Wall clock time and date at job start Tue Mar 31 2020 18:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 H 1.08995 * 109.46793 * 54.99965 * 3 2 1 5 5 C 1.52998 * 109.46935 * 174.99821 * 3 2 1 6 6 O 1.42901 * 109.47170 * 294.99765 * 3 2 1 7 7 C 1.35687 * 116.99798 * 149.99873 * 6 3 2 8 8 C 1.38891 * 119.62017 * 180.02562 * 7 6 3 9 9 C 1.39574 * 118.94729 * 179.97438 * 8 7 6 10 10 C 1.48167 * 120.89492 * 179.97438 * 9 8 7 11 11 O 1.21508 * 119.99585 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99933 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00230 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47377 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47017 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99550 * 90.00257 * 15 14 13 17 17 H 1.08001 * 120.00161 * 217.58103 * 16 15 14 18 18 C 1.38809 * 120.00471 * 37.58006 * 16 15 14 19 19 N 1.31623 * 119.99825 * 21.42303 * 18 16 15 20 20 Si 1.86800 * 120.00470 * 201.42825 * 18 16 15 21 21 H 1.48499 * 109.47243 * 89.99671 * 20 18 16 22 22 H 1.48501 * 109.47199 * 209.99959 * 20 18 16 23 23 H 1.48503 * 109.46700 * 329.99506 * 20 18 16 24 24 C 1.46494 * 120.00334 * 270.00262 * 15 14 13 25 25 C 1.53002 * 109.46975 * 95.31320 * 24 15 14 26 26 C 1.39964 * 118.21291 * 0.02562 * 9 8 7 27 27 C 1.37978 * 119.13684 * 359.97438 * 26 9 8 28 28 N 1.31910 * 120.97361 * 359.74123 * 27 26 9 29 29 H 1.09004 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47486 * 299.99791 * 1 2 3 31 31 H 1.09003 * 109.46857 * 60.00226 * 1 2 3 32 32 H 1.08998 * 109.47086 * 239.99869 * 2 1 3 33 33 H 1.08999 * 109.47188 * 120.00145 * 2 1 3 34 34 H 1.09006 * 109.46899 * 60.00207 * 5 3 2 35 35 H 1.09000 * 109.47439 * 300.00156 * 5 3 2 36 36 H 1.09004 * 109.47182 * 179.97438 * 5 3 2 37 37 H 1.08002 * 120.53192 * 359.96175 * 8 7 6 38 38 H 0.97007 * 120.00633 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.46519 * 299.99921 * 13 12 10 40 40 H 1.09002 * 109.46571 * 59.99399 * 13 12 10 41 41 H 1.08996 * 109.47256 * 300.00139 * 14 13 12 42 42 H 1.09007 * 109.47099 * 60.00036 * 14 13 12 43 43 H 0.96997 * 120.00304 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47179 * 215.30704 * 24 15 14 45 45 H 1.08993 * 109.47461 * 335.30848 * 24 15 14 46 46 H 1.09005 * 109.47255 * 180.02562 * 25 24 15 47 47 H 1.09001 * 109.47150 * 299.99492 * 25 24 15 48 48 H 1.09001 * 109.47718 * 60.00058 * 25 24 15 49 49 H 1.08008 * 120.42961 * 179.97438 * 26 9 8 50 50 H 1.07997 * 119.51278 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 8 1.6620 2.0814 -1.2211 7 6 1.4506 3.4209 -1.1756 8 6 1.0805 4.0971 -2.3310 9 6 0.8661 5.4748 -2.2682 10 6 0.4706 6.2390 -3.4744 11 8 0.3284 5.6665 -4.5367 12 7 0.2687 7.5690 -3.3933 13 6 -0.1228 8.3246 -4.5858 14 6 -0.2867 9.8018 -4.2226 15 7 -0.6776 10.5574 -5.4153 16 6 -2.0031 10.7212 -5.7180 17 1 -2.3291 10.6959 -6.7473 18 6 -2.9277 10.9197 -4.7019 19 7 -2.5310 11.3663 -3.5291 20 14 -4.7351 10.5529 -4.9989 21 1 -5.0185 9.1395 -4.6425 22 1 -5.5672 11.4516 -4.1590 23 1 -5.0566 10.7763 -6.4314 24 6 0.3493 11.1378 -6.2840 25 6 0.6391 10.1798 -7.4413 26 6 1.0357 6.1153 -1.0353 27 6 1.4051 5.3685 0.0645 28 7 1.5937 4.0664 -0.0313 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9994 0.9053 -0.7161 35 1 3.8532 0.9570 1.0571 36 1 3.9282 2.4720 0.1253 37 1 0.9607 3.5653 -3.2634 38 1 0.3819 8.0261 -2.5451 39 1 0.6472 8.2213 -5.3503 40 1 -1.0678 7.9375 -4.9671 41 1 -1.0568 9.9048 -3.4582 42 1 0.6581 10.1891 -3.8410 43 1 -3.1770 11.5047 -2.8189 44 1 -0.0053 12.0893 -6.6802 45 1 1.2613 11.3005 -5.7099 46 1 1.4035 10.6114 -8.0875 47 1 0.9938 9.2282 -7.0452 48 1 -0.2730 10.0171 -8.0155 49 1 0.8795 7.1803 -0.9460 50 1 1.5372 5.8564 1.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713495995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:14 Heat of formation + Delta-G solvation = -29.453503 kcal Electronic energy + Delta-G solvation = -28584.660444 eV Core-core repulsion = 24612.762605 eV Total energy + Delta-G solvation = -3971.897839 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.01663 -39.48674 -38.21786 -36.36426 -34.57859 -34.22447 -32.76022 -31.92137 -30.76812 -30.03061 -29.60314 -27.67786 -25.19305 -24.37698 -23.87725 -23.40667 -22.09377 -21.31407 -20.50427 -20.16183 -18.78803 -17.41078 -16.65552 -16.52888 -15.98446 -15.72454 -15.44363 -15.23164 -14.80778 -14.73341 -14.36838 -14.20112 -14.07256 -13.82822 -13.76684 -13.52481 -13.37656 -12.91681 -12.68528 -12.42514 -12.25351 -12.15866 -12.09271 -12.01793 -11.55818 -11.43466 -11.15825 -11.06940 -10.94123 -10.80912 -10.69693 -10.53638 -10.22097 -10.09297 -10.04546 -9.92867 -9.82905 -9.60062 -8.71702 -8.66540 -8.51708 -6.67352 -5.87874 -3.46720 0.60284 0.96231 2.68925 2.96755 3.32315 3.39855 3.40981 3.43729 3.73981 4.04182 4.39350 4.42583 4.56539 4.61815 4.76080 4.81023 4.85790 4.93256 5.05672 5.21834 5.23823 5.26117 5.40171 5.47771 5.52009 5.57355 5.60554 5.67311 5.74651 5.83325 5.90862 5.95408 5.97504 6.04318 6.11018 6.17632 6.34991 6.37040 6.45646 6.64884 6.73713 6.88525 6.94736 7.05667 7.13277 7.47073 7.58905 7.75803 7.77263 8.37228 8.44388 9.10294 9.72022 10.29883 11.12322 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002252 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.351973 B =12432.837247 C =13020.595632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C 0.085 3.915 4 H 0.091 0.909 5 C -0.169 4.169 6 O -0.297 6.297 7 C 0.321 3.679 8 C -0.137 4.137 9 C -0.045 4.045 10 C 0.549 3.451 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.095 3.905 14 C 0.137 3.863 15 N -0.579 5.579 16 C -0.261 4.261 17 H 0.062 0.938 18 C 0.013 3.987 19 N -0.887 5.887 20 Si 0.897 3.103 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.276 1.276 24 C 0.141 3.859 25 C -0.168 4.168 26 C -0.183 4.183 27 C 0.137 3.863 28 N -0.530 5.530 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.153 0.847 38 H 0.398 0.602 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.030 0.970 43 H 0.255 0.745 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.037 0.963 47 H 0.044 0.956 48 H 0.050 0.950 49 H 0.144 0.856 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.861 -16.417 10.915 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.109 0.891 5 C -0.227 4.227 6 O -0.205 6.205 7 C 0.142 3.858 8 C -0.158 4.158 9 C -0.056 4.056 10 C 0.334 3.666 11 O -0.410 6.410 12 N -0.358 5.358 13 C -0.029 4.029 14 C 0.009 3.991 15 N -0.300 5.300 16 C -0.390 4.390 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.201 1.201 24 C 0.015 3.985 25 C -0.228 4.228 26 C -0.203 4.203 27 C -0.018 4.018 28 N -0.254 5.254 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.048 0.952 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.162 0.838 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 10.863 -17.364 10.764 23.138 hybrid contribution -1.083 0.465 -0.194 1.194 sum 9.780 -16.898 10.571 22.202 Atomic orbital electron populations 1.21767 0.95146 1.01855 1.02436 1.21692 0.96862 0.94239 1.03096 1.22430 0.95217 0.93129 0.86367 0.89147 1.22219 0.95053 1.02948 1.02442 1.86311 1.82376 1.15841 1.35934 1.19612 0.92062 0.84783 0.89365 1.21134 1.02680 0.93214 0.98815 1.20309 0.97433 0.93468 0.94358 1.18099 0.78392 0.82612 0.87534 1.90774 1.51392 1.69392 1.29489 1.46063 1.68300 1.07057 1.14372 1.22587 0.99841 0.94978 0.85530 1.21065 0.99469 0.85856 0.92676 1.43607 1.02108 1.57705 1.26541 1.19039 0.82417 1.44808 0.92772 0.91998 1.25192 0.98372 0.98122 0.97026 1.69991 1.33916 1.44740 1.04318 0.86380 0.85004 0.78020 0.77947 1.21194 1.21677 1.20132 1.20886 0.91485 0.94727 0.91429 1.22393 1.00132 1.00468 0.99820 1.22224 1.03330 1.02003 0.92789 1.22353 0.93122 0.87660 0.98672 1.67116 1.20064 1.11768 1.26496 0.92438 0.92758 0.92047 0.90906 0.90054 0.91957 0.91120 0.91917 0.82972 0.76700 0.92619 0.91403 0.88321 0.95194 0.93490 0.93516 0.94699 0.94417 0.93681 0.93071 0.83809 0.81739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.81 37.16 0.36 -0.84 16 2 C -0.12 -0.88 5.64 -26.73 -0.15 -1.04 16 3 C 0.08 0.77 2.49 -26.73 -0.07 0.71 16 4 H 0.09 0.87 6.97 -51.93 -0.36 0.51 16 5 C -0.17 -1.34 9.53 37.16 0.35 -0.98 16 6 O -0.30 -3.50 9.30 -18.76 -0.17 -3.68 16 7 C 0.32 4.04 7.45 -17.17 -0.13 3.92 16 8 C -0.14 -1.87 9.61 -38.84 -0.37 -2.24 16 9 C -0.04 -0.62 5.91 -104.67 -0.62 -1.23 16 10 C 0.55 9.28 7.80 -12.19 -0.10 9.18 16 11 O -0.53 -10.95 16.44 5.36 0.09 -10.86 16 12 N -0.71 -11.52 5.51 -61.15 -0.34 -11.85 16 13 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 14 C 0.14 2.94 5.45 -4.04 -0.02 2.92 16 15 N -0.58 -13.74 2.43 -173.25 -0.42 -14.16 16 16 C -0.26 -6.88 9.45 -15.06 -0.14 -7.02 16 17 H 0.06 1.65 7.92 -52.49 -0.42 1.24 16 18 C 0.01 0.35 4.95 -17.43 -0.09 0.27 16 19 N -0.89 -24.25 11.47 55.49 0.64 -23.62 16 20 Si 0.90 21.17 29.60 -169.99 -5.03 16.14 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.14 2.89 6.44 -4.04 -0.03 2.86 16 25 C -0.17 -3.07 10.21 37.16 0.38 -2.69 16 26 C -0.18 -1.96 9.61 -39.03 -0.38 -2.33 16 27 C 0.14 1.34 11.17 -17.61 -0.20 1.15 16 28 N -0.53 -6.10 8.61 -13.38 -0.12 -6.21 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.15 2.14 7.74 -52.49 -0.41 1.73 16 38 H 0.40 5.34 6.61 -40.82 -0.27 5.07 16 39 H 0.06 1.12 6.64 -51.93 -0.34 0.77 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 41 H 0.10 2.38 5.52 -51.93 -0.29 2.09 16 42 H 0.03 0.59 7.86 -51.92 -0.41 0.19 16 43 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 45 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 46 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.04 0.83 6.64 -51.93 -0.34 0.48 16 48 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.14 1.22 6.53 -52.48 -0.34 0.88 16 50 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 410.17 15.07 6.18 6.18 Total: -1.00 -30.82 410.17 -8.58 -39.40 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -8.20 Total: 4.18 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.21 Total: 4.48 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.24 Total: -55.84 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.09 Total: -14.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.82 -8.58 -39.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713495995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.949 kcal (2) G-P(sol) polarization free energy of solvation -30.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds