1.22877
1.19994 1.21147 0.92559 0.93070 0.98623 1.20735 1.00499 1.11558
0.90576 0.92733 0.91107 0.92713 0.93741 0.91445 0.88303 0.90616
0.91983 0.89662 0.90841 0.82961 0.85316 0.75514 0.93279 0.90527
0.94372 0.91611 0.76692 0.79654 0.94310 0.85951 0.84296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16
2 C -0.14 -2.09 6.26 30.59 0.19 -1.90 16
3 C 0.12 1.58 5.15 86.38 0.44 2.02 16
4 N -0.62 -10.28 2.99 -722.21 -2.16 -12.44 16
5 C 0.08 0.87 10.18 127.77 1.30 2.17 16
6 C 0.24 5.56 6.55 38.47 0.25 5.81 16
7 C -0.21 -4.87 9.18 22.36 0.21 -4.66 16
8 C -0.02 -0.52 9.58 22.50 0.22 -0.30 16
9 C -0.22 -7.44 5.88 -20.08 -0.12 -7.56 16
10 C 0.56 21.94 7.76 86.69 0.67 22.62 16
11 O -0.60 -26.63 16.34 -4.04 -0.07 -26.69 16
12 N -0.71 -27.20 5.34 -466.26 -2.49 -29.69 16
13 C 0.13 4.94 5.12 86.38 0.44 5.39 16
14 C 0.16 6.21 2.84 44.99 0.13 6.33 16
15 H 0.08 2.83 8.08 -2.39 -0.02 2.81 16
16 C 0.07 2.21 6.86 71.98 0.49 2.71 16
17 O -0.58 -21.09 12.64 -148.98 -1.88 -22.97 16
18 N -0.72 -35.28 4.51 -322.92 -1.46 -36.74 16
19 C -0.24 -12.59 9.93 84.03 0.83 -11.76 16
20 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16
21 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16
22 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16
23 Si 0.97 44.75 29.55 68.60 2.03 46.78 16
24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16
25 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16
26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16
27 C -0.03 -1.05 9.53 22.50 0.21 -0.84 16
28 C -0.21 -5.46 9.18 22.36 0.21 -5.26 16
29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16
30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16
32 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16
34 H 0.10 0.89 8.07 -2.39 -0.02 0.87 16
35 H 0.08 1.11 6.17 -2.39 -0.01 1.10 16
36 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
37 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16
38 H 0.07 0.77 6.17 -2.39 -0.01 0.75 16
39 H 0.15 2.62 6.11 -2.91 -0.02 2.60 16
40 H 0.13 3.78 7.64 -2.91 -0.02 3.76 16
41 H 0.41 15.50 6.16 -92.71 -0.57 14.93 16
42 H 0.05 2.14 7.39 -2.39 -0.02 2.12 16
43 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16
44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16
45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
46 H 0.39 9.79 9.12 -74.06 -0.68 9.11 16
47 H 0.37 20.68 7.80 -92.71 -0.72 19.96 16
48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16
49 H 0.12 3.84 6.39 -2.91 -0.02 3.82 16
50 H 0.14 3.14 6.11 -2.91 -0.02 3.13 16
Total: -1.00 -72.88 407.84 -0.08 -72.96
By element:
Atomic # 1 Polarization: 57.70 SS G_CDS: -1.00 Total: 56.70 kcal
Atomic # 6 Polarization: 3.58 SS G_CDS: 6.66 Total: 10.24 kcal
Atomic # 7 Polarization: -131.20 SS G_CDS: -5.82 Total: -137.02 kcal
Atomic # 8 Polarization: -47.72 SS G_CDS: -1.95 Total: -49.67 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal
Total: -72.88 -0.08 -72.96 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001700808942.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 5.253 kcal
(2) G-P(sol) polarization free energy of solvation -72.880 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.627 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.959 kcal
(6) G-S(sol) free energy of system = (1) + (5) -67.706 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds