Wall clock time and date at job start Tue Mar 31 2020 18:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 119.99891 * 2 1 4 4 H 1.09001 * 109.47746 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47561 * 240.00135 * 3 2 1 6 6 C 1.53006 * 109.47045 * 65.00195 * 5 3 2 7 7 C 1.53009 * 109.47044 * 120.00382 * 3 2 1 8 8 C 1.50702 * 109.47127 * 184.99955 * 7 3 2 9 9 O 1.21277 * 120.00058 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99800 * 179.97438 * 8 7 3 11 11 C 1.47862 * 126.92645 * 0.02671 * 10 8 7 12 12 C 1.56020 * 105.20321 * 181.86597 * 11 10 8 13 13 H 1.09000 * 116.26201 * 159.75209 * 12 11 10 14 14 C 1.57353 * 99.48074 * 32.80579 * 12 11 10 15 15 C 1.49279 * 126.92937 * 179.97438 * 10 8 7 16 16 H 1.09002 * 116.11814 * 16.02284 * 15 10 8 17 17 C 1.56002 * 104.12990 * 246.91170 * 15 10 8 18 18 N 1.48283 * 105.07268 * 288.79994 * 17 15 10 19 19 C 1.46897 * 111.00457 * 122.54310 * 18 17 15 20 20 C 1.50702 * 109.46893 * 76.50979 * 19 18 17 21 21 O 1.21282 * 120.00310 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99522 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99796 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00169 * 0.02562 * 23 22 20 25 25 C 1.38949 * 120.00093 * 179.97438 * 23 22 20 26 26 N 1.31409 * 120.00066 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00096 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47466 * 90.00480 * 27 25 23 29 29 H 1.48507 * 109.46979 * 209.99961 * 27 25 23 30 30 H 1.48498 * 109.47084 * 330.00239 * 27 25 23 31 31 H 1.07997 * 120.00198 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00281 * 359.97438 * 1 2 3 33 33 H 1.07998 * 119.99655 * 180.02562 * 2 1 3 34 34 H 1.08997 * 109.47403 * 185.00496 * 5 3 2 35 35 H 1.09000 * 109.47033 * 305.00718 * 5 3 2 36 36 H 1.08996 * 109.46756 * 300.00481 * 6 5 3 37 37 H 1.09000 * 109.46779 * 60.00366 * 6 5 3 38 38 H 1.08997 * 109.47350 * 180.02562 * 6 5 3 39 39 H 1.08999 * 109.46737 * 64.99790 * 7 3 2 40 40 H 1.08999 * 109.46576 * 305.00088 * 7 3 2 41 41 H 1.09007 * 110.31234 * 300.82219 * 11 10 8 42 42 H 1.08998 * 110.31404 * 62.90420 * 11 10 8 43 43 H 1.08999 * 112.34388 * 191.75479 * 14 12 11 44 44 H 1.08997 * 112.35613 * 64.35273 * 14 12 11 45 45 H 1.09008 * 110.32059 * 47.69592 * 17 15 10 46 46 H 1.08997 * 110.32463 * 169.89501 * 17 15 10 47 47 H 1.09002 * 109.46798 * 196.50621 * 19 18 17 48 48 H 1.08994 * 109.46896 * 316.50961 * 19 18 17 49 49 H 0.96999 * 120.00419 * 359.97438 * 22 20 19 50 50 H 0.97007 * 120.00332 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0563 1.4309 -2.4953 7 6 2.9432 1.3861 1.2493 8 6 3.6020 2.7400 1.3128 9 8 3.3886 3.5595 0.4447 10 7 4.4276 3.0403 2.3349 11 6 4.7935 2.1640 3.4682 12 6 5.7299 3.0285 4.3682 13 1 5.8363 2.7057 5.4038 14 6 5.0958 4.4463 4.1154 15 6 5.1579 4.3243 2.5504 16 1 4.8080 5.1785 1.9705 17 6 6.6602 3.9419 2.3763 18 7 6.9954 3.1390 3.5770 19 6 7.4952 1.8103 3.1993 20 6 8.9192 1.9270 2.7201 21 8 9.4639 3.0103 2.6951 22 7 9.5871 0.8275 2.3182 23 6 10.8824 0.9336 1.8817 24 1 11.3677 1.8982 1.8603 25 6 11.5712 -0.2000 1.4679 26 7 10.9809 -1.3737 1.4944 27 14 13.3363 -0.0555 0.8738 28 1 14.2608 -0.2174 2.0246 29 1 13.6082 -1.1136 -0.1321 30 1 13.5432 1.2792 0.2567 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5401 0.9353 0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 3.5540 2.2879 -1.2055 35 1 3.5905 0.5106 -1.2952 36 1 1.4454 0.5293 -2.5389 37 1 1.4089 2.3066 -2.4493 38 1 2.6829 1.4883 -3.3853 39 1 3.7085 0.6112 1.2055 40 1 2.3279 1.2394 2.1370 41 1 3.9020 1.8700 4.0224 42 1 5.3230 1.2817 3.1088 43 1 5.7226 5.2539 4.4934 44 1 4.0730 4.5150 4.4859 45 1 6.7973 3.3473 1.4730 46 1 7.2773 4.8395 2.3368 47 1 7.4560 1.1480 4.0642 48 1 6.8754 1.4025 2.4009 49 1 9.1514 -0.0389 2.3378 50 1 11.4618 -2.1652 1.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714989708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:57 Heat of formation + Delta-G solvation = -16.759190 kcal Electronic energy + Delta-G solvation = -29859.992889 eV Core-core repulsion = 25888.645517 eV Total energy + Delta-G solvation = -3971.347373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.30760 -39.25721 -37.90628 -36.68919 -34.19491 -33.61002 -31.96672 -31.65213 -31.11707 -29.97855 -29.83448 -26.61190 -25.47808 -24.56868 -23.95102 -22.07426 -21.24863 -20.58691 -19.83527 -19.46697 -18.49186 -17.81101 -17.31672 -16.77039 -16.10516 -15.58067 -15.38490 -15.08358 -14.75820 -14.57945 -14.56542 -14.07700 -13.87774 -13.71236 -13.41950 -13.15042 -12.89103 -12.82621 -12.67008 -12.35172 -12.11430 -12.06557 -12.04337 -11.67465 -11.53720 -11.41796 -11.33876 -11.25575 -11.19625 -11.10741 -10.88252 -10.85951 -10.71873 -10.39383 -10.21574 -9.80657 -9.55322 -9.49802 -8.84987 -8.44306 -7.96881 -7.91990 -6.41527 -3.82098 2.02714 2.54670 2.77158 3.17961 3.26552 3.32405 3.78627 3.90894 4.13173 4.20540 4.33254 4.47191 4.54673 4.66504 4.81250 4.85593 4.89394 5.02158 5.04579 5.15818 5.18176 5.21843 5.26891 5.34604 5.35804 5.42625 5.53523 5.61153 5.62807 5.65076 5.72032 5.74812 5.76574 5.77901 5.82906 5.93340 6.01404 6.05797 6.20877 6.26438 6.26673 6.30103 6.42199 6.56832 6.94289 7.10192 7.42911 7.55446 8.06397 8.07356 8.62227 9.18892 9.54709 10.06932 10.76349 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003076 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.402020 B = 9099.370823 C =10758.126287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.124 4.124 6 C -0.146 4.146 7 C -0.130 4.130 8 C 0.532 3.468 9 O -0.538 6.538 10 N -0.621 5.621 11 C 0.059 3.941 12 C 0.053 3.947 13 H 0.136 0.864 14 C -0.130 4.130 15 C 0.106 3.894 16 H 0.125 0.875 17 C 0.043 3.957 18 N -0.488 5.488 19 C 0.035 3.965 20 C 0.445 3.555 21 O -0.575 6.575 22 N -0.567 5.567 23 C -0.297 4.297 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.929 3.071 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.052 0.948 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.918 2.376 2.688 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.161 4.161 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.161 4.161 6 C -0.204 4.204 7 C -0.170 4.170 8 C 0.322 3.678 9 O -0.415 6.415 10 N -0.357 5.357 11 C -0.066 4.066 12 C -0.056 4.056 13 H 0.153 0.847 14 C -0.169 4.169 15 C 0.003 3.997 16 H 0.143 0.857 17 C -0.086 4.086 18 N -0.211 5.211 19 C -0.097 4.097 20 C 0.230 3.770 21 O -0.458 6.458 22 N -0.204 5.204 23 C -0.427 4.427 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.545 5.545 27 Si 0.756 3.244 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.127 0.873 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.070 0.930 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.210 3.566 2.343 20.655 hybrid contribution 0.048 -1.358 -0.716 1.535 sum -20.162 2.208 1.628 20.347 Atomic orbital electron populations 1.23837 0.95899 1.01714 1.01647 1.22955 0.95930 0.98103 0.99110 1.20160 0.96794 0.95626 0.93747 0.90113 1.21671 0.98057 1.03118 0.93272 1.21717 0.99725 1.01397 0.97535 1.21686 1.00128 0.94971 1.00213 1.20342 0.77912 0.89543 0.80040 1.90673 1.62444 1.50759 1.37659 1.49344 1.46030 1.16306 1.24006 1.23359 0.99786 0.94873 0.88563 1.24822 0.87925 0.94897 0.97936 0.84669 1.23942 1.01066 0.97407 0.94447 1.24175 0.91925 0.87359 0.96211 0.85674 1.23622 0.92914 0.99676 0.92400 1.64592 1.25065 1.13487 1.17984 1.22145 0.96195 0.91063 1.00297 1.19709 0.87510 0.85413 0.84395 1.90521 1.69404 1.27182 1.58670 1.41852 1.13182 1.08157 1.57183 1.19683 0.88122 0.95778 1.39085 0.87979 1.25239 1.00288 0.94680 0.97729 1.69607 1.38032 0.98599 1.48242 0.85873 0.81965 0.78094 0.78460 1.20401 1.20955 1.19438 0.88548 0.88691 0.87284 0.89783 0.92386 0.93003 0.92932 0.92964 0.88786 0.89018 0.91015 0.90155 0.88408 0.90054 0.92128 0.88878 0.89319 0.93007 0.77630 0.91924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 14.32 29.01 0.42 -1.09 16 2 C -0.14 -1.22 7.75 -36.03 -0.28 -1.50 16 3 C -0.04 -0.45 1.80 -91.77 -0.17 -0.61 16 4 H 0.08 0.90 7.60 -51.93 -0.39 0.50 16 5 C -0.12 -1.41 5.18 -26.73 -0.14 -1.55 16 6 C -0.15 -1.50 9.73 37.16 0.36 -1.13 16 7 C -0.13 -1.28 4.44 -27.88 -0.12 -1.40 16 8 C 0.53 6.83 7.57 -10.98 -0.08 6.75 16 9 O -0.54 -8.56 14.33 5.56 0.08 -8.48 16 10 N -0.62 -7.40 2.95 -156.79 -0.46 -7.86 16 11 C 0.06 0.58 5.62 -1.68 -0.01 0.57 16 12 C 0.05 0.56 5.22 -62.19 -0.32 0.23 16 13 H 0.14 1.17 8.14 -51.93 -0.42 0.74 16 14 C -0.13 -1.28 6.81 -22.14 -0.15 -1.43 16 15 C 0.11 1.30 5.23 -62.56 -0.33 0.97 16 16 H 0.13 1.53 8.05 -51.93 -0.42 1.11 16 17 C 0.04 0.66 5.44 -1.45 -0.01 0.65 16 18 N -0.49 -7.49 4.84 -218.06 -1.06 -8.54 16 19 C 0.03 0.58 4.13 -4.98 -0.02 0.56 16 20 C 0.44 10.36 7.63 -10.99 -0.08 10.28 16 21 O -0.57 -15.51 15.47 5.56 0.09 -15.43 16 22 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 23 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 24 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 27 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 31 H 0.10 0.63 8.06 -52.49 -0.42 0.21 16 32 H 0.09 0.72 7.83 -52.48 -0.41 0.31 16 33 H 0.11 0.87 8.06 -52.49 -0.42 0.44 16 34 H 0.08 1.17 5.88 -51.93 -0.31 0.87 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.48 7.38 -51.93 -0.38 0.10 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.84 5.54 -51.93 -0.29 0.55 16 43 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.09 7.42 -51.92 -0.39 0.70 16 46 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 47 H 0.09 1.31 8.03 -51.93 -0.42 0.89 16 48 H 0.05 0.83 6.11 -51.93 -0.32 0.51 16 49 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 397.59 15.07 5.99 5.99 Total: -1.00 -32.81 397.59 -9.12 -41.93 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.23 Total: 10.94 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -1.18 Total: 3.39 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.85 Total: -54.42 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.17 Total: -23.91 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.81 -9.12 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714989708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.169 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds