Wall clock time and date at job start Tue Mar 31 2020 18:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46972 * 2 1 4 4 H 1.08996 * 109.47109 * 304.99999 * 3 2 1 5 5 C 1.53007 * 109.46695 * 185.00278 * 3 2 1 6 6 O 1.42905 * 109.46823 * 65.00679 * 3 2 1 7 7 C 1.35688 * 116.99575 * 209.99689 * 6 3 2 8 8 C 1.38896 * 119.62104 * 179.97438 * 7 6 3 9 9 C 1.39568 * 118.94568 * 179.97438 * 8 7 6 10 10 C 1.48161 * 120.89283 * 180.27246 * 9 8 7 11 11 O 1.21518 * 119.99905 * 359.72193 * 10 9 8 12 12 N 1.34769 * 120.00129 * 179.71933 * 10 9 8 13 13 C 1.46502 * 119.99860 * 179.97438 * 12 10 9 14 14 C 1.53008 * 109.47116 * 179.97438 * 13 12 10 15 15 N 1.46494 * 109.47350 * 180.02562 * 14 13 12 16 16 C 1.36934 * 120.00294 * 89.99770 * 15 14 13 17 17 H 1.08006 * 120.00011 * 217.58017 * 16 15 14 18 18 C 1.38808 * 119.99989 * 37.58412 * 16 15 14 19 19 N 1.31620 * 120.00262 * 21.41571 * 18 16 15 20 20 Si 1.86803 * 120.00123 * 201.42489 * 18 16 15 21 21 H 1.48497 * 109.47234 * 59.99430 * 20 18 16 22 22 H 1.48500 * 109.47253 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47029 * 299.99619 * 20 18 16 24 24 C 1.46503 * 119.99855 * 270.00288 * 15 14 13 25 25 C 1.52997 * 109.47272 * 95.30580 * 24 15 14 26 26 C 1.39967 * 118.21448 * 0.02562 * 9 8 7 27 27 C 1.37978 * 119.13658 * 359.97438 * 26 9 8 28 28 N 1.31906 * 120.97963 * 0.02562 * 27 26 9 29 29 H 1.09001 * 109.47103 * 59.99520 * 1 2 3 30 30 H 1.08996 * 109.47285 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46693 * 299.99425 * 1 2 3 32 32 H 1.09003 * 109.46693 * 240.00575 * 2 1 3 33 33 H 1.09001 * 109.47103 * 120.00480 * 2 1 3 34 34 H 1.09000 * 109.46779 * 180.02562 * 5 3 2 35 35 H 1.09005 * 109.46783 * 300.00222 * 5 3 2 36 36 H 1.08994 * 109.46784 * 60.00154 * 5 3 2 37 37 H 1.07997 * 120.52191 * 359.97438 * 8 7 6 38 38 H 0.96999 * 120.00065 * 0.02562 * 12 10 9 39 39 H 1.08994 * 109.47375 * 299.99678 * 13 12 10 40 40 H 1.08998 * 109.47078 * 60.00692 * 13 12 10 41 41 H 1.09000 * 109.46954 * 300.00436 * 14 13 12 42 42 H 1.09003 * 109.46809 * 59.99981 * 14 13 12 43 43 H 0.96996 * 120.00441 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.47041 * 215.30562 * 24 15 14 45 45 H 1.09003 * 109.46987 * 335.30467 * 24 15 14 46 46 H 1.09001 * 109.47073 * 299.99962 * 25 24 15 47 47 H 1.08996 * 109.47369 * 60.00395 * 25 24 15 48 48 H 1.09002 * 109.47006 * 180.02562 * 25 24 15 49 49 H 1.08008 * 120.42857 * 179.97438 * 26 9 8 50 50 H 1.08008 * 119.50885 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5649 1.4443 -0.1258 6 8 1.6621 2.0813 1.2212 7 6 1.4507 3.4209 1.1758 8 6 1.0807 4.0970 2.3313 9 6 0.8674 5.4749 2.2687 10 6 0.4773 6.2399 3.4761 11 8 0.3341 5.6672 4.5382 12 7 0.2814 7.5709 3.3964 13 6 -0.1048 8.3272 4.5902 14 6 -0.2612 9.8057 4.2288 15 7 -0.6468 10.5621 5.4226 16 6 0.3168 11.0986 6.2342 17 1 0.1791 11.1039 7.3054 18 6 1.4707 11.6357 5.6801 19 7 1.4794 12.0191 4.4210 20 14 3.0113 11.8141 6.7214 21 1 3.4362 10.4777 7.2098 22 1 4.0965 12.4103 5.9016 23 1 2.7256 12.6969 7.8808 24 6 -2.0635 10.7445 5.7483 25 6 -2.5007 9.6681 6.7437 26 6 1.0370 6.1154 1.0358 27 6 1.4063 5.3686 -0.0641 28 7 1.5993 4.0673 0.0325 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9283 2.4719 -0.1253 35 1 3.9995 0.9052 0.7160 36 1 3.8531 0.9570 -1.0572 37 1 0.9599 3.5649 3.2633 38 1 0.3954 8.0280 2.5485 39 1 -1.0509 7.9443 4.9726 40 1 0.6659 8.2198 5.3534 41 1 0.6851 10.1884 3.8465 42 1 -1.0317 9.9135 3.4652 43 1 2.2855 12.3947 4.0339 44 1 -2.2107 11.7298 6.1906 45 1 -2.6589 10.6618 4.8389 46 1 -2.3535 8.6828 6.3014 47 1 -1.9054 9.7508 7.6530 48 1 -3.5548 9.8035 6.9857 49 1 0.8808 7.1804 0.9466 50 1 1.5392 5.8568 -1.0183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713495996.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:16 Heat of formation + Delta-G solvation = -48.491310 kcal Electronic energy + Delta-G solvation = -28581.684290 eV Core-core repulsion = 24608.960909 eV Total energy + Delta-G solvation = -3972.723381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.98155 -40.71632 -39.18036 -38.10419 -35.83743 -35.19814 -33.87247 -33.76530 -31.69769 -31.15059 -30.71401 -29.36411 -26.57545 -25.69772 -24.86870 -24.27184 -23.45257 -22.41241 -22.13031 -21.34331 -19.90928 -18.63024 -18.24421 -17.59674 -17.07004 -16.88906 -16.78753 -16.56543 -16.40398 -15.72761 -15.62626 -15.38004 -15.24143 -14.97375 -14.81291 -14.72475 -14.38737 -14.14547 -14.10124 -13.81370 -13.55551 -13.25095 -13.05445 -12.99725 -12.89667 -12.69230 -12.62310 -12.41243 -12.30699 -12.04529 -12.03901 -11.78567 -11.70135 -11.62530 -11.54880 -11.34511 -11.08442 -10.69142 -10.54578 -10.12996 -9.59491 -8.59568 -7.86383 -5.48573 -0.44277 0.06757 1.44339 1.48094 1.53913 1.72671 1.75824 2.17328 2.50051 2.73553 3.20020 3.23229 3.44502 3.75212 3.78279 3.87554 3.93979 3.98221 4.00650 4.18771 4.30630 4.39185 4.43356 4.47507 4.56907 4.61307 4.67256 4.68730 4.75630 4.78729 4.82034 4.85085 4.97803 5.00153 5.04242 5.09104 5.10829 5.18405 5.20156 5.29495 5.30202 5.35809 5.37845 5.56787 5.65856 5.74070 6.21592 6.40803 6.47860 6.70212 7.04353 7.15935 7.82709 8.34674 9.09597 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017129 B = 0.002243 C = 0.002125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.305018 B =12478.870237 C =13170.609675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C 0.079 3.921 4 H 0.088 0.912 5 C -0.165 4.165 6 O -0.311 6.311 7 C 0.317 3.683 8 C -0.156 4.156 9 C -0.057 4.057 10 C 0.550 3.450 11 O -0.577 6.577 12 N -0.697 5.697 13 C 0.117 3.883 14 C 0.144 3.856 15 N -0.596 5.596 16 C -0.271 4.271 17 H 0.051 0.949 18 C -0.027 4.027 19 N -0.908 5.908 20 Si 0.949 3.051 21 H -0.287 1.287 22 H -0.288 1.288 23 H -0.276 1.276 24 C 0.136 3.864 25 C -0.156 4.156 26 C -0.172 4.172 27 C 0.147 3.853 28 N -0.529 5.529 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.414 0.586 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.255 0.745 44 H 0.037 0.963 45 H 0.054 0.946 46 H 0.040 0.960 47 H 0.033 0.967 48 H 0.068 0.932 49 H 0.170 0.830 50 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.631 -18.788 -15.797 24.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.106 0.894 5 C -0.223 4.223 6 O -0.219 6.219 7 C 0.138 3.862 8 C -0.178 4.178 9 C -0.068 4.068 10 C 0.337 3.663 11 O -0.458 6.458 12 N -0.349 5.349 13 C -0.009 4.009 14 C 0.017 3.983 15 N -0.318 5.318 16 C -0.402 4.402 17 H 0.069 0.931 18 C -0.225 4.225 19 N -0.551 5.551 20 Si 0.777 3.223 21 H -0.214 1.214 22 H -0.213 1.213 23 H -0.201 1.201 24 C 0.011 3.989 25 C -0.215 4.215 26 C -0.193 4.193 27 C -0.008 4.008 28 N -0.253 5.253 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.112 0.888 37 H 0.154 0.846 38 H 0.252 0.748 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.060 0.940 47 H 0.053 0.947 48 H 0.087 0.913 49 H 0.188 0.812 50 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.416 -19.708 -15.630 25.156 hybrid contribution 0.765 0.909 1.280 1.746 sum 0.349 -18.798 -14.350 23.652 Atomic orbital electron populations 1.21759 0.95530 1.02416 1.01412 1.21732 0.96490 0.93127 1.04198 1.22691 0.95942 0.93843 0.85197 0.89410 1.22203 0.94207 1.02276 1.03600 1.86303 1.82354 1.15598 1.37604 1.19590 0.92085 0.85219 0.89287 1.21058 1.04299 0.93526 0.98879 1.20034 0.99430 0.93252 0.94107 1.18556 0.77181 0.82545 0.88041 1.90750 1.53159 1.70348 1.31497 1.45822 1.68234 1.06775 1.14020 1.22073 0.98338 0.94056 0.86445 1.20949 1.01731 0.86588 0.89039 1.43834 1.01269 1.58675 1.27988 1.19108 0.98752 1.32912 0.89379 0.93146 1.25724 1.02124 0.97288 0.97363 1.70057 1.28070 1.42541 1.14444 0.85648 0.80244 0.77594 0.78798 1.21396 1.21330 1.20115 1.21019 0.84450 0.96487 0.96935 1.22228 1.00319 0.99345 0.99651 1.22512 1.02029 1.03204 0.91538 1.23079 0.90861 0.86974 0.99926 1.67253 1.19681 1.12653 1.25749 0.92558 0.91108 0.94202 0.87563 0.91112 0.93376 0.92142 0.88800 0.84605 0.74768 0.92909 0.94912 0.90599 0.93204 0.93600 0.94445 0.92794 0.94043 0.94738 0.91268 0.81247 0.77504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.81 71.98 0.71 -1.45 16 2 C -0.12 -1.52 5.64 30.60 0.17 -1.34 16 3 C 0.08 1.34 2.49 30.60 0.08 1.42 16 4 H 0.09 1.53 6.98 -2.39 -0.02 1.52 16 5 C -0.17 -2.45 9.53 71.98 0.69 -1.77 16 6 O -0.31 -7.34 9.30 -90.07 -0.84 -8.18 16 7 C 0.32 7.89 7.45 84.80 0.63 8.52 16 8 C -0.16 -4.37 9.61 22.75 0.22 -4.15 16 9 C -0.06 -1.56 5.91 -19.90 -0.12 -1.68 16 10 C 0.55 18.83 7.80 86.88 0.68 19.50 16 11 O -0.58 -24.69 16.44 -3.77 -0.06 -24.75 16 12 N -0.70 -22.42 5.51 -465.67 -2.57 -24.99 16 13 C 0.12 4.66 6.00 86.38 0.52 5.18 16 14 C 0.14 6.15 5.45 86.38 0.47 6.62 16 15 N -0.60 -28.32 2.43 -701.99 -1.71 -30.03 16 16 C -0.27 -14.47 9.45 84.03 0.79 -13.67 16 17 H 0.05 2.74 7.92 -2.91 -0.02 2.72 16 18 C -0.03 -1.43 4.95 84.86 0.42 -1.01 16 19 N -0.91 -49.68 11.47 21.65 0.25 -49.43 16 20 Si 0.95 43.86 29.60 68.60 2.03 45.89 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 C 0.14 5.47 6.44 86.38 0.56 6.02 16 25 C -0.16 -5.53 10.21 71.98 0.73 -4.79 16 26 C -0.17 -3.27 9.61 22.63 0.22 -3.06 16 27 C 0.15 2.41 11.17 84.62 0.94 3.36 16 28 N -0.53 -11.16 8.61 -309.13 -2.66 -13.82 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.72 7.82 -2.39 -0.02 0.70 16 32 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.14 4.15 7.74 -2.91 -0.02 4.12 16 38 H 0.41 10.46 6.61 -92.71 -0.61 9.85 16 39 H 0.05 2.14 6.64 -2.39 -0.02 2.12 16 40 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 3.66 5.52 -2.39 -0.01 3.65 16 42 H 0.05 1.91 7.86 -2.39 -0.02 1.89 16 43 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 44 H 0.04 1.55 8.08 -2.39 -0.02 1.53 16 45 H 0.05 1.94 7.83 -2.39 -0.02 1.92 16 46 H 0.04 1.48 6.64 -2.39 -0.02 1.46 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.17 2.28 6.53 -2.91 -0.02 2.26 16 50 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -68.21 410.18 2.47 -65.74 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.32 Total: 21.86 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 7.71 Total: 17.72 kcal Atomic # 7 Polarization: -111.58 SS G_CDS: -6.69 Total: -118.27 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.90 Total: -32.93 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -68.21 2.47 -65.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713495996.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.248 kcal (2) G-P(sol) polarization free energy of solvation -68.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds