Wall clock time and date at job start Tue Mar 31 2020 18:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47010 * 2 1 4 4 H 1.08995 * 109.46793 * 54.99965 * 3 2 1 5 5 C 1.52998 * 109.46935 * 174.99821 * 3 2 1 6 6 O 1.42901 * 109.47170 * 294.99765 * 3 2 1 7 7 C 1.35687 * 116.99798 * 149.99873 * 6 3 2 8 8 C 1.38891 * 119.62017 * 180.02562 * 7 6 3 9 9 C 1.39574 * 118.94729 * 179.97438 * 8 7 6 10 10 C 1.48167 * 120.89492 * 179.97438 * 9 8 7 11 11 O 1.21508 * 119.99585 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99933 * 180.02562 * 10 9 8 13 13 C 1.46505 * 120.00230 * 180.02562 * 12 10 9 14 14 C 1.52995 * 109.47377 * 179.97438 * 13 12 10 15 15 N 1.46500 * 109.47017 * 179.97438 * 14 13 12 16 16 C 1.36939 * 119.99550 * 90.00257 * 15 14 13 17 17 H 1.08001 * 120.00161 * 217.58103 * 16 15 14 18 18 C 1.38809 * 120.00471 * 37.58006 * 16 15 14 19 19 N 1.31623 * 119.99825 * 21.42303 * 18 16 15 20 20 Si 1.86800 * 120.00470 * 201.42825 * 18 16 15 21 21 H 1.48499 * 109.47243 * 89.99671 * 20 18 16 22 22 H 1.48501 * 109.47199 * 209.99959 * 20 18 16 23 23 H 1.48503 * 109.46700 * 329.99506 * 20 18 16 24 24 C 1.46494 * 120.00334 * 270.00262 * 15 14 13 25 25 C 1.53002 * 109.46975 * 95.31320 * 24 15 14 26 26 C 1.39964 * 118.21291 * 0.02562 * 9 8 7 27 27 C 1.37978 * 119.13684 * 359.97438 * 26 9 8 28 28 N 1.31910 * 120.97361 * 359.74123 * 27 26 9 29 29 H 1.09004 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47486 * 299.99791 * 1 2 3 31 31 H 1.09003 * 109.46857 * 60.00226 * 1 2 3 32 32 H 1.08998 * 109.47086 * 239.99869 * 2 1 3 33 33 H 1.08999 * 109.47188 * 120.00145 * 2 1 3 34 34 H 1.09006 * 109.46899 * 60.00207 * 5 3 2 35 35 H 1.09000 * 109.47439 * 300.00156 * 5 3 2 36 36 H 1.09004 * 109.47182 * 179.97438 * 5 3 2 37 37 H 1.08002 * 120.53192 * 359.96175 * 8 7 6 38 38 H 0.97007 * 120.00633 * 359.97438 * 12 10 9 39 39 H 1.08997 * 109.46519 * 299.99921 * 13 12 10 40 40 H 1.09002 * 109.46571 * 59.99399 * 13 12 10 41 41 H 1.08996 * 109.47256 * 300.00139 * 14 13 12 42 42 H 1.09007 * 109.47099 * 60.00036 * 14 13 12 43 43 H 0.96997 * 120.00304 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.47179 * 215.30704 * 24 15 14 45 45 H 1.08993 * 109.47461 * 335.30848 * 24 15 14 46 46 H 1.09005 * 109.47255 * 180.02562 * 25 24 15 47 47 H 1.09001 * 109.47150 * 299.99492 * 25 24 15 48 48 H 1.09001 * 109.47718 * 60.00058 * 25 24 15 49 49 H 1.08008 * 120.42961 * 179.97438 * 26 9 8 50 50 H 1.07997 * 119.51278 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4443 0.1258 6 8 1.6620 2.0814 -1.2211 7 6 1.4506 3.4209 -1.1756 8 6 1.0805 4.0971 -2.3310 9 6 0.8661 5.4748 -2.2682 10 6 0.4706 6.2390 -3.4744 11 8 0.3284 5.6665 -4.5367 12 7 0.2687 7.5690 -3.3933 13 6 -0.1228 8.3246 -4.5858 14 6 -0.2867 9.8018 -4.2226 15 7 -0.6776 10.5574 -5.4153 16 6 -2.0031 10.7212 -5.7180 17 1 -2.3291 10.6959 -6.7473 18 6 -2.9277 10.9197 -4.7019 19 7 -2.5310 11.3663 -3.5291 20 14 -4.7351 10.5529 -4.9989 21 1 -5.0185 9.1395 -4.6425 22 1 -5.5672 11.4516 -4.1590 23 1 -5.0566 10.7763 -6.4314 24 6 0.3493 11.1378 -6.2840 25 6 0.6391 10.1798 -7.4413 26 6 1.0357 6.1153 -1.0353 27 6 1.4051 5.3685 0.0645 28 7 1.5937 4.0664 -0.0313 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.9994 0.9053 -0.7161 35 1 3.8532 0.9570 1.0571 36 1 3.9282 2.4720 0.1253 37 1 0.9607 3.5653 -3.2634 38 1 0.3819 8.0261 -2.5451 39 1 0.6472 8.2213 -5.3503 40 1 -1.0678 7.9375 -4.9671 41 1 -1.0568 9.9048 -3.4582 42 1 0.6581 10.1891 -3.8410 43 1 -3.1770 11.5047 -2.8189 44 1 -0.0053 12.0893 -6.6802 45 1 1.2613 11.3005 -5.7099 46 1 1.4035 10.6114 -8.0875 47 1 0.9938 9.2282 -7.0452 48 1 -0.2730 10.0171 -8.0155 49 1 0.8795 7.1803 -0.9460 50 1 1.5372 5.8564 1.0189 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713495995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:13 Heat of formation + Delta-G solvation = -48.622432 kcal Electronic energy + Delta-G solvation = -28585.491671 eV Core-core repulsion = 24612.762605 eV Total energy + Delta-G solvation = -3972.729066 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.98270 -40.71772 -39.18134 -38.10657 -35.83861 -35.20107 -33.87311 -33.76565 -31.69991 -31.15205 -30.71309 -29.36588 -26.57774 -25.69893 -24.87028 -24.27347 -23.45382 -22.41392 -22.13284 -21.34376 -19.91023 -18.63100 -18.24602 -17.59800 -17.05840 -16.92545 -16.74969 -16.61546 -16.37365 -15.68742 -15.67945 -15.37322 -15.23121 -14.97724 -14.81835 -14.74116 -14.36805 -14.14949 -14.10889 -13.81593 -13.55825 -13.24544 -13.05227 -13.01367 -12.89133 -12.69777 -12.64989 -12.38586 -12.30048 -12.05175 -12.04001 -11.78733 -11.69026 -11.63010 -11.54615 -11.34484 -11.08500 -10.69114 -10.55347 -10.13049 -9.59520 -8.60206 -7.86466 -5.48943 -0.44333 0.06703 1.43535 1.48237 1.54325 1.72902 1.75476 2.17262 2.49791 2.73507 3.19788 3.23127 3.44418 3.75110 3.78108 3.87495 3.93907 3.98214 4.00587 4.18576 4.30555 4.39050 4.43178 4.47492 4.56834 4.61235 4.66997 4.68676 4.75583 4.79277 4.81999 4.85069 4.97712 5.00140 5.03330 5.09135 5.10222 5.18320 5.20652 5.29464 5.30105 5.35063 5.37724 5.56790 5.65924 5.74061 6.21595 6.40708 6.47769 6.70185 7.04214 7.15722 7.82435 8.34367 9.09476 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.002252 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.351973 B =12432.837247 C =13020.595632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.118 4.118 3 C 0.078 3.922 4 H 0.087 0.913 5 C -0.164 4.164 6 O -0.311 6.311 7 C 0.317 3.683 8 C -0.156 4.156 9 C -0.058 4.058 10 C 0.550 3.450 11 O -0.577 6.577 12 N -0.697 5.697 13 C 0.117 3.883 14 C 0.144 3.856 15 N -0.597 5.597 16 C -0.269 4.269 17 H 0.051 0.949 18 C -0.027 4.027 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.290 1.290 22 H -0.288 1.288 23 H -0.273 1.273 24 C 0.136 3.864 25 C -0.156 4.156 26 C -0.173 4.173 27 C 0.147 3.853 28 N -0.529 5.529 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.136 0.864 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.254 0.746 44 H 0.037 0.963 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.041 0.959 48 H 0.033 0.967 49 H 0.170 0.830 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.036 -16.765 12.927 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.105 0.895 5 C -0.222 4.222 6 O -0.219 6.219 7 C 0.138 3.862 8 C -0.178 4.178 9 C -0.068 4.068 10 C 0.337 3.663 11 O -0.457 6.457 12 N -0.349 5.349 13 C -0.009 4.009 14 C 0.017 3.983 15 N -0.318 5.318 16 C -0.400 4.400 17 H 0.069 0.931 18 C -0.225 4.225 19 N -0.552 5.552 20 Si 0.777 3.223 21 H -0.217 1.217 22 H -0.215 1.215 23 H -0.198 1.198 24 C 0.011 3.989 25 C -0.215 4.215 26 C -0.193 4.193 27 C -0.008 4.008 28 N -0.253 5.253 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.187 0.813 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 12.060 -17.714 12.791 24.957 hybrid contribution -1.385 0.559 -0.776 1.683 sum 10.676 -17.155 12.015 23.508 Atomic orbital electron populations 1.21764 0.95709 1.02385 1.01342 1.21729 0.96326 0.93217 1.04244 1.22691 0.96088 0.93776 0.85178 0.89525 1.22194 0.94002 1.02356 1.03622 1.86301 1.82367 1.15596 1.37597 1.19583 0.92103 0.85222 0.89260 1.21059 1.04255 0.93516 0.98932 1.20039 0.99355 0.93289 0.94156 1.18553 0.77224 0.82494 0.88046 1.90747 1.53287 1.70199 1.31502 1.45826 1.67935 1.06967 1.14141 1.22072 0.98054 0.94195 0.86592 1.20947 0.99418 0.86480 0.91465 1.43844 1.01986 1.58515 1.27437 1.19151 0.84064 1.44350 0.92423 0.93119 1.25726 1.01230 0.98491 0.97087 1.70068 1.34669 1.45684 1.04732 0.85568 0.81554 0.77294 0.77840 1.21711 1.21468 1.19794 1.21017 0.91310 0.94690 0.91877 1.22229 1.00261 0.99895 0.99156 1.22512 1.01976 1.03267 0.91542 1.23078 0.90906 0.86954 0.99896 1.67246 1.19766 1.12637 1.25695 0.91119 0.92658 0.94294 0.91025 0.87527 0.92048 0.88829 0.93239 0.84599 0.74774 0.92889 0.94887 0.90610 0.93211 0.93622 0.94439 0.92789 0.91272 0.94031 0.94738 0.81255 0.77507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.81 71.98 0.71 -1.58 16 2 C -0.12 -1.54 5.64 30.59 0.17 -1.37 16 3 C 0.08 1.33 2.49 30.59 0.08 1.41 16 4 H 0.09 1.54 6.97 -2.39 -0.02 1.52 16 5 C -0.16 -2.34 9.53 71.98 0.69 -1.65 16 6 O -0.31 -7.34 9.30 -90.05 -0.84 -8.18 16 7 C 0.32 7.89 7.45 84.80 0.63 8.53 16 8 C -0.16 -4.37 9.61 22.75 0.22 -4.15 16 9 C -0.06 -1.56 5.91 -19.90 -0.12 -1.68 16 10 C 0.55 18.83 7.80 86.88 0.68 19.51 16 11 O -0.58 -24.66 16.44 -3.74 -0.06 -24.72 16 12 N -0.70 -22.43 5.51 -465.68 -2.57 -25.00 16 13 C 0.12 4.66 6.00 86.38 0.52 5.17 16 14 C 0.14 6.15 5.45 86.38 0.47 6.62 16 15 N -0.60 -28.30 2.43 -702.03 -1.71 -30.01 16 16 C -0.27 -14.36 9.45 84.03 0.79 -13.57 16 17 H 0.05 2.76 7.92 -2.91 -0.02 2.74 16 18 C -0.03 -1.45 4.95 84.86 0.42 -1.03 16 19 N -0.91 -49.72 11.47 21.65 0.25 -49.47 16 20 Si 0.95 43.88 29.60 68.60 2.03 45.92 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 24 C 0.14 5.46 6.44 86.38 0.56 6.02 16 25 C -0.16 -5.52 10.21 71.98 0.73 -4.78 16 26 C -0.17 -3.28 9.61 22.63 0.22 -3.06 16 27 C 0.15 2.42 11.17 84.62 0.94 3.36 16 28 N -0.53 -11.17 8.61 -309.15 -2.66 -13.84 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.04 0.74 7.82 -2.39 -0.02 0.72 16 32 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 37 H 0.14 4.15 7.74 -2.91 -0.02 4.13 16 38 H 0.41 10.48 6.61 -92.70 -0.61 9.86 16 39 H 0.05 2.14 6.64 -2.39 -0.02 2.13 16 40 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.08 3.66 5.52 -2.39 -0.01 3.64 16 42 H 0.05 1.90 7.86 -2.38 -0.02 1.88 16 43 H 0.25 13.44 8.31 -92.71 -0.77 12.67 16 44 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 45 H 0.05 1.94 7.83 -2.39 -0.02 1.92 16 46 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 47 H 0.04 1.48 6.64 -2.39 -0.02 1.47 16 48 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.17 2.29 6.53 -2.91 -0.02 2.27 16 50 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -68.20 410.17 2.47 -65.73 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 0.32 Total: 21.83 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 7.71 Total: 17.74 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -6.69 Total: -118.32 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.90 Total: -32.90 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.92 kcal Total: -68.20 2.47 -65.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713495995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.111 kcal (2) G-P(sol) polarization free energy of solvation -68.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds