Wall clock time and date at job start Tue Mar 31 2020 18:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50694 * 119.99891 * 2 1 4 4 H 1.09001 * 109.47746 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47561 * 240.00135 * 3 2 1 6 6 C 1.53006 * 109.47045 * 65.00195 * 5 3 2 7 7 C 1.53009 * 109.47044 * 120.00382 * 3 2 1 8 8 C 1.50702 * 109.47127 * 184.99955 * 7 3 2 9 9 O 1.21277 * 120.00058 * 0.02562 * 8 7 3 10 10 N 1.34776 * 119.99800 * 179.97438 * 8 7 3 11 11 C 1.47862 * 126.92645 * 0.02671 * 10 8 7 12 12 C 1.56020 * 105.20321 * 181.86597 * 11 10 8 13 13 H 1.09000 * 116.26201 * 159.75209 * 12 11 10 14 14 C 1.57353 * 99.48074 * 32.80579 * 12 11 10 15 15 C 1.49279 * 126.92937 * 179.97438 * 10 8 7 16 16 H 1.09002 * 116.11814 * 16.02284 * 15 10 8 17 17 C 1.56002 * 104.12990 * 246.91170 * 15 10 8 18 18 N 1.48283 * 105.07268 * 288.79994 * 17 15 10 19 19 C 1.46897 * 111.00457 * 122.54310 * 18 17 15 20 20 C 1.50702 * 109.46893 * 76.50979 * 19 18 17 21 21 O 1.21282 * 120.00310 * 359.97438 * 20 19 18 22 22 N 1.34774 * 119.99522 * 180.02562 * 20 19 18 23 23 C 1.37099 * 119.99796 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00169 * 0.02562 * 23 22 20 25 25 C 1.38949 * 120.00093 * 179.97438 * 23 22 20 26 26 N 1.31409 * 120.00066 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00096 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47466 * 90.00480 * 27 25 23 29 29 H 1.48507 * 109.46979 * 209.99961 * 27 25 23 30 30 H 1.48498 * 109.47084 * 330.00239 * 27 25 23 31 31 H 1.07997 * 120.00198 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00281 * 359.97438 * 1 2 3 33 33 H 1.07998 * 119.99655 * 180.02562 * 2 1 3 34 34 H 1.08997 * 109.47403 * 185.00496 * 5 3 2 35 35 H 1.09000 * 109.47033 * 305.00718 * 5 3 2 36 36 H 1.08996 * 109.46756 * 300.00481 * 6 5 3 37 37 H 1.09000 * 109.46779 * 60.00366 * 6 5 3 38 38 H 1.08997 * 109.47350 * 180.02562 * 6 5 3 39 39 H 1.08999 * 109.46737 * 64.99790 * 7 3 2 40 40 H 1.08999 * 109.46576 * 305.00088 * 7 3 2 41 41 H 1.09007 * 110.31234 * 300.82219 * 11 10 8 42 42 H 1.08998 * 110.31404 * 62.90420 * 11 10 8 43 43 H 1.08999 * 112.34388 * 191.75479 * 14 12 11 44 44 H 1.08997 * 112.35613 * 64.35273 * 14 12 11 45 45 H 1.09008 * 110.32059 * 47.69592 * 17 15 10 46 46 H 1.08997 * 110.32463 * 169.89501 * 17 15 10 47 47 H 1.09002 * 109.46798 * 196.50621 * 19 18 17 48 48 H 1.08994 * 109.46896 * 316.50961 * 19 18 17 49 49 H 0.96999 * 120.00419 * 359.97438 * 22 20 19 50 50 H 0.97007 * 120.00332 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3862 -1.2492 6 6 2.0563 1.4309 -2.4953 7 6 2.9432 1.3861 1.2493 8 6 3.6020 2.7400 1.3128 9 8 3.3886 3.5595 0.4447 10 7 4.4276 3.0403 2.3349 11 6 4.7935 2.1640 3.4682 12 6 5.7299 3.0285 4.3682 13 1 5.8363 2.7057 5.4038 14 6 5.0958 4.4463 4.1154 15 6 5.1579 4.3243 2.5504 16 1 4.8080 5.1785 1.9705 17 6 6.6602 3.9419 2.3763 18 7 6.9954 3.1390 3.5770 19 6 7.4952 1.8103 3.1993 20 6 8.9192 1.9270 2.7201 21 8 9.4639 3.0103 2.6951 22 7 9.5871 0.8275 2.3182 23 6 10.8824 0.9336 1.8817 24 1 11.3677 1.8982 1.8603 25 6 11.5712 -0.2000 1.4679 26 7 10.9809 -1.3737 1.4944 27 14 13.3363 -0.0555 0.8738 28 1 14.2608 -0.2174 2.0246 29 1 13.6082 -1.1136 -0.1321 30 1 13.5432 1.2792 0.2567 31 1 -0.5400 -0.9353 -0.0004 32 1 -0.5401 0.9353 0.0004 33 1 1.8499 -0.9353 -0.0004 34 1 3.5540 2.2879 -1.2055 35 1 3.5905 0.5106 -1.2952 36 1 1.4454 0.5293 -2.5389 37 1 1.4089 2.3066 -2.4493 38 1 2.6829 1.4883 -3.3853 39 1 3.7085 0.6112 1.2055 40 1 2.3279 1.2394 2.1370 41 1 3.9020 1.8700 4.0224 42 1 5.3230 1.2817 3.1088 43 1 5.7226 5.2539 4.4934 44 1 4.0730 4.5150 4.4859 45 1 6.7973 3.3473 1.4730 46 1 7.2773 4.8395 2.3368 47 1 7.4560 1.1480 4.0642 48 1 6.8754 1.4025 2.4009 49 1 9.1514 -0.0389 2.3378 50 1 11.4618 -2.1652 1.2058 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714989708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:56 Heat of formation + Delta-G solvation = -39.066409 kcal Electronic energy + Delta-G solvation = -29860.960203 eV Core-core repulsion = 25888.645517 eV Total energy + Delta-G solvation = -3972.314686 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.32123 -40.35868 -39.64656 -37.54246 -36.01723 -34.96427 -33.31076 -32.68785 -32.54400 -30.85983 -30.81588 -28.16090 -26.38014 -26.08189 -25.13433 -22.94720 -22.19421 -21.59950 -21.10301 -20.52198 -20.01041 -19.40674 -18.26922 -18.05659 -17.30596 -16.87369 -16.56658 -16.37665 -16.07623 -15.77137 -15.61468 -15.45476 -15.16724 -15.02386 -14.48321 -14.23167 -13.96657 -13.75730 -13.66068 -13.59025 -13.49619 -13.40138 -13.09697 -12.93764 -12.85530 -12.58546 -12.43074 -12.37368 -12.18233 -12.12648 -12.10049 -12.07449 -12.04944 -11.69928 -11.58690 -11.49931 -10.78086 -10.36638 -10.21281 -10.00454 -9.77971 -9.15614 -8.46948 -5.95175 1.36650 1.39868 1.40218 1.52545 1.58227 1.88503 2.06499 2.27187 2.67280 3.19207 3.25492 3.33136 3.54062 3.60452 3.70499 3.76674 3.94484 4.04394 4.08409 4.17405 4.25613 4.32633 4.37049 4.40072 4.46814 4.51681 4.52625 4.56598 4.59823 4.71137 4.75812 4.85516 4.92405 4.93718 4.96148 4.98834 5.05087 5.08371 5.15724 5.22871 5.38022 5.39475 5.40305 5.76985 5.77871 5.85495 5.93329 6.06679 6.50489 6.61102 7.11408 7.13604 7.57102 8.13889 8.70440 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.003076 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.402020 B = 9099.370823 C =10758.126287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C -0.039 4.039 4 H 0.067 0.933 5 C -0.125 4.125 6 C -0.143 4.143 7 C -0.123 4.123 8 C 0.524 3.476 9 O -0.578 6.578 10 N -0.622 5.622 11 C 0.059 3.941 12 C 0.058 3.942 13 H 0.168 0.832 14 C -0.113 4.113 15 C 0.106 3.894 16 H 0.119 0.881 17 C 0.046 3.954 18 N -0.509 5.509 19 C 0.052 3.948 20 C 0.439 3.561 21 O -0.618 6.618 22 N -0.576 5.576 23 C -0.332 4.332 24 H 0.075 0.925 25 C -0.012 4.012 26 N -0.920 5.920 27 Si 0.989 3.011 28 H -0.269 1.269 29 H -0.270 1.270 30 H -0.276 1.276 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.025 0.975 46 H 0.069 0.931 47 H 0.120 0.880 48 H 0.064 0.936 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.815 0.671 4.414 23.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.169 4.169 3 C -0.058 4.058 4 H 0.086 0.914 5 C -0.162 4.162 6 C -0.200 4.200 7 C -0.162 4.162 8 C 0.315 3.685 9 O -0.459 6.459 10 N -0.357 5.357 11 C -0.065 4.065 12 C -0.049 4.049 13 H 0.185 0.815 14 C -0.152 4.152 15 C 0.002 3.998 16 H 0.137 0.863 17 C -0.083 4.083 18 N -0.233 5.233 19 C -0.079 4.079 20 C 0.226 3.774 21 O -0.504 6.504 22 N -0.214 5.214 23 C -0.461 4.461 24 H 0.093 0.907 25 C -0.211 4.211 26 N -0.561 5.561 27 Si 0.813 3.187 28 H -0.194 1.194 29 H -0.195 1.195 30 H -0.201 1.201 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.136 0.864 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.120 0.880 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.095 0.905 43 H 0.116 0.884 44 H 0.127 0.873 45 H 0.043 0.957 46 H 0.087 0.913 47 H 0.138 0.862 48 H 0.081 0.919 49 H 0.229 0.771 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.130 1.829 4.103 22.582 hybrid contribution 0.624 -0.761 -1.264 1.602 sum -21.506 1.068 2.839 21.719 Atomic orbital electron populations 1.23995 0.95666 1.02469 1.00009 1.22863 0.96132 0.97356 1.00565 1.20065 0.96379 0.96247 0.93130 0.91444 1.21630 0.98255 1.01456 0.94859 1.21684 0.99562 1.01808 0.96946 1.21711 1.00358 0.92974 1.01170 1.20955 0.77811 0.90293 0.79464 1.90658 1.63937 1.52186 1.39086 1.49436 1.45353 1.16435 1.24460 1.23497 1.01238 0.93933 0.87786 1.25117 0.85381 0.95703 0.98704 0.81516 1.23908 1.02562 0.97038 0.91646 1.24090 0.89509 0.87677 0.98510 0.86320 1.23431 0.95182 0.98292 0.91378 1.64488 1.28371 1.12565 1.17911 1.21955 0.91616 0.92685 1.01655 1.20911 0.89774 0.84134 0.82537 1.90488 1.71163 1.28720 1.59987 1.41919 1.12723 1.08950 1.57778 1.19607 0.89834 0.95244 1.41460 0.90679 1.25976 1.03850 0.94109 0.97188 1.69659 1.39345 0.98978 1.48078 0.84981 0.77425 0.77923 0.78342 1.19445 1.19510 1.20101 0.86975 0.88754 0.86416 0.92967 0.92342 0.91711 0.93325 0.93151 0.88029 0.86361 0.87147 0.90500 0.88423 0.87288 0.95651 0.91271 0.86162 0.91856 0.77058 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 14.32 67.78 0.97 -1.41 16 2 C -0.15 -2.24 7.75 25.65 0.20 -2.04 16 3 C -0.04 -0.75 1.80 -11.54 -0.02 -0.77 16 4 H 0.07 1.47 7.60 -2.39 -0.02 1.45 16 5 C -0.12 -2.87 5.18 30.60 0.16 -2.72 16 6 C -0.14 -2.91 9.73 71.98 0.70 -2.21 16 7 C -0.12 -2.18 4.44 29.85 0.13 -2.05 16 8 C 0.52 13.13 7.57 87.66 0.66 13.79 16 9 O -0.58 -19.00 14.33 -3.02 -0.04 -19.05 16 10 N -0.62 -13.92 2.95 -768.36 -2.26 -16.18 16 11 C 0.06 0.95 5.62 87.16 0.49 1.44 16 12 C 0.06 1.03 5.22 46.96 0.25 1.28 16 13 H 0.17 2.01 8.14 -2.39 -0.02 1.99 16 14 C -0.11 -1.92 6.81 33.57 0.23 -1.69 16 15 C 0.11 2.56 5.23 46.93 0.25 2.80 16 16 H 0.12 3.00 8.05 -2.39 -0.02 2.98 16 17 C 0.05 1.49 5.44 87.08 0.47 1.96 16 18 N -0.51 -15.20 4.84 -843.80 -4.08 -19.28 16 19 C 0.05 1.72 4.13 85.56 0.35 2.07 16 20 C 0.44 20.97 7.63 87.66 0.67 21.64 16 21 O -0.62 -34.83 15.47 -3.04 -0.05 -34.87 16 22 N -0.58 -29.63 5.29 -306.99 -1.62 -31.25 16 23 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 24 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 25 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 26 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 27 Si 0.99 43.39 29.55 68.60 2.03 45.41 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 30 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 31 H 0.11 1.11 8.06 -2.91 -0.02 1.09 16 32 H 0.09 1.23 7.83 -2.91 -0.02 1.21 16 33 H 0.12 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.05 1.55 5.88 -2.39 -0.01 1.53 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.06 1.14 7.38 -2.39 -0.02 1.12 16 37 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.08 1.35 5.54 -2.39 -0.01 1.33 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.02 0.97 7.42 -2.38 -0.02 0.95 16 46 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 47 H 0.12 3.21 8.03 -2.39 -0.02 3.19 16 48 H 0.06 1.96 6.11 -2.39 -0.01 1.95 16 49 H 0.40 19.16 7.90 -92.71 -0.73 18.42 16 50 H 0.28 13.98 8.31 -92.70 -0.77 13.21 16 Total: -1.00 -75.28 397.59 1.24 -74.04 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: 0.20 Total: 36.71 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.79 Total: 13.71 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -7.69 Total: -115.96 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -0.09 Total: -53.92 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -75.28 1.24 -74.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714989708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.976 kcal (2) G-P(sol) polarization free energy of solvation -75.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds