Wall clock time and date at job start Tue Mar 31 2020 19:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 N 1.46894 * 109.47553 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00387 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47200 * 179.97438 * 5 4 3 7 7 O 1.21294 * 119.99944 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00172 * 180.02562 * 6 5 4 9 9 C 1.37098 * 119.99980 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00367 * 359.97438 * 9 8 6 11 11 C 1.38954 * 119.99560 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99876 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99869 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46921 * 59.99744 * 13 11 9 15 15 H 1.48499 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47101 * 300.00319 * 13 11 9 17 17 N 1.46496 * 109.47385 * 120.00514 * 2 1 3 18 18 C 1.34777 * 119.99716 * 294.93125 * 17 2 1 19 19 O 1.21612 * 120.00002 * 5.19729 * 18 17 2 20 20 C 1.47101 * 119.99974 * 185.20571 * 18 17 2 21 21 C 1.32613 * 124.62233 * 179.70018 * 20 18 17 22 22 C 1.51107 * 110.75944 * 179.83945 * 21 20 18 23 23 C 1.54572 * 104.90232 * 343.80258 * 22 21 20 24 24 C 1.51114 * 124.61947 * 359.97438 * 20 18 17 25 25 C 1.52997 * 109.46934 * 240.00378 * 2 1 3 26 26 C 1.53002 * 117.52201 * 225.37954 * 25 2 1 27 27 C 1.53001 * 60.00187 * 107.48253 * 26 25 2 28 28 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47118 * 299.99228 * 1 2 3 30 30 H 1.08997 * 109.48008 * 59.99992 * 1 2 3 31 31 H 1.09005 * 109.47264 * 300.00754 * 3 2 1 32 32 H 1.08997 * 109.46820 * 60.00054 * 3 2 1 33 33 H 1.00902 * 111.00134 * 56.04539 * 4 3 2 34 34 H 1.09004 * 109.47095 * 299.99485 * 5 4 3 35 35 H 1.08993 * 109.47217 * 59.99527 * 5 4 3 36 36 H 0.97001 * 119.99650 * 359.97438 * 8 6 5 37 37 H 0.97003 * 119.99685 * 179.97438 * 12 11 9 38 38 H 0.96997 * 120.00192 * 114.92969 * 17 2 1 39 39 H 1.08005 * 124.61949 * 359.97438 * 21 20 18 40 40 H 1.09003 * 110.52087 * 224.85045 * 22 21 20 41 41 H 1.08995 * 110.15657 * 102.57586 * 22 21 20 42 42 H 1.09003 * 110.98708 * 266.71218 * 23 22 21 43 43 H 1.09005 * 110.98522 * 142.91310 * 23 22 21 44 44 H 1.08992 * 110.36963 * 315.44443 * 24 20 18 45 45 H 1.09000 * 110.36181 * 77.65616 * 24 20 18 46 46 H 1.09000 * 115.55366 * 79.67456 * 25 2 1 47 47 H 1.08993 * 117.50184 * 214.97613 * 26 25 2 48 48 H 1.09003 * 117.48983 * 359.97438 * 26 25 2 49 49 H 1.09001 * 117.49633 * 252.51691 * 27 26 25 50 50 H 1.08991 * 117.49644 * 107.49461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5417 2.7738 0.0000 7 8 6.1200 1.7076 0.0000 8 7 6.2466 3.9226 0.0010 9 6 7.6171 3.8860 0.0004 10 1 8.1319 2.9367 -0.0004 11 6 8.3436 5.0705 0.0009 12 7 7.7171 6.2256 0.0014 13 14 10.2110 5.0207 0.0009 14 1 10.6871 4.3082 -1.2119 15 1 10.7431 6.4071 0.0021 16 1 10.6871 4.3071 1.2131 17 7 2.0183 -0.6907 1.1961 18 6 1.7791 -0.1738 2.4175 19 8 1.0784 0.8134 2.5335 20 6 2.3657 -0.8036 3.6105 21 6 2.1959 -0.3698 4.8521 22 6 2.9338 -1.2512 5.8330 23 6 3.2519 -2.5427 5.0456 24 6 3.2489 -2.0296 3.5876 25 6 2.0399 -0.7212 -1.2493 26 6 3.1741 -1.7320 -1.0686 27 6 1.7548 -2.2199 -1.3658 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 3.8702 0.9166 -0.7822 34 1 3.6855 3.3378 -0.8896 35 1 3.6862 3.3368 0.8903 36 1 5.7841 4.7753 0.0013 37 1 8.2243 7.0524 0.0022 38 1 2.5138 -1.5200 1.1089 39 1 1.6083 0.4943 5.1252 40 1 2.3033 -1.4769 6.6931 41 1 3.8554 -0.7660 6.1542 42 1 2.4759 -3.2931 5.1966 43 1 4.2312 -2.9355 5.3193 44 1 2.8327 -2.7845 2.9206 45 1 4.2588 -1.7637 3.2753 46 1 2.0304 -0.1343 -2.1677 47 1 3.9109 -1.8100 -1.8680 48 1 3.5575 -1.8831 -0.0595 49 1 1.2042 -2.6921 -0.5521 50 1 1.5578 -2.6189 -2.3607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715116839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:13 Heat of formation + Delta-G solvation = -27.575345 kcal Electronic energy + Delta-G solvation = -29880.412846 eV Core-core repulsion = 25908.596450 eV Total energy + Delta-G solvation = -3971.816396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.61969 -38.79058 -38.08496 -37.31090 -35.12710 -33.91705 -33.47154 -31.39242 -31.10965 -29.25076 -28.32896 -27.52417 -25.05360 -23.78637 -22.86135 -22.52347 -22.29277 -21.04228 -19.29361 -19.03942 -18.93609 -17.83061 -17.37885 -16.47535 -15.78470 -15.55808 -15.44858 -15.00196 -14.81879 -14.76361 -14.41960 -14.17734 -13.72583 -13.57329 -13.22527 -13.08748 -12.89061 -12.71932 -12.50951 -12.28274 -12.09815 -11.79458 -11.75072 -11.63414 -11.58571 -11.46164 -11.40390 -11.33244 -11.29883 -11.20116 -10.97869 -10.42083 -10.36429 -10.23671 -10.17627 -9.54363 -9.45544 -9.03394 -8.82346 -8.35483 -7.93769 -7.86882 -6.37413 -3.78121 1.42594 3.19893 3.22199 3.27462 3.31854 3.48980 3.65523 3.97532 4.15421 4.34417 4.40302 4.41823 4.47190 4.70917 4.78544 4.81065 4.90704 5.03499 5.17911 5.23357 5.29071 5.34314 5.42246 5.48725 5.50741 5.57455 5.60266 5.61603 5.64789 5.66311 5.74105 5.79371 5.86113 5.93215 5.95964 5.98727 6.02217 6.09138 6.17434 6.21380 6.29366 6.34881 6.50289 6.66919 7.35222 7.58473 7.66794 7.84590 8.10953 8.39843 8.66601 9.22112 9.59815 10.11669 10.80454 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010226 B = 0.003158 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.574365 B = 8864.709492 C =10194.155522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.213 3.787 3 C 0.046 3.954 4 N -0.659 5.659 5 C 0.051 3.949 6 C 0.444 3.556 7 O -0.583 6.583 8 N -0.565 5.565 9 C -0.299 4.299 10 H 0.102 0.898 11 C 0.022 3.978 12 N -0.903 5.903 13 Si 0.930 3.070 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.704 5.704 18 C 0.578 3.422 19 O -0.544 6.544 20 C -0.188 4.188 21 C -0.079 4.079 22 C -0.107 4.107 23 C -0.122 4.122 24 C -0.092 4.092 25 C -0.159 4.159 26 C -0.169 4.169 27 C -0.179 4.179 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.098 0.902 33 H 0.346 0.654 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.398 0.602 39 H 0.136 0.864 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.084 0.916 46 H 0.114 0.886 47 H 0.101 0.899 48 H 0.099 0.901 49 H 0.093 0.907 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.002 -16.624 3.629 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.127 3.873 3 C -0.084 4.084 4 N -0.292 5.292 5 C -0.082 4.082 6 C 0.229 3.771 7 O -0.467 6.467 8 N -0.202 5.202 9 C -0.428 4.428 10 H 0.119 0.881 11 C -0.180 4.180 12 N -0.544 5.544 13 Si 0.757 3.243 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.199 1.199 17 N -0.357 5.357 18 C 0.367 3.633 19 O -0.423 6.423 20 C -0.191 4.191 21 C -0.099 4.099 22 C -0.144 4.144 23 C -0.160 4.160 24 C -0.129 4.129 25 C -0.178 4.178 26 C -0.206 4.206 27 C -0.216 4.216 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.049 0.951 32 H 0.116 0.884 33 H 0.165 0.835 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.236 0.764 39 H 0.154 0.846 40 H 0.095 0.905 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.119 0.881 48 H 0.117 0.883 49 H 0.111 0.889 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.944 -16.513 4.359 22.693 hybrid contribution 0.820 0.678 -1.087 1.521 sum -14.124 -15.835 3.272 21.470 Atomic orbital electron populations 1.22131 0.93836 1.02220 1.03342 1.19737 0.93317 0.91484 0.82753 1.22435 0.88856 0.95077 1.02051 1.59972 1.05176 1.12977 1.51030 1.21653 0.94912 0.90573 1.01019 1.19828 0.88109 0.84977 0.84172 1.90499 1.71221 1.29642 1.55380 1.41860 1.06966 1.06807 1.64542 1.19641 0.81146 0.94443 1.47615 0.88054 1.25252 1.00620 0.94656 0.97432 1.69610 1.36631 0.97472 1.50686 0.85929 0.82282 0.77041 0.79014 1.19962 1.20992 1.19927 1.45928 1.57614 1.27189 1.04986 1.17763 0.79634 0.83107 0.82802 1.90691 1.38832 1.26208 1.86562 1.21843 1.02681 1.00531 0.94000 1.23981 0.94646 0.97526 0.93733 1.21468 1.00261 0.94866 0.97781 1.22410 1.02128 0.97017 0.94412 1.21251 0.99600 0.94431 0.97605 1.22521 1.04281 0.91987 0.98961 1.22995 0.91552 1.02607 1.03453 1.22996 0.99458 0.96156 1.03004 0.92484 0.90388 0.91881 0.95131 0.88408 0.83492 0.94201 0.89800 0.77490 0.91870 0.76433 0.84593 0.90454 0.89604 0.91060 0.90532 0.91346 0.89717 0.86797 0.88096 0.88294 0.88869 0.88646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.37 37.15 0.31 -1.40 16 2 C 0.21 2.53 0.62 -131.83 -0.08 2.45 16 3 C 0.05 0.67 4.38 -3.83 -0.02 0.65 16 4 N -0.66 -11.34 5.94 -115.07 -0.68 -12.02 16 5 C 0.05 0.98 6.17 -4.98 -0.03 0.95 16 6 C 0.44 10.86 7.82 -10.99 -0.09 10.78 16 7 O -0.58 -16.03 15.78 5.55 0.09 -15.95 16 8 N -0.56 -14.80 5.29 -10.96 -0.06 -14.85 16 9 C -0.30 -8.51 9.68 -14.93 -0.14 -8.66 16 10 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -25.10 13.05 55.50 0.72 -24.37 16 13 Si 0.93 21.38 29.55 -169.99 -5.02 16.36 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 17 N -0.70 -8.56 4.63 -48.78 -0.23 -8.78 16 18 C 0.58 8.27 7.20 -12.66 -0.09 8.18 16 19 O -0.54 -9.21 13.00 5.27 0.07 -9.14 16 20 C -0.19 -2.32 6.09 -102.73 -0.63 -2.94 16 21 C -0.08 -0.90 10.43 -36.01 -0.38 -1.28 16 22 C -0.11 -0.92 6.80 -26.86 -0.18 -1.11 16 23 C -0.12 -0.97 7.16 -25.08 -0.18 -1.15 16 24 C -0.09 -0.89 6.06 -26.86 -0.16 -1.06 16 25 C -0.16 -1.62 3.99 -90.62 -0.36 -1.98 16 26 C -0.17 -1.68 9.36 -26.73 -0.25 -1.93 16 27 C -0.18 -1.48 9.53 -26.73 -0.25 -1.74 16 28 H 0.06 0.56 7.72 -51.93 -0.40 0.16 16 29 H 0.08 1.01 6.37 -51.93 -0.33 0.68 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.64 5.98 -51.93 -0.31 1.33 16 33 H 0.35 5.99 7.01 -39.29 -0.28 5.71 16 34 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 36 H 0.39 9.90 7.90 -40.82 -0.32 9.58 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.40 4.22 4.62 -40.82 -0.19 4.03 16 39 H 0.14 1.58 8.03 -52.48 -0.42 1.15 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.56 7.77 -51.93 -0.40 0.15 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.03 5.96 -51.93 -0.31 0.72 16 49 H 0.09 0.73 7.99 -51.93 -0.42 0.32 16 50 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -32.86 400.26 -9.67 -42.53 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: -7.96 Total: 19.93 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.63 Total: 0.26 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: -0.24 Total: -60.03 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: 0.16 Total: -25.08 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.86 -9.67 -42.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715116839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.958 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds