Wall clock time and date at job start Tue Mar 31 2020 19:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47176 * 2 1 4 4 N 1.46894 * 109.47553 * 180.02562 * 3 2 1 5 5 C 1.46897 * 111.00387 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47200 * 179.97438 * 5 4 3 7 7 O 1.21294 * 119.99944 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00172 * 180.02562 * 6 5 4 9 9 C 1.37098 * 119.99980 * 180.02562 * 8 6 5 10 10 H 1.07995 * 120.00367 * 359.97438 * 9 8 6 11 11 C 1.38954 * 119.99560 * 179.97438 * 9 8 6 12 12 N 1.31408 * 119.99876 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99869 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46921 * 59.99744 * 13 11 9 15 15 H 1.48499 * 109.47002 * 180.02562 * 13 11 9 16 16 H 1.48501 * 109.47101 * 300.00319 * 13 11 9 17 17 N 1.46496 * 109.47385 * 120.00514 * 2 1 3 18 18 C 1.34777 * 119.99716 * 294.93125 * 17 2 1 19 19 O 1.21612 * 120.00002 * 5.19729 * 18 17 2 20 20 C 1.47101 * 119.99974 * 185.20571 * 18 17 2 21 21 C 1.32613 * 124.62233 * 179.70018 * 20 18 17 22 22 C 1.51107 * 110.75944 * 179.83945 * 21 20 18 23 23 C 1.54572 * 104.90232 * 343.80258 * 22 21 20 24 24 C 1.51114 * 124.61947 * 359.97438 * 20 18 17 25 25 C 1.52997 * 109.46934 * 240.00378 * 2 1 3 26 26 C 1.53002 * 117.52201 * 225.37954 * 25 2 1 27 27 C 1.53001 * 60.00187 * 107.48253 * 26 25 2 28 28 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47118 * 299.99228 * 1 2 3 30 30 H 1.08997 * 109.48008 * 59.99992 * 1 2 3 31 31 H 1.09005 * 109.47264 * 300.00754 * 3 2 1 32 32 H 1.08997 * 109.46820 * 60.00054 * 3 2 1 33 33 H 1.00902 * 111.00134 * 56.04539 * 4 3 2 34 34 H 1.09004 * 109.47095 * 299.99485 * 5 4 3 35 35 H 1.08993 * 109.47217 * 59.99527 * 5 4 3 36 36 H 0.97001 * 119.99650 * 359.97438 * 8 6 5 37 37 H 0.97003 * 119.99685 * 179.97438 * 12 11 9 38 38 H 0.96997 * 120.00192 * 114.92969 * 17 2 1 39 39 H 1.08005 * 124.61949 * 359.97438 * 21 20 18 40 40 H 1.09003 * 110.52087 * 224.85045 * 22 21 20 41 41 H 1.08995 * 110.15657 * 102.57586 * 22 21 20 42 42 H 1.09003 * 110.98708 * 266.71218 * 23 22 21 43 43 H 1.09005 * 110.98522 * 142.91310 * 23 22 21 44 44 H 1.08992 * 110.36963 * 315.44443 * 24 20 18 45 45 H 1.09000 * 110.36181 * 77.65616 * 24 20 18 46 46 H 1.09000 * 115.55366 * 79.67456 * 25 2 1 47 47 H 1.08993 * 117.50184 * 214.97613 * 26 25 2 48 48 H 1.09003 * 117.48983 * 359.97438 * 26 25 2 49 49 H 1.09001 * 117.49633 * 252.51691 * 27 26 25 50 50 H 1.08991 * 117.49644 * 107.49461 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5089 1.4426 -0.0006 5 6 4.0353 2.8140 0.0000 6 6 5.5417 2.7738 0.0000 7 8 6.1200 1.7076 0.0000 8 7 6.2466 3.9226 0.0010 9 6 7.6171 3.8860 0.0004 10 1 8.1319 2.9367 -0.0004 11 6 8.3436 5.0705 0.0009 12 7 7.7171 6.2256 0.0014 13 14 10.2110 5.0207 0.0009 14 1 10.6871 4.3082 -1.2119 15 1 10.7431 6.4071 0.0021 16 1 10.6871 4.3071 1.2131 17 7 2.0183 -0.6907 1.1961 18 6 1.7791 -0.1738 2.4175 19 8 1.0784 0.8134 2.5335 20 6 2.3657 -0.8036 3.6105 21 6 2.1959 -0.3698 4.8521 22 6 2.9338 -1.2512 5.8330 23 6 3.2519 -2.5427 5.0456 24 6 3.2489 -2.0296 3.5876 25 6 2.0399 -0.7212 -1.2493 26 6 3.1741 -1.7320 -1.0686 27 6 1.7548 -2.2199 -1.3658 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 1.6765 1.9564 -0.8899 32 1 1.6766 1.9562 0.8900 33 1 3.8702 0.9166 -0.7822 34 1 3.6855 3.3378 -0.8896 35 1 3.6862 3.3368 0.8903 36 1 5.7841 4.7753 0.0013 37 1 8.2243 7.0524 0.0022 38 1 2.5138 -1.5200 1.1089 39 1 1.6083 0.4943 5.1252 40 1 2.3033 -1.4769 6.6931 41 1 3.8554 -0.7660 6.1542 42 1 2.4759 -3.2931 5.1966 43 1 4.2312 -2.9355 5.3193 44 1 2.8327 -2.7845 2.9206 45 1 4.2588 -1.7637 3.2753 46 1 2.0304 -0.1343 -2.1677 47 1 3.9109 -1.8100 -1.8680 48 1 3.5575 -1.8831 -0.0595 49 1 1.2042 -2.6921 -0.5521 50 1 1.5578 -2.6189 -2.3607 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715116839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:12 Heat of formation + Delta-G solvation = -49.905143 kcal Electronic energy + Delta-G solvation = -29881.381139 eV Core-core repulsion = 25908.596450 eV Total energy + Delta-G solvation = -3972.784689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.62473 -40.15254 -39.54100 -38.24793 -36.51863 -35.79156 -34.66545 -33.27921 -32.36642 -30.06774 -29.13788 -29.01129 -26.76987 -25.03878 -24.14475 -23.42392 -23.05810 -21.76176 -21.12824 -20.10040 -19.95467 -19.85415 -18.27907 -18.00764 -17.17828 -16.59337 -16.48834 -16.34236 -16.16554 -16.06083 -15.80189 -15.58352 -15.15320 -15.08423 -14.49123 -14.17603 -14.04345 -13.64641 -13.57761 -13.50646 -13.44978 -13.11652 -12.97579 -12.82790 -12.76503 -12.57283 -12.55606 -12.44120 -12.31473 -12.14683 -12.12002 -12.03669 -11.99508 -11.50858 -11.18258 -11.04474 -10.62484 -10.37720 -10.03196 -9.99862 -9.74050 -9.29699 -8.47363 -5.96698 0.46698 1.39003 1.40482 1.52066 2.02808 2.21299 2.28164 2.46743 2.88359 2.91546 3.19382 3.49281 3.53538 3.62037 3.67664 3.81160 3.99151 4.09194 4.18485 4.22032 4.27243 4.34837 4.36586 4.47386 4.50048 4.53395 4.58436 4.76227 4.77810 4.82945 4.83201 4.85659 4.87031 4.92742 4.97750 5.12387 5.16841 5.20049 5.27031 5.32070 5.36064 5.39114 5.42157 5.60281 5.67044 5.86295 6.07335 6.47309 6.58207 6.67677 7.10493 7.35405 7.53770 8.08457 8.70081 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010226 B = 0.003158 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2737.574365 B = 8864.709492 C =10194.155522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.214 3.786 3 C 0.049 3.951 4 N -0.665 5.665 5 C 0.064 3.936 6 C 0.441 3.559 7 O -0.616 6.616 8 N -0.573 5.573 9 C -0.335 4.335 10 H 0.081 0.919 11 C -0.014 4.014 12 N -0.922 5.922 13 Si 0.995 3.005 14 H -0.269 1.269 15 H -0.270 1.270 16 H -0.272 1.272 17 N -0.695 5.695 18 C 0.567 3.433 19 O -0.579 6.579 20 C -0.213 4.213 21 C -0.081 4.081 22 C -0.105 4.105 23 C -0.116 4.116 24 C -0.089 4.089 25 C -0.169 4.169 26 C -0.181 4.181 27 C -0.152 4.152 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.346 0.654 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.394 0.606 37 H 0.278 0.722 38 H 0.405 0.595 39 H 0.126 0.874 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.119 0.881 47 H 0.098 0.902 48 H 0.091 0.909 49 H 0.101 0.899 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 -18.006 3.353 23.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.128 3.872 3 C -0.081 4.081 4 N -0.298 5.298 5 C -0.068 4.068 6 C 0.229 3.771 7 O -0.502 6.502 8 N -0.210 5.210 9 C -0.464 4.464 10 H 0.099 0.901 11 C -0.213 4.213 12 N -0.563 5.563 13 Si 0.818 3.182 14 H -0.194 1.194 15 H -0.195 1.195 16 H -0.197 1.197 17 N -0.348 5.348 18 C 0.357 3.643 19 O -0.461 6.461 20 C -0.216 4.216 21 C -0.101 4.101 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.126 4.126 25 C -0.187 4.187 26 C -0.218 4.218 27 C -0.189 4.189 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.165 0.835 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.228 0.772 37 H 0.087 0.913 38 H 0.245 0.755 39 H 0.144 0.856 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.088 0.912 46 H 0.137 0.863 47 H 0.117 0.883 48 H 0.109 0.891 49 H 0.119 0.881 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.107 -17.907 4.070 23.780 hybrid contribution 0.813 1.136 -0.988 1.711 sum -14.294 -16.771 3.082 22.251 Atomic orbital electron populations 1.22055 0.92830 1.03022 1.02865 1.19757 0.93980 0.90071 0.83431 1.22431 0.86948 0.97165 1.01548 1.59933 1.06900 1.11711 1.51280 1.21490 0.90945 0.92243 1.02169 1.20698 0.90191 0.83953 0.82298 1.90467 1.72597 1.30695 1.56461 1.41932 1.06583 1.07430 1.65103 1.19657 0.82431 0.94244 1.50066 0.90120 1.26086 1.05162 0.93909 0.96187 1.69682 1.38390 0.97971 1.50270 0.84962 0.76509 0.77667 0.79036 1.19444 1.19497 1.19690 1.45915 1.57044 1.27232 1.04629 1.18197 0.79346 0.82861 0.83896 1.90667 1.40503 1.27786 1.87159 1.22048 1.03887 1.02043 0.93582 1.24261 0.94052 0.97317 0.94438 1.21530 1.00174 0.94631 0.97816 1.22436 1.03415 0.96833 0.92619 1.21260 0.98136 0.93744 0.99475 1.22474 1.05016 0.93123 0.98095 1.22987 0.92418 1.03391 1.02999 1.23054 0.97525 0.94138 1.04179 0.90997 0.92735 0.90440 0.93595 0.90750 0.83459 0.91906 0.89532 0.77199 0.91290 0.75532 0.85641 0.88380 0.89539 0.89479 0.89295 0.89751 0.91209 0.86337 0.88318 0.89119 0.88053 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.37 71.98 0.60 -2.49 16 2 C 0.21 4.93 0.62 3.60 0.00 4.93 16 3 C 0.05 1.41 4.38 86.30 0.38 1.79 16 4 N -0.67 -22.96 5.94 -517.97 -3.08 -26.04 16 5 C 0.06 2.47 6.17 85.56 0.53 3.00 16 6 C 0.44 22.02 7.82 87.65 0.69 22.70 16 7 O -0.62 -34.68 15.78 -3.07 -0.05 -34.73 16 8 N -0.57 -30.66 5.29 -306.98 -1.62 -32.28 16 9 C -0.33 -19.44 9.68 84.04 0.81 -18.62 16 10 H 0.08 4.94 7.16 -2.91 -0.02 4.92 16 11 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 12 N -0.92 -51.06 13.05 21.66 0.28 -50.78 16 13 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 15 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 16 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 17 N -0.70 -16.79 4.63 -426.50 -1.97 -18.77 16 18 C 0.57 16.61 7.20 86.57 0.62 17.23 16 19 O -0.58 -20.44 13.00 -4.07 -0.05 -20.49 16 20 C -0.21 -5.31 6.09 -18.57 -0.11 -5.42 16 21 C -0.08 -1.86 10.43 24.65 0.26 -1.60 16 22 C -0.10 -1.68 6.80 30.51 0.21 -1.47 16 23 C -0.12 -1.62 7.16 31.66 0.23 -1.39 16 24 C -0.09 -1.67 6.06 30.51 0.18 -1.48 16 25 C -0.17 -3.17 3.99 -10.79 -0.04 -3.22 16 26 C -0.18 -3.39 9.36 30.60 0.29 -3.10 16 27 C -0.15 -2.13 9.53 30.60 0.29 -1.84 16 28 H 0.07 1.26 7.72 -2.39 -0.02 1.25 16 29 H 0.05 1.42 6.37 -2.39 -0.02 1.40 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 2.56 5.98 -2.39 -0.01 2.54 16 33 H 0.35 11.95 7.01 -89.69 -0.63 11.32 16 34 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 36 H 0.39 20.31 7.90 -92.71 -0.73 19.57 16 37 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 38 H 0.41 8.40 4.62 -92.71 -0.43 7.97 16 39 H 0.13 3.06 8.03 -2.91 -0.02 3.03 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.08 1.26 7.77 -2.39 -0.02 1.24 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.09 1.85 5.96 -2.39 -0.01 1.83 16 49 H 0.10 1.29 7.99 -2.39 -0.02 1.27 16 50 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -72.10 400.26 0.12 -71.98 By element: Atomic # 1 Polarization: 57.67 SS G_CDS: -0.82 Total: 56.85 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.40 Total: 8.73 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -6.39 Total: -127.87 kcal Atomic # 8 Polarization: -55.12 SS G_CDS: -0.10 Total: -55.22 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -72.10 0.12 -71.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715116839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.075 kcal (2) G-P(sol) polarization free energy of solvation -72.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds