Wall clock time and date at job start Tue Mar 31 2020 18:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 H 1.08996 * 109.47109 * 304.99999 * 3 2 1 5 5 C 1.53007 * 109.46695 * 185.00278 * 3 2 1 6 6 O 1.42905 * 109.46823 * 65.00679 * 3 2 1 7 7 C 1.35688 * 116.99575 * 209.99689 * 6 3 2 8 8 C 1.38896 * 119.62104 * 179.97438 * 7 6 3 9 9 C 1.39568 * 118.94568 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.89283 * 180.27246 * 9 8 7 11 11 O 1.21518 * 119.99905 * 359.72193 * 10 9 8 12 12 N 1.34769 * 120.00129 * 179.71933 * 10 9 8 13 13 C 1.46502 * 119.99860 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.47116 * 179.97438 * 13 12 10 15 15 N 1.46494 * 109.47350 * 180.02562 * 14 13 12 16 16 C 1.36934 * 120.00294 * 89.99770 * 15 14 13 17 17 H 1.08006 * 120.00011 * 217.58017 * 16 15 14 18 18 C 1.38808 * 119.99989 * 37.58412 * 16 15 14 19 19 N 1.31620 * 120.00262 * 21.41571 * 18 16 15 20 20 Si 1.86803 * 120.00123 * 201.42489 * 18 16 15 21 21 H 1.48497 * 109.47234 * 59.99430 * 20 18 16 22 22 H 1.48500 * 109.47253 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47029 * 299.99619 * 20 18 16 24 24 C 1.46503 * 119.99855 * 270.00288 * 15 14 13 25 25 C 1.52997 * 109.47272 * 95.30580 * 24 15 14 26 26 C 1.39967 * 118.21448 * 0.02562 * 9 8 7 27 27 C 1.37978 * 119.13658 * 359.97438 * 26 9 8 28 28 N 1.31906 * 120.97963 * 0.02562 * 27 26 9 29 29 H 1.09001 * 109.47103 * 59.99520 * 1 2 3 30 30 H 1.08996 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46693 * 299.99425 * 1 2 3 32 32 H 1.09003 * 109.46693 * 240.00575 * 2 1 3 33 33 H 1.09001 * 109.47103 * 120.00480 * 2 1 3 34 34 H 1.09000 * 109.46779 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46783 * 300.00222 * 5 3 2 36 36 H 1.08994 * 109.46784 * 60.00154 * 5 3 2 37 37 H 1.07997 * 120.52191 * 359.97438 * 8 7 6 38 38 H 0.96999 * 120.00065 * 0.02562 * 12 10 9 39 39 H 1.08994 * 109.47375 * 299.99678 * 13 12 10 40 40 H 1.08998 * 109.47078 * 60.00692 * 13 12 10 41 41 H 1.09000 * 109.46954 * 300.00436 * 14 13 12 42 42 H 1.09003 * 109.46809 * 59.99981 * 14 13 12 43 43 H 0.96996 * 120.00441 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47041 * 215.30562 * 24 15 14 45 45 H 1.09003 * 109.46987 * 335.30467 * 24 15 14 46 46 H 1.09001 * 109.47073 * 299.99962 * 25 24 15 47 47 H 1.08996 * 109.47369 * 60.00395 * 25 24 15 48 48 H 1.09002 * 109.47006 * 180.02562 * 25 24 15 49 49 H 1.08008 * 120.42857 * 179.97438 * 26 9 8 50 50 H 1.08008 * 119.50885 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 8 1.6621 2.0813 1.2212 7 6 1.4507 3.4209 1.1758 8 6 1.0807 4.0970 2.3313 9 6 0.8674 5.4749 2.2687 10 6 0.4773 6.2399 3.4761 11 8 0.3341 5.6672 4.5382 12 7 0.2814 7.5709 3.3964 13 6 -0.1048 8.3272 4.5902 14 6 -0.2612 9.8057 4.2288 15 7 -0.6468 10.5621 5.4226 16 6 0.3168 11.0986 6.2342 17 1 0.1791 11.1039 7.3054 18 6 1.4707 11.6357 5.6801 19 7 1.4794 12.0191 4.4210 20 14 3.0113 11.8141 6.7214 21 1 3.4362 10.4777 7.2098 22 1 4.0965 12.4103 5.9016 23 1 2.7256 12.6969 7.8808 24 6 -2.0635 10.7445 5.7483 25 6 -2.5007 9.6681 6.7437 26 6 1.0370 6.1154 1.0358 27 6 1.4063 5.3686 -0.0641 28 7 1.5993 4.0673 0.0325 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9283 2.4719 -0.1253 35 1 3.9995 0.9052 0.7160 36 1 3.8531 0.9570 -1.0572 37 1 0.9599 3.5649 3.2633 38 1 0.3954 8.0280 2.5485 39 1 -1.0509 7.9443 4.9726 40 1 0.6659 8.2198 5.3534 41 1 0.6851 10.1884 3.8465 42 1 -1.0317 9.9135 3.4652 43 1 2.2855 12.3947 4.0339 44 1 -2.2107 11.7298 6.1906 45 1 -2.6589 10.6618 4.8389 46 1 -2.3535 8.6828 6.3014 47 1 -1.9054 9.7508 7.6530 48 1 -3.5548 9.8035 6.9857 49 1 0.8808 7.1804 0.9466 50 1 1.5392 5.8568 -1.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713495996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:17 Heat of formation + Delta-G solvation = -29.324138 kcal Electronic energy + Delta-G solvation = -28580.853139 eV Core-core repulsion = 24608.960909 eV Total energy + Delta-G solvation = -3971.892230 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.01547 -39.48502 -38.21665 -36.36135 -34.58054 -34.22338 -32.76009 -31.92036 -30.76901 -30.02864 -29.60166 -27.67579 -25.19102 -24.37683 -23.87754 -23.40657 -22.09383 -21.31456 -20.50252 -20.16016 -18.78693 -17.41149 -16.65171 -16.52867 -15.98825 -15.71478 -15.44148 -15.22881 -14.84445 -14.68591 -14.38549 -14.20673 -14.07092 -13.83597 -13.75738 -13.51652 -13.38403 -12.92081 -12.67983 -12.41937 -12.23496 -12.18326 -12.07967 -12.02419 -11.55801 -11.44330 -11.15406 -11.06908 -10.94292 -10.77848 -10.69223 -10.56553 -10.21994 -10.09400 -10.04536 -9.93671 -9.83399 -9.60122 -8.71649 -8.66286 -8.51133 -6.66740 -5.87765 -3.46341 0.60314 0.96252 2.68956 2.96815 3.32680 3.39524 3.40548 3.44156 3.74014 4.04200 4.39189 4.42806 4.56605 4.61640 4.75658 4.80986 4.85832 4.93241 5.05748 5.21445 5.24133 5.26020 5.40429 5.47937 5.52042 5.57542 5.59396 5.67052 5.74233 5.84445 5.90933 5.95515 5.96146 6.04456 6.11224 6.17678 6.35126 6.37249 6.45831 6.64996 6.73888 6.88664 6.95037 7.05685 7.13436 7.47230 7.58905 7.75868 7.77078 8.37368 8.44585 9.10502 9.72324 10.30232 11.12553 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002243 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.305018 B =12478.870237 C =13170.609675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.085 3.915 4 H 0.090 0.910 5 C -0.170 4.170 6 O -0.297 6.297 7 C 0.321 3.679 8 C -0.137 4.137 9 C -0.045 4.045 10 C 0.549 3.451 11 O -0.533 6.533 12 N -0.707 5.707 13 C 0.095 3.905 14 C 0.137 3.863 15 N -0.579 5.579 16 C -0.262 4.262 17 H 0.062 0.938 18 C 0.014 3.986 19 N -0.888 5.888 20 Si 0.897 3.103 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.141 3.859 25 C -0.168 4.168 26 C -0.183 4.183 27 C 0.137 3.863 28 N -0.530 5.530 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.153 0.847 38 H 0.398 0.602 39 H 0.055 0.945 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.030 0.970 43 H 0.256 0.744 44 H 0.046 0.954 45 H 0.035 0.965 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.037 0.963 49 H 0.144 0.856 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -18.274 -13.492 22.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C 0.029 3.971 4 H 0.108 0.892 5 C -0.227 4.227 6 O -0.205 6.205 7 C 0.142 3.858 8 C -0.158 4.158 9 C -0.056 4.056 10 C 0.334 3.666 11 O -0.410 6.410 12 N -0.358 5.358 13 C -0.029 4.029 14 C 0.009 3.991 15 N -0.299 5.299 16 C -0.391 4.391 17 H 0.079 0.921 18 C -0.187 4.187 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.015 3.985 25 C -0.228 4.228 26 C -0.203 4.203 27 C -0.018 4.018 28 N -0.254 5.254 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.170 0.830 38 H 0.233 0.767 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.117 0.883 42 H 0.048 0.952 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.063 0.937 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.162 0.838 50 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.363 -19.186 -13.301 23.349 hybrid contribution 0.796 0.782 0.628 1.281 sum 0.433 -18.404 -12.673 22.350 Atomic orbital electron populations 1.21765 0.95172 1.01834 1.02392 1.21696 0.96838 0.94261 1.03117 1.22430 0.95246 0.93100 0.86337 0.89165 1.22222 0.95039 1.03001 1.02446 1.86312 1.82373 1.15841 1.35938 1.19619 0.92043 0.84778 0.89390 1.21133 1.02718 0.93221 0.98768 1.20306 0.97498 0.93440 0.94318 1.18102 0.78367 0.82653 0.87526 1.90777 1.51268 1.69523 1.29481 1.46060 1.68506 1.06905 1.14311 1.22590 0.99716 0.94535 0.86105 1.21066 1.02332 0.86335 0.89330 1.43595 1.00321 1.58223 1.27794 1.18981 0.97682 1.33150 0.89311 0.92077 1.25186 1.00185 0.96960 0.96338 1.69977 1.27756 1.41681 1.13555 0.86462 0.82877 0.78136 0.79907 1.20748 1.21569 1.20585 1.20888 0.85816 0.96215 0.95611 1.22391 0.98727 1.00477 1.01217 1.22224 1.03391 1.01945 0.92785 1.22354 0.93082 0.87683 0.98697 1.67123 1.19987 1.11781 1.26544 0.92775 0.92447 0.92066 0.90051 0.90891 0.91883 0.91943 0.91120 0.82972 0.76703 0.92628 0.91389 0.88324 0.95195 0.93432 0.93519 0.94703 0.93680 0.93075 0.94419 0.83810 0.81738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 37.16 0.36 -0.79 16 2 C -0.12 -0.87 5.64 -26.73 -0.15 -1.02 16 3 C 0.09 0.77 2.49 -26.73 -0.07 0.71 16 4 H 0.09 0.86 6.98 -51.93 -0.36 0.50 16 5 C -0.17 -1.38 9.53 37.16 0.35 -1.03 16 6 O -0.30 -3.50 9.30 -18.77 -0.17 -3.68 16 7 C 0.32 4.04 7.45 -17.16 -0.13 3.91 16 8 C -0.14 -1.87 9.61 -38.84 -0.37 -2.24 16 9 C -0.04 -0.61 5.91 -104.68 -0.62 -1.23 16 10 C 0.55 9.27 7.80 -12.19 -0.10 9.18 16 11 O -0.53 -10.95 16.44 5.35 0.09 -10.86 16 12 N -0.71 -11.51 5.51 -61.15 -0.34 -11.85 16 13 C 0.10 1.88 6.00 -4.04 -0.02 1.86 16 14 C 0.14 2.95 5.45 -4.04 -0.02 2.92 16 15 N -0.58 -13.74 2.43 -173.23 -0.42 -14.17 16 16 C -0.26 -6.90 9.45 -15.06 -0.14 -7.05 16 17 H 0.06 1.63 7.92 -52.48 -0.42 1.21 16 18 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 19 N -0.89 -24.25 11.47 55.49 0.64 -23.61 16 20 Si 0.90 21.16 29.60 -169.99 -5.03 16.13 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.14 2.89 6.44 -4.04 -0.03 2.86 16 25 C -0.17 -3.07 10.21 37.16 0.38 -2.69 16 26 C -0.18 -1.95 9.61 -39.03 -0.38 -2.33 16 27 C 0.14 1.34 11.17 -17.62 -0.20 1.15 16 28 N -0.53 -6.09 8.61 -13.37 -0.12 -6.21 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.55 7.82 -51.93 -0.41 0.14 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.15 2.14 7.74 -52.49 -0.41 1.73 16 38 H 0.40 5.33 6.61 -40.82 -0.27 5.07 16 39 H 0.06 1.12 6.64 -51.93 -0.34 0.77 16 40 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.10 2.38 5.52 -51.93 -0.29 2.09 16 42 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 43 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 44 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 45 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 46 H 0.04 0.83 6.64 -51.93 -0.34 0.48 16 47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.14 1.22 6.53 -52.48 -0.34 0.88 16 50 H 0.17 1.06 8.06 -52.48 -0.42 0.63 16 LS Contribution 410.18 15.07 6.18 6.18 Total: -1.00 -30.82 410.18 -8.58 -39.40 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.20 Total: 4.19 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -1.21 Total: 4.48 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.24 Total: -55.84 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -0.09 Total: -14.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -30.82 -8.58 -39.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713495996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.073 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds